protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Hist_deacetyl | PF00850 | 24 - 314 | 3e-86 | Histone deacetylase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 183 |
| AccI | GTMKAC | 1 cut(s) | 54 |
| AciI | CCGC | 1 cut(s) | 799 |
| AclWI | GGATC | 2 cut(s) | 603, 967 |
| AcoI | YGGCCR | 1 cut(s) | 1033 |
| AcsI | RAATTY | 3 cut(s) | 144, 311, 321 |
| AdeI | CACNNNGTG | 2 cut(s) | 112, 1279 |
| AfaI | GTAC | 1 cut(s) | 1128 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 614, 775 |
| AflIII | ACRYGT | 1 cut(s) | 1198 |
| AgsI | TTSAA | 8 cut(s) | 257, 311, 361, 715, 740, 814, 865, 935 |
| AjnI | CCWGG | 2 cut(s) | 607, 751 |
| AluBI | AGCT | 5 cut(s) | 178, 370, 475, 545, 699 |
| AluI | AGCT | 5 cut(s) | 178, 370, 475, 545, 699 |
| Alw21I | GWGCWC | 1 cut(s) | 117 |
| Alw26I | GTCTC | 1 cut(s) | 789 |
| AlwI | GGATC | 2 cut(s) | 603, 967 |
| Ama87I | CYCGRG | 1 cut(s) | 492 |
| AoxI | GGCC | 3 cut(s) | 62, 152, 1033 |
| ApaI | GGGCCC | 1 cut(s) | 66 |
| ApeKI | GCWGC | 4 cut(s) | 48, 238, 347, 807 |
| ApoI | RAATTY | 3 cut(s) | 144, 311, 321 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 860, 1098 |
| AspLEI | GCGC | 2 cut(s) | 6, 184 |
| AspS9I | GGNCC | 3 cut(s) | 62, 63, 153 |
| AsuHPI | GGTGA | 6 cut(s) | 98, 539, 629, 694, 996, 1268 |
| AvaI | CYCGRG | 1 cut(s) | 492 |
| BaeGI | GKGCMC | 1 cut(s) | 66 |
| BalI | TGGCCA | 1 cut(s) | 1035 |
| BanII | GRGCYC | 1 cut(s) | 66 |
| Bbv12I | GWGCWC | 1 cut(s) | 117 |
| BbvI | GCAGC | 4 cut(s) | 60, 250, 334, 794 |
| BccI | CCATC | 6 cut(s) | 78, 111, 133, 524, 668, 821 |
| BciT130I | CCWGG | 2 cut(s) | 609, 753 |
| BciVI | GTATCC | 1 cut(s) | 890 |
| BcoDI | GTCTC | 1 cut(s) | 789 |
| BfaI | CTAG | 2 cut(s) | 696, 1122 |
| BfuI | GTATCC | 1 cut(s) | 890 |
| BglII | AGATCT | 1 cut(s) | 958 |
| BisI | GCNGC | 4 cut(s) | 49, 239, 348, 808 |
| BlsI | GCNGC | 4 cut(s) | 50, 240, 349, 809 |
| Bme1390I | CCNGG | 2 cut(s) | 609, 753 |
| BmeT110I | CYCGRG | 1 cut(s) | 492 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 63, 153 |
| BmiI | GGNNCC | 3 cut(s) | 64, 155, 1143 |
| BmrFI | CCNGG | 2 cut(s) | 609, 753 |
| BmrI | ACTGGG | 1 cut(s) | 400 |
| BmsI | GCATC | 5 cut(s) | 334, 437, 529, 1116, 1213 |
| BmuI | ACTGGG | 1 cut(s) | 400 |
| BpmI | CTGGAG | 2 cut(s) | 813, 960 |
| BsaAI | YACGTR | 1 cut(s) | 353 |
| BsaBI | GATNNNNATC | 3 cut(s) | 519, 957, 1269 |
| BsaI | GGTCTC | 1 cut(s) | 789 |
| BsaJI | CCNNGG | 1 cut(s) | 729 |
| BsaWI | WCCGGW | 2 cut(s) | 169, 219 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 614, 775 |
| Bse118I | RCCGGY | 1 cut(s) | 87 |
| Bse1I | ACTGG | 3 cut(s) | 395, 882, 943 |
| Bse3DI | GCAATG | 1 cut(s) | 378 |
| Bse8I | GATNNNNATC | 3 cut(s) | 519, 957, 1269 |
| BseBI | CCWGG | 2 cut(s) | 609, 753 |
| BseDI | CCNNGG | 1 cut(s) | 729 |
| BseGI | GGATG | 3 cut(s) | 46, 70, 1107 |
| BseJI | GATNNNNATC | 3 cut(s) | 519, 957, 1269 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 614, 775 |
| BseMI | GCAATG | 1 cut(s) | 378 |
| BseMII | CTCAG | 1 cut(s) | 1081 |
| BseNI | ACTGG | 3 cut(s) | 395, 882, 943 |
| BseSI | GKGCMC | 1 cut(s) | 66 |
| BseXI | GCAGC | 4 cut(s) | 60, 250, 334, 794 |
| BsgI | GTGCAG | 1 cut(s) | 333 |
| BshFI | GGCC | 3 cut(s) | 64, 154, 1035 |
| BsiHKAI | GWGCWC | 1 cut(s) | 117 |
| BsiHKCI | CYCGRG | 1 cut(s) | 492 |
| BsiSI | CCGG | 3 cut(s) | 88, 170, 220 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 614, 775 |
| BsmAI | GTCTC | 1 cut(s) | 789 |
| BsnI | GGCC | 3 cut(s) | 64, 154, 1035 |
| Bso31I | GGTCTC | 1 cut(s) | 789 |
| BsoBI | CYCGRG | 1 cut(s) | 492 |
| Bsp120I | GGGCCC | 1 cut(s) | 62 |
| Bsp1286I | GDGCHC | 2 cut(s) | 66, 117 |
| Bsp1407I | TGTACA | 1 cut(s) | 1126 |
| Bsp143I | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| BspACI | CCGC | 1 cut(s) | 799 |
| BspANI | GGCC | 3 cut(s) | 64, 154, 1035 |
| BspCNI | CTCAG | 1 cut(s) | 1080 |
| BspLI | GGNNCC | 3 cut(s) | 64, 155, 1143 |
| BspPI | GGATC | 2 cut(s) | 603, 967 |
| BspTNI | GGTCTC | 1 cut(s) | 789 |
| BsrDI | GCAATG | 1 cut(s) | 378 |
| BsrFI | RCCGGY | 1 cut(s) | 87 |
| BsrGI | TGTACA | 1 cut(s) | 1126 |
| BsrI | ACTGG | 3 cut(s) | 395, 882, 943 |
| BssAI | RCCGGY | 1 cut(s) | 87 |
| BssECI | CCNNGG | 1 cut(s) | 729 |
| BssMI | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| BssT1I | CCWWGG | 1 cut(s) | 729 |
| Bst2UI | CCWGG | 2 cut(s) | 609, 753 |
| Bst4CI | ACNGT | 3 cut(s) | 574, 931, 1256 |
| BstAUI | TGTACA | 1 cut(s) | 1126 |
| BstBAI | YACGTR | 1 cut(s) | 353 |
| BstC8I | GCNNGC | 2 cut(s) | 180, 789 |
| BstDEI | CTNAG | 1 cut(s) | 1067 |
| BstF5I | GGATG | 3 cut(s) | 46, 70, 1107 |
| BstHHI | GCGC | 2 cut(s) | 6, 184 |
| BstKTI | GATC | 5 cut(s) | 127, 598, 961, 975, 1273 |
| BstMAI | GTCTC | 1 cut(s) | 789 |
| BstMBI | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 807, 1231 |
| BstNI | CCWGG | 2 cut(s) | 609, 753 |
| BstNSI | RCATGY | 1 cut(s) | 1118 |
| BstSCI | CCNGG | 2 cut(s) | 607, 751 |
| BstSLI | GKGCMC | 1 cut(s) | 66 |
| BstV1I | GCAGC | 4 cut(s) | 60, 250, 334, 794 |
| BstX2I | RGATCY | 3 cut(s) | 595, 958, 972 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 259 |
| BstYI | RGATCY | 3 cut(s) | 595, 958, 972 |
| BsuI | GTATCC | 1 cut(s) | 890 |
| BsuRI | GGCC | 3 cut(s) | 64, 154, 1035 |
| BtsCI | GGATG | 3 cut(s) | 46, 70, 1107 |
| Cac8I | GCNNGC | 2 cut(s) | 180, 789 |
| CfoI | GCGC | 2 cut(s) | 6, 184 |
| Cfr10I | RCCGGY | 1 cut(s) | 87 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 63, 153 |
| CseI | GACGC | 1 cut(s) | 40 |
| CsiI | ACCWGGT | 1 cut(s) | 751 |
| Csp6I | GTAC | 1 cut(s) | 1127 |
| CviAII | CATG | 5 cut(s) | 410, 488, 524, 833, 1115 |
| CviQI | GTAC | 1 cut(s) | 1127 |
| DdeI | CTNAG | 1 cut(s) | 1067 |
| DpnI | GATC | 5 cut(s) | 126, 597, 960, 974, 1272 |
| DpnII | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| DraIII | CACNNNGTG | 2 cut(s) | 112, 1279 |
| EaeI | YGGCCR | 1 cut(s) | 1033 |
| Eco130I | CCWWGG | 1 cut(s) | 729 |
| Eco24I | GRGCYC | 1 cut(s) | 66 |
| Eco31I | GGTCTC | 1 cut(s) | 789 |
| Eco88I | CYCGRG | 1 cut(s) | 492 |
| EcoRI | GAATTC | 1 cut(s) | 311 |
| EcoRII | CCWGG | 2 cut(s) | 607, 751 |
| EcoT14I | CCWWGG | 1 cut(s) | 729 |
| EcoT38I | GRGCYC | 1 cut(s) | 66 |
| ErhI | CCWWGG | 1 cut(s) | 729 |
| FaeI | CATG | 5 cut(s) | 413, 491, 527, 836, 1118 |
| FatI | CATG | 5 cut(s) | 409, 487, 523, 832, 1114 |
| FauNDI | CATATG | 1 cut(s) | 121 |
| FblI | GTMKAC | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 4 cut(s) | 49, 239, 348, 808 |
| FokI | GGATG | 3 cut(s) | 53, 57, 1094 |
| FriOI | GRGCYC | 1 cut(s) | 66 |
| Fsp4HI | GCNGC | 4 cut(s) | 49, 239, 348, 808 |
| FspBI | CTAG | 2 cut(s) | 696, 1122 |
| FspI | TGCGCA | 1 cut(s) | 183 |
| GlaI | GCGC | 2 cut(s) | 5, 183 |
| GluI | GCNGC | 4 cut(s) | 49, 239, 348, 808 |
| GsuI | CTGGAG | 2 cut(s) | 813, 960 |
| HaeIII | GGCC | 3 cut(s) | 64, 154, 1035 |
| HapII | CCGG | 3 cut(s) | 88, 170, 220 |
| HgaI | GACGC | 1 cut(s) | 40 |
| HhaI | GCGC | 2 cut(s) | 6, 184 |
| Hin1II | CATG | 5 cut(s) | 413, 491, 527, 836, 1118 |
| Hin6I | GCGC | 2 cut(s) | 4, 182 |
| HinP1I | GCGC | 2 cut(s) | 4, 182 |
| HindIII | AAGCTT | 1 cut(s) | 543 |
| HinfI | GANTC | 4 cut(s) | 18, 782, 953, 1024 |
| HpaII | CCGG | 3 cut(s) | 88, 170, 220 |
| HphI | GGTGA | 6 cut(s) | 98, 539, 629, 694, 996, 1268 |
| Hpy166II | GTNNAC | 3 cut(s) | 55, 401, 1127 |
| Hpy188I | TCNGA | 1 cut(s) | 958 |
| Hpy188III | TCNNGA | 5 cut(s) | 432, 715, 853, 950, 1163 |
| Hpy8I | GTNNAC | 3 cut(s) | 55, 401, 1127 |
| HpyAV | CCTTC | 1 cut(s) | 638 |
| HpyCH4III | ACNGT | 3 cut(s) | 574, 931, 1256 |
| HpyCH4IV | ACGT | 3 cut(s) | 352, 1198, 1278 |
| HpyCH4V | TGCA | 8 cut(s) | 350, 413, 520, 758, 1084, 1107, 1135, 1204 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 807, 1231 |
| HpyF3I | CTNAG | 1 cut(s) | 1067 |
| HpySE526I | ACGT | 3 cut(s) | 352, 1198, 1278 |
| Hsp92II | CATG | 5 cut(s) | 413, 491, 527, 836, 1118 |
| HspAI | GCGC | 2 cut(s) | 4, 182 |
| Kzo9I | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| LmnI | GCTCC | 3 cut(s) | 175, 472, 1123 |
| Lsp1109I | GCAGC | 4 cut(s) | 60, 250, 334, 794 |
| LweI | GCATC | 5 cut(s) | 334, 437, 529, 1116, 1213 |
| MabI | ACCWGGT | 1 cut(s) | 751 |
| MaeI | CTAG | 2 cut(s) | 696, 1122 |
| MaeII | ACGT | 3 cut(s) | 352, 1198, 1278 |
| MaeIII | GTNAC | 4 cut(s) | 374, 440, 880, 1256 |
| MalI | GATC | 5 cut(s) | 126, 597, 960, 974, 1272 |
| MboI | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| MboII | GAAGA | 8 cut(s) | 148, 293, 868, 938, 953, 1091, 1187, 1295 |
| MfeI | CAATTG | 1 cut(s) | 1130 |
| MflI | RGATCY | 3 cut(s) | 595, 958, 972 |
| MhlI | GDGCHC | 2 cut(s) | 66, 117 |
| MlsI | TGGCCA | 1 cut(s) | 1035 |
| MluCI | AATT | 8 cut(s) | 144, 185, 257, 311, 321, 1074, 1130, 1294 |
| MluNI | TGGCCA | 1 cut(s) | 1035 |
| MmeI | TCCRAC | 2 cut(s) | 905, 1135 |
| MnlI | CCTC | 4 cut(s) | 532, 881, 1014, 1132 |
| Mox20I | TGGCCA | 1 cut(s) | 1035 |
| MroXI | GAANNNNTTC | 2 cut(s) | 860, 1098 |
| MscI | TGGCCA | 1 cut(s) | 1035 |
| MseI | TTAA | 4 cut(s) | 624, 993, 1077, 1297 |
| MslI | CAYNNNNRTG | 3 cut(s) | 515, 525, 528 |
| Msp20I | TGGCCA | 1 cut(s) | 1035 |
| MspI | CCGG | 3 cut(s) | 88, 170, 220 |
| MspR9I | CCNGG | 2 cut(s) | 609, 753 |
| MunI | CAATTG | 1 cut(s) | 1130 |
| MvaI | CCWGG | 2 cut(s) | 609, 753 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 807, 1231 |
| NdeI | CATATG | 1 cut(s) | 121 |
| NdeII | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| NlaIII | CATG | 5 cut(s) | 413, 491, 527, 836, 1118 |
| NlaIV | GGNNCC | 3 cut(s) | 64, 155, 1143 |
| NmuCI | GTSAC | 3 cut(s) | 374, 880, 1256 |
| NsbI | TGCGCA | 1 cut(s) | 183 |
| NspI | RCATGY | 1 cut(s) | 1118 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1275 |
| PdmI | GAANNNNTTC | 2 cut(s) | 860, 1098 |
| PfeI | GAWTC | 4 cut(s) | 18, 782, 953, 1024 |
| PflFI | GACNNNGTC | 1 cut(s) | 455 |
| PfoI | TCCNGGA | 1 cut(s) | 607 |
| PkrI | GCNGC | 4 cut(s) | 50, 240, 349, 809 |
| Ppu21I | YACGTR | 1 cut(s) | 353 |
| Psp6I | CCWGG | 2 cut(s) | 607, 751 |
| PspGI | CCWGG | 2 cut(s) | 607, 751 |
| PspN4I | GGNNCC | 3 cut(s) | 64, 155, 1143 |
| PspOMI | GGGCCC | 1 cut(s) | 62 |
| PspPI | GGNCC | 3 cut(s) | 62, 63, 153 |
| PsuI | RGATCY | 3 cut(s) | 595, 958, 972 |
| PsyI | GACNNNGTC | 1 cut(s) | 455 |
| RsaI | GTAC | 1 cut(s) | 1128 |
| RsaNI | GTAC | 1 cut(s) | 1127 |
| RseI | CAYNNNNRTG | 3 cut(s) | 515, 525, 528 |
| SaqAI | TTAA | 4 cut(s) | 624, 993, 1077, 1297 |
| SatI | GCNGC | 4 cut(s) | 49, 239, 348, 808 |
| Sau3AI | GATC | 5 cut(s) | 124, 595, 958, 972, 1270 |
| Sau96I | GGNCC | 3 cut(s) | 62, 63, 153 |
| ScrFI | CCNGG | 2 cut(s) | 609, 753 |
| SduI | GDGCHC | 2 cut(s) | 66, 117 |
| SexAI | ACCWGGT | 1 cut(s) | 751 |
| SfaNI | GCATC | 5 cut(s) | 334, 437, 529, 1116, 1213 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 515, 525, 528 |
| Sse9I | AATT | 8 cut(s) | 144, 185, 257, 311, 321, 1074, 1130, 1294 |
| SsiI | CCGC | 1 cut(s) | 799 |
| SspI | AATATT | 1 cut(s) | 1247 |
| SspMI | CTAG | 2 cut(s) | 696, 1122 |
| StyD4I | CCNGG | 2 cut(s) | 607, 751 |
| StyI | CCWWGG | 1 cut(s) | 729 |
| TaaI | ACNGT | 3 cut(s) | 574, 931, 1256 |
| TaiI | ACGT | 3 cut(s) | 355, 1201, 1281 |
| TaqI | TCGA | 1 cut(s) | 297 |
| TasI | AATT | 8 cut(s) | 144, 185, 257, 311, 321, 1074, 1130, 1294 |
| TatI | WGTACW | 1 cut(s) | 1126 |
| TfiI | GAWTC | 4 cut(s) | 18, 782, 953, 1024 |
| Tru1I | TTAA | 4 cut(s) | 624, 993, 1077, 1297 |
| Tru9I | TTAA | 4 cut(s) | 624, 993, 1077, 1297 |
| TseFI | GTSAC | 3 cut(s) | 374, 880, 1256 |
| TseI | GCWGC | 4 cut(s) | 48, 238, 347, 807 |
| Tsp45I | GTSAC | 3 cut(s) | 374, 880, 1256 |
| TspDTI | ATGAA | 3 cut(s) | 92, 1188, 1209 |
| Tth111I | GACNNNGTC | 1 cut(s) | 455 |
| XapI | RAATTY | 3 cut(s) | 144, 311, 321 |
| XceI | RCATGY | 1 cut(s) | 1118 |
| XmiI | GTMKAC | 1 cut(s) | 54 |
| XmnI | GAANNNNTTC | 2 cut(s) | 860, 1098 |
| XspI | CTAG | 2 cut(s) | 696, 1122 |