protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 576 |
| AcsI | RAATTY | 3 cut(s) | 9, 16, 334 |
| AcuI | CTGAAG | 1 cut(s) | 258 |
| AcvI | CACGTG | 1 cut(s) | 38 |
| AdeI | CACNNNGTG | 1 cut(s) | 38 |
| AfaI | GTAC | 2 cut(s) | 115, 190 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 73, 576 |
| AjnI | CCWGG | 1 cut(s) | 547 |
| AoxI | GGCC | 2 cut(s) | 358, 447 |
| ApeKI | GCWGC | 2 cut(s) | 152, 155 |
| ApoI | RAATTY | 3 cut(s) | 9, 16, 334 |
| AspLEI | GCGC | 1 cut(s) | 128 |
| AspS9I | GGNCC | 2 cut(s) | 447, 545 |
| AsuC2I | CCSGG | 1 cut(s) | 171 |
| AsuHPI | GGTGA | 2 cut(s) | 292, 358 |
| AvaII | GGWCC | 1 cut(s) | 545 |
| BauI | CACGAG | 1 cut(s) | 59 |
| BbrPI | CACGTG | 1 cut(s) | 38 |
| BbvI | GCAGC | 2 cut(s) | 139, 167 |
| BccI | CCATC | 1 cut(s) | 17 |
| BciT130I | CCWGG | 1 cut(s) | 549 |
| BcnI | CCSGG | 1 cut(s) | 171 |
| BfmI | CTRYAG | 1 cut(s) | 153 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BisI | GCNGC | 2 cut(s) | 153, 156 |
| BlsI | GCNGC | 2 cut(s) | 154, 157 |
| Bme1390I | CCNGG | 2 cut(s) | 171, 549 |
| Bme18I | GGWCC | 1 cut(s) | 545 |
| BmgT120I | GGNCC | 2 cut(s) | 447, 545 |
| BmrFI | CCNGG | 2 cut(s) | 171, 549 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| BpuMI | CCSGG | 1 cut(s) | 171 |
| BsaAI | YACGTR | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 1 cut(s) | 575 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 73, 576 |
| Bse1I | ACTGG | 1 cut(s) | 482 |
| BseBI | CCWGG | 1 cut(s) | 549 |
| BseDI | CCNNGG | 1 cut(s) | 575 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 73, 576 |
| BseNI | ACTGG | 1 cut(s) | 482 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BseXI | GCAGC | 2 cut(s) | 139, 167 |
| BshFI | GGCC | 2 cut(s) | 360, 449 |
| BsiSI | CCGG | 1 cut(s) | 171 |
| BslFI | GGGAC | 1 cut(s) | 112 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 73, 576 |
| BsmFI | GGGAC | 1 cut(s) | 112 |
| BsnI | GGCC | 2 cut(s) | 360, 449 |
| Bsp1407I | TGTACA | 1 cut(s) | 113 |
| Bsp19I | CCATGG | 1 cut(s) | 575 |
| BspANI | GGCC | 2 cut(s) | 360, 449 |
| BspMAI | CTGCAG | 1 cut(s) | 157 |
| BsrGI | TGTACA | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 482 |
| BssECI | CCNNGG | 1 cut(s) | 575 |
| BssSI | CACGAG | 1 cut(s) | 59 |
| BssT1I | CCWWGG | 1 cut(s) | 575 |
| Bst2BI | CACGAG | 1 cut(s) | 59 |
| Bst2UI | CCWGG | 1 cut(s) | 549 |
| Bst4CI | ACNGT | 3 cut(s) | 118, 166, 182 |
| BstAUI | TGTACA | 1 cut(s) | 113 |
| BstBAI | YACGTR | 1 cut(s) | 38 |
| BstDEI | CTNAG | 1 cut(s) | 213 |
| BstDSI | CCRYGG | 1 cut(s) | 575 |
| BstEII | GGTNACC | 1 cut(s) | 194 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 71 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 1 cut(s) | 128 |
| BstNI | CCWGG | 1 cut(s) | 549 |
| BstPI | GGTNACC | 1 cut(s) | 194 |
| BstSCI | CCNGG | 2 cut(s) | 169, 547 |
| BstSFI | CTRYAG | 1 cut(s) | 153 |
| BstV1I | GCAGC | 2 cut(s) | 139, 167 |
| BsuRI | GGCC | 2 cut(s) | 360, 449 |
| BtgI | CCRYGG | 1 cut(s) | 575 |
| BtsIMutI | CAGTG | 1 cut(s) | 187 |
| CfoI | GCGC | 1 cut(s) | 128 |
| Cfr13I | GGNCC | 2 cut(s) | 447, 545 |
| Csp6I | GTAC | 2 cut(s) | 114, 189 |
| CviAII | CATG | 4 cut(s) | 5, 391, 444, 576 |
| CviJI | RGCY | 3 cut(s) | 360, 449, 569 |
| CviKI_1 | RGCY | 3 cut(s) | 360, 449, 569 |
| CviQI | GTAC | 2 cut(s) | 114, 189 |
| DdeI | CTNAG | 1 cut(s) | 213 |
| DraIII | CACNNNGTG | 1 cut(s) | 38 |
| Eco130I | CCWWGG | 1 cut(s) | 575 |
| Eco147I | AGGCCT | 1 cut(s) | 360 |
| Eco47I | GGWCC | 1 cut(s) | 545 |
| Eco57I | CTGAAG | 1 cut(s) | 258 |
| Eco72I | CACGTG | 1 cut(s) | 38 |
| Eco91I | GGTNACC | 1 cut(s) | 194 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 71 |
| EcoO65I | GGTNACC | 1 cut(s) | 194 |
| EcoRII | CCWGG | 1 cut(s) | 547 |
| EcoT14I | CCWWGG | 1 cut(s) | 575 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 575 |
| FaeI | CATG | 4 cut(s) | 8, 394, 447, 579 |
| FaqI | GGGAC | 1 cut(s) | 112 |
| FatI | CATG | 4 cut(s) | 4, 390, 443, 575 |
| Fnu4HI | GCNGC | 2 cut(s) | 153, 156 |
| Fsp4HI | GCNGC | 2 cut(s) | 153, 156 |
| GlaI | GCGC | 1 cut(s) | 127 |
| GluI | GCNGC | 2 cut(s) | 153, 156 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HaeIII | GGCC | 2 cut(s) | 360, 449 |
| HapII | CCGG | 1 cut(s) | 171 |
| HhaI | GCGC | 1 cut(s) | 128 |
| Hin1II | CATG | 4 cut(s) | 8, 394, 447, 579 |
| Hin6I | GCGC | 1 cut(s) | 126 |
| HinP1I | GCGC | 1 cut(s) | 126 |
| HincII | GTYRAC | 1 cut(s) | 537 |
| HindII | GTYRAC | 1 cut(s) | 537 |
| HinfI | GANTC | 2 cut(s) | 55, 294 |
| HpaII | CCGG | 1 cut(s) | 171 |
| HphI | GGTGA | 2 cut(s) | 292, 358 |
| Hpy166II | GTNNAC | 2 cut(s) | 41, 537 |
| Hpy188I | TCNGA | 3 cut(s) | 22, 244, 590 |
| Hpy188III | TCNNGA | 2 cut(s) | 59, 331 |
| Hpy8I | GTNNAC | 2 cut(s) | 41, 537 |
| HpyCH4III | ACNGT | 3 cut(s) | 118, 166, 182 |
| HpyCH4IV | ACGT | 2 cut(s) | 37, 307 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 155, 314, 462, 505 |
| HpyF3I | CTNAG | 1 cut(s) | 213 |
| HpySE526I | ACGT | 2 cut(s) | 37, 307 |
| Hsp92II | CATG | 4 cut(s) | 8, 394, 447, 579 |
| HspAI | GCGC | 1 cut(s) | 126 |
| LpnPI | CCDG | 7 cut(s) | 177, 184, 212, 495, 517, 534, 561 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 167 |
| MaeII | ACGT | 2 cut(s) | 37, 307 |
| MaeIII | GTNAC | 3 cut(s) | 136, 194, 469 |
| MboII | GAAGA | 2 cut(s) | 399, 446 |
| MluCI | AATT | 5 cut(s) | 9, 16, 237, 334, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 2 cut(s) | 429, 582 |
| MslI | CAYNNNNRTG | 3 cut(s) | 392, 422, 496 |
| MspI | CCGG | 1 cut(s) | 171 |
| MspR9I | CCNGG | 2 cut(s) | 171, 549 |
| MvaI | CCWGG | 1 cut(s) | 549 |
| NciI | CCSGG | 1 cut(s) | 171 |
| NcoI | CCATGG | 1 cut(s) | 575 |
| NlaIII | CATG | 4 cut(s) | 8, 394, 447, 579 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PceI | AGGCCT | 1 cut(s) | 360 |
| PfeI | GAWTC | 2 cut(s) | 55, 294 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 576 |
| PkrI | GCNGC | 2 cut(s) | 154, 157 |
| PmaCI | CACGTG | 1 cut(s) | 38 |
| PmlI | CACGTG | 1 cut(s) | 38 |
| Ppu21I | YACGTR | 1 cut(s) | 38 |
| Psp6I | CCWGG | 1 cut(s) | 547 |
| PspCI | CACGTG | 1 cut(s) | 38 |
| PspEI | GGTNACC | 1 cut(s) | 194 |
| PspGI | CCWGG | 1 cut(s) | 547 |
| PspPI | GGNCC | 2 cut(s) | 447, 545 |
| PstI | CTGCAG | 1 cut(s) | 157 |
| RsaI | GTAC | 2 cut(s) | 115, 190 |
| RsaNI | GTAC | 2 cut(s) | 114, 189 |
| RseI | CAYNNNNRTG | 3 cut(s) | 392, 422, 496 |
| SaqAI | TTAA | 2 cut(s) | 429, 582 |
| SatI | GCNGC | 2 cut(s) | 153, 156 |
| Sau96I | GGNCC | 2 cut(s) | 447, 545 |
| ScrFI | CCNGG | 2 cut(s) | 171, 549 |
| SetI | ASST | 6 cut(s) | 40, 69, 196, 221, 305, 310 |
| SfcI | CTRYAG | 1 cut(s) | 153 |
| SinI | GGWCC | 1 cut(s) | 545 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 392, 422, 496 |
| SmlI | CTYRAG | 1 cut(s) | 329 |
| SmoI | CTYRAG | 1 cut(s) | 329 |
| Sse9I | AATT | 5 cut(s) | 9, 16, 237, 334, 506 |
| SseBI | AGGCCT | 1 cut(s) | 360 |
| SspI | AATATT | 1 cut(s) | 555 |
| StuI | AGGCCT | 1 cut(s) | 360 |
| StyD4I | CCNGG | 2 cut(s) | 169, 547 |
| StyI | CCWWGG | 1 cut(s) | 575 |
| TaaI | ACNGT | 3 cut(s) | 118, 166, 182 |
| TaiI | ACGT | 2 cut(s) | 40, 310 |
| TasI | AATT | 5 cut(s) | 9, 16, 237, 334, 506 |
| TatI | WGTACW | 2 cut(s) | 113, 188 |
| TfiI | GAWTC | 2 cut(s) | 55, 294 |
| Tru1I | TTAA | 2 cut(s) | 429, 582 |
| Tru9I | TTAA | 2 cut(s) | 429, 582 |
| TscAI | CASTG | 1 cut(s) | 187 |
| TseI | GCWGC | 2 cut(s) | 152, 155 |
| TspDTI | ATGAA | 4 cut(s) | 21, 107, 223, 447 |
| TspRI | CASTG | 1 cut(s) | 187 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 576 |
| VpaK11BI | GGWCC | 1 cut(s) | 545 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 71 |
| XapI | RAATTY | 3 cut(s) | 9, 16, 334 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |