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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 798 |
| AccI | GTMKAC | 1 cut(s) | 838 |
| AccII | CGCG | 5 cut(s) | 243, 320, 329, 362, 364 |
| AciI | CCGC | 4 cut(s) | 335, 344, 581, 834 |
| AclI | AACGTT | 1 cut(s) | 709 |
| AcoI | YGGCCR | 3 cut(s) | 351, 723, 901 |
| AcsI | RAATTY | 2 cut(s) | 748, 820 |
| AdeI | CACNNNGTG | 1 cut(s) | 155 |
| AfaI | GTAC | 1 cut(s) | 304 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 721, 899 |
| AflII | CTTAAG | 1 cut(s) | 790 |
| AgsI | TTSAA | 7 cut(s) | 65, 290, 374, 476, 497, 707, 887 |
| AjnI | CCWGG | 1 cut(s) | 558 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 255, 287 |
| AluBI | AGCT | 3 cut(s) | 437, 482, 673 |
| AluI | AGCT | 3 cut(s) | 437, 482, 673 |
| AoxI | GGCC | 4 cut(s) | 98, 351, 723, 901 |
| ApeKI | GCWGC | 2 cut(s) | 122, 146 |
| ApoI | RAATTY | 2 cut(s) | 748, 820 |
| AseI | ATTAAT | 1 cut(s) | 864 |
| AspLEI | GCGC | 4 cut(s) | 329, 364, 366, 647 |
| AspS9I | GGNCC | 1 cut(s) | 341 |
| AsuC2I | CCSGG | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 3 cut(s) | 101, 167, 305 |
| AvaII | GGWCC | 1 cut(s) | 341 |
| AxyI | CCTNAGG | 1 cut(s) | 991 |
| BalI | TGGCCA | 2 cut(s) | 725, 903 |
| BanI | GGYRCC | 1 cut(s) | 798 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| BbvI | GCAGC | 2 cut(s) | 109, 158 |
| BccI | CCATC | 3 cut(s) | 80, 385, 635 |
| BceAI | ACGGC | 1 cut(s) | 338 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 1 cut(s) | 560 |
| BciVI | GTATCC | 2 cut(s) | 81, 342 |
| BclI | TGATCA | 2 cut(s) | 228, 910 |
| BcnI | CCSGG | 1 cut(s) | 79 |
| BfaI | CTAG | 2 cut(s) | 96, 257 |
| BfoI | RGCGCY | 1 cut(s) | 648 |
| BfrI | CTTAAG | 1 cut(s) | 790 |
| BfuI | GTATCC | 2 cut(s) | 81, 342 |
| BisI | GCNGC | 2 cut(s) | 123, 147 |
| BlsI | GCNGC | 2 cut(s) | 124, 148 |
| Bme1390I | CCNGG | 2 cut(s) | 79, 560 |
| Bme18I | GGWCC | 1 cut(s) | 341 |
| BmgT120I | GGNCC | 1 cut(s) | 341 |
| BmiI | GGNNCC | 2 cut(s) | 546, 800 |
| BmrFI | CCNGG | 2 cut(s) | 79, 560 |
| BmsI | GCATC | 5 cut(s) | 82, 172, 928, 936, 988 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BpuMI | CCSGG | 1 cut(s) | 79 |
| BsaJI | CCNNGG | 1 cut(s) | 726 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 721, 899 |
| Bse118I | RCCGGY | 2 cut(s) | 252, 801 |
| Bse21I | CCTNAGG | 1 cut(s) | 991 |
| Bse3DI | GCAATG | 3 cut(s) | 132, 172, 1018 |
| BseBI | CCWGG | 1 cut(s) | 560 |
| BseDI | CCNNGG | 1 cut(s) | 726 |
| BseGI | GGATG | 1 cut(s) | 460 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 721, 899 |
| BseMI | GCAATG | 3 cut(s) | 132, 172, 1018 |
| BseMII | CTCAG | 2 cut(s) | 969, 1005 |
| BsePI | GCGCGC | 1 cut(s) | 362 |
| BseRI | GAGGAG | 1 cut(s) | 537 |
| BseXI | GCAGC | 2 cut(s) | 109, 158 |
| Bsh1236I | CGCG | 5 cut(s) | 243, 320, 329, 362, 364 |
| BshFI | GGCC | 4 cut(s) | 100, 353, 725, 903 |
| BshNI | GGYRCC | 1 cut(s) | 798 |
| BsiSI | CCGG | 3 cut(s) | 79, 253, 802 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 721, 899 |
| BsmI | GAATGC | 1 cut(s) | 785 |
| BsnI | GGCC | 4 cut(s) | 100, 353, 725, 903 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| Bsp19I | CCATGG | 1 cut(s) | 726 |
| Bsp68I | TCGCGA | 1 cut(s) | 243 |
| BspACI | CCGC | 4 cut(s) | 335, 344, 581, 834 |
| BspANI | GGCC | 4 cut(s) | 100, 353, 725, 903 |
| BspCNI | CTCAG | 2 cut(s) | 968, 1004 |
| BspFNI | CGCG | 5 cut(s) | 243, 320, 329, 362, 364 |
| BspLI | GGNNCC | 2 cut(s) | 546, 800 |
| BspQI | GCTCTTC | 1 cut(s) | 444 |
| BspT107I | GGYRCC | 1 cut(s) | 798 |
| BspTI | CTTAAG | 1 cut(s) | 790 |
| BsrDI | GCAATG | 3 cut(s) | 132, 172, 1018 |
| BsrFI | RCCGGY | 2 cut(s) | 252, 801 |
| BssAI | RCCGGY | 2 cut(s) | 252, 801 |
| BssECI | CCNNGG | 1 cut(s) | 726 |
| BssHII | GCGCGC | 1 cut(s) | 362 |
| BssMI | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| BssNAI | GTATAC | 1 cut(s) | 839 |
| BssT1I | CCWWGG | 1 cut(s) | 726 |
| Bst1107I | GTATAC | 1 cut(s) | 839 |
| Bst2UI | CCWGG | 1 cut(s) | 560 |
| Bst4CI | ACNGT | 3 cut(s) | 378, 422, 779 |
| Bst6I | CTCTTC | 2 cut(s) | 444, 858 |
| BstAFI | CTTAAG | 1 cut(s) | 790 |
| BstC8I | GCNNGC | 5 cut(s) | 254, 364, 491, 595, 803 |
| BstDEI | CTNAG | 5 cut(s) | 629, 757, 955, 983, 991 |
| BstDSI | CCRYGG | 1 cut(s) | 726 |
| BstF5I | GGATG | 1 cut(s) | 460 |
| BstFNI | CGCG | 5 cut(s) | 243, 320, 329, 362, 364 |
| BstH2I | RGCGCY | 1 cut(s) | 648 |
| BstHHI | GCGC | 4 cut(s) | 329, 364, 366, 647 |
| BstKTI | GATC | 7 cut(s) | 56, 115, 162, 231, 324, 828, 913 |
| BstMBI | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 249, 326, 343, 359, 840 |
| BstNI | CCWGG | 1 cut(s) | 560 |
| BstNSI | RCATGY | 1 cut(s) | 493 |
| BstSCI | CCNGG | 2 cut(s) | 77, 558 |
| BstUI | CGCG | 5 cut(s) | 243, 320, 329, 362, 364 |
| BstV1I | GCAGC | 2 cut(s) | 109, 158 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BstZ17I | GTATAC | 1 cut(s) | 839 |
| Bsu36I | CCTNAGG | 1 cut(s) | 991 |
| BsuI | GTATCC | 2 cut(s) | 81, 342 |
| BsuRI | GGCC | 4 cut(s) | 100, 353, 725, 903 |
| BtgI | CCRYGG | 1 cut(s) | 726 |
| BtgZI | GCGATG | 1 cut(s) | 233 |
| BtsCI | GGATG | 1 cut(s) | 460 |
| BtuMI | TCGCGA | 1 cut(s) | 243 |
| Cac8I | GCNNGC | 5 cut(s) | 254, 364, 491, 595, 803 |
| CfoI | GCGC | 4 cut(s) | 329, 364, 366, 647 |
| Cfr10I | RCCGGY | 2 cut(s) | 252, 801 |
| Cfr13I | GGNCC | 1 cut(s) | 341 |
| CpoI | CGGWCCG | 1 cut(s) | 341 |
| Csp6I | GTAC | 1 cut(s) | 303 |
| CspI | CGGWCCG | 1 cut(s) | 341 |
| CviAII | CATG | 7 cut(s) | 119, 152, 349, 490, 620, 727, 782 |
| CviQI | GTAC | 1 cut(s) | 303 |
| DdeI | CTNAG | 5 cut(s) | 629, 757, 955, 983, 991 |
| DpnI | GATC | 7 cut(s) | 55, 114, 161, 230, 323, 827, 912 |
| DpnII | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| DraIII | CACNNNGTG | 1 cut(s) | 155 |
| EaeI | YGGCCR | 3 cut(s) | 351, 723, 901 |
| Eam1104I | CTCTTC | 2 cut(s) | 444, 858 |
| EarI | CTCTTC | 2 cut(s) | 444, 858 |
| Eco130I | CCWWGG | 1 cut(s) | 726 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 1 cut(s) | 341 |
| Eco81I | CCTNAGG | 1 cut(s) | 991 |
| EcoRII | CCWGG | 1 cut(s) | 558 |
| EcoT14I | CCWWGG | 1 cut(s) | 726 |
| EcoT22I | ATGCAT | 2 cut(s) | 491, 787 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| ErhI | CCWWGG | 1 cut(s) | 726 |
| FaeI | CATG | 7 cut(s) | 122, 155, 352, 493, 623, 730, 785 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 389, 421 |
| FatI | CATG | 7 cut(s) | 118, 151, 348, 489, 619, 726, 781 |
| FbaI | TGATCA | 2 cut(s) | 228, 910 |
| FblI | GTMKAC | 1 cut(s) | 838 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 147 |
| FokI | GGATG | 1 cut(s) | 447 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 147 |
| FspBI | CTAG | 2 cut(s) | 96, 257 |
| GlaI | GCGC | 4 cut(s) | 328, 363, 365, 646 |
| GluI | GCNGC | 2 cut(s) | 123, 147 |
| HaeII | RGCGCY | 1 cut(s) | 648 |
| HaeIII | GGCC | 4 cut(s) | 100, 353, 725, 903 |
| HapII | CCGG | 3 cut(s) | 79, 253, 802 |
| HhaI | GCGC | 4 cut(s) | 329, 364, 366, 647 |
| Hin1II | CATG | 7 cut(s) | 122, 155, 352, 493, 623, 730, 785 |
| Hin6I | GCGC | 4 cut(s) | 327, 362, 364, 645 |
| HinP1I | GCGC | 4 cut(s) | 327, 362, 364, 645 |
| HincII | GTYRAC | 1 cut(s) | 358 |
| HindII | GTYRAC | 1 cut(s) | 358 |
| HinfI | GANTC | 3 cut(s) | 703, 940, 970 |
| HpaII | CCGG | 3 cut(s) | 79, 253, 802 |
| HphI | GGTGA | 3 cut(s) | 101, 167, 305 |
| Hpy166II | GTNNAC | 3 cut(s) | 274, 358, 839 |
| Hpy188I | TCNGA | 3 cut(s) | 432, 945, 958 |
| Hpy188III | TCNNGA | 3 cut(s) | 242, 282, 464 |
| Hpy8I | GTNNAC | 3 cut(s) | 274, 358, 839 |
| Hpy99I | CGWCG | 1 cut(s) | 176 |
| HpyAV | CCTTC | 4 cut(s) | 128, 284, 578, 867 |
| HpyCH4III | ACNGT | 3 cut(s) | 378, 422, 779 |
| HpyCH4IV | ACGT | 2 cut(s) | 201, 709 |
| HpyCH4V | TGCA | 7 cut(s) | 125, 146, 185, 489, 785, 1011, 1016 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 249, 326, 343, 359, 840 |
| HpyF3I | CTNAG | 5 cut(s) | 629, 757, 955, 983, 991 |
| HpySE526I | ACGT | 2 cut(s) | 201, 709 |
| Hsp92II | CATG | 7 cut(s) | 122, 155, 352, 493, 623, 730, 785 |
| HspAI | GCGC | 4 cut(s) | 327, 362, 364, 645 |
| KroI | GCCGGC | 2 cut(s) | 252, 801 |
| KroNI | GCCGGC | 2 cut(s) | 254, 803 |
| Ksp22I | TGATCA | 2 cut(s) | 228, 910 |
| Kzo9I | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| LguI | GCTCTTC | 1 cut(s) | 444 |
| LmnI | GCTCC | 1 cut(s) | 550 |
| Lsp1109I | GCAGC | 2 cut(s) | 109, 158 |
| LweI | GCATC | 5 cut(s) | 82, 172, 928, 936, 988 |
| MaeI | CTAG | 2 cut(s) | 96, 257 |
| MaeII | ACGT | 2 cut(s) | 201, 709 |
| MaeIII | GTNAC | 6 cut(s) | 510, 610, 634, 710, 760, 773 |
| MalI | GATC | 7 cut(s) | 55, 114, 161, 230, 323, 827, 912 |
| MboI | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| MboII | GAAGA | 5 cut(s) | 143, 413, 431, 434, 845 |
| MfeI | CAATTG | 1 cut(s) | 719 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlsI | TGGCCA | 2 cut(s) | 725, 903 |
| MluCI | AATT | 5 cut(s) | 285, 476, 719, 748, 820 |
| MluNI | TGGCCA | 2 cut(s) | 725, 903 |
| MmeI | TCCRAC | 1 cut(s) | 98 |
| MnlI | CCTC | 6 cut(s) | 254, 529, 558, 861, 960, 1000 |
| Mox20I | TGGCCA | 2 cut(s) | 725, 903 |
| Mph1103I | ATGCAT | 2 cut(s) | 491, 787 |
| MroNI | GCCGGC | 2 cut(s) | 252, 801 |
| MscI | TGGCCA | 2 cut(s) | 725, 903 |
| MseI | TTAA | 4 cut(s) | 449, 791, 864, 1030 |
| Msp20I | TGGCCA | 2 cut(s) | 725, 903 |
| MspCI | CTTAAG | 1 cut(s) | 790 |
| MspI | CCGG | 3 cut(s) | 79, 253, 802 |
| MspR9I | CCNGG | 2 cut(s) | 79, 560 |
| MunI | CAATTG | 1 cut(s) | 719 |
| Mva1269I | GAATGC | 1 cut(s) | 785 |
| MvaI | CCWGG | 1 cut(s) | 560 |
| MvnI | CGCG | 5 cut(s) | 243, 320, 329, 362, 364 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 249, 326, 343, 359, 840 |
| NaeI | GCCGGC | 2 cut(s) | 254, 803 |
| NciI | CCSGG | 1 cut(s) | 79 |
| NcoI | CCATGG | 1 cut(s) | 726 |
| NdeII | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| NgoMIV | GCCGGC | 2 cut(s) | 252, 801 |
| NlaIII | CATG | 7 cut(s) | 122, 155, 352, 493, 623, 730, 785 |
| NlaIV | GGNNCC | 2 cut(s) | 546, 800 |
| NmuCI | GTSAC | 1 cut(s) | 610 |
| NruI | TCGCGA | 1 cut(s) | 243 |
| NsiI | ATGCAT | 2 cut(s) | 491, 787 |
| NspI | RCATGY | 1 cut(s) | 493 |
| PaeI | GCATGC | 1 cut(s) | 493 |
| PauI | GCGCGC | 1 cut(s) | 362 |
| PciSI | GCTCTTC | 1 cut(s) | 444 |
| PctI | GAATGC | 1 cut(s) | 785 |
| PdiI | GCCGGC | 2 cut(s) | 254, 803 |
| PfeI | GAWTC | 3 cut(s) | 703, 940, 970 |
| PkrI | GCNGC | 2 cut(s) | 124, 148 |
| PshBI | ATTAAT | 1 cut(s) | 864 |
| Psp1406I | AACGTT | 1 cut(s) | 709 |
| Psp6I | CCWGG | 1 cut(s) | 558 |
| PspGI | CCWGG | 1 cut(s) | 558 |
| PspN4I | GGNNCC | 2 cut(s) | 546, 800 |
| PspPI | GGNCC | 1 cut(s) | 341 |
| PteI | GCGCGC | 1 cut(s) | 362 |
| RruI | TCGCGA | 1 cut(s) | 243 |
| RsaI | GTAC | 1 cut(s) | 304 |
| RsaNI | GTAC | 1 cut(s) | 303 |
| Rsr2I | CGGWCCG | 1 cut(s) | 341 |
| RsrII | CGGWCCG | 1 cut(s) | 341 |
| SapI | GCTCTTC | 1 cut(s) | 444 |
| SaqAI | TTAA | 4 cut(s) | 449, 791, 864, 1030 |
| SatI | GCNGC | 2 cut(s) | 123, 147 |
| Sau3AI | GATC | 7 cut(s) | 53, 112, 159, 228, 321, 825, 910 |
| Sau96I | GGNCC | 1 cut(s) | 341 |
| ScrFI | CCNGG | 2 cut(s) | 79, 560 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SetI | ASST | 8 cut(s) | 204, 439, 484, 675, 712, 853, 895, 997 |
| SfaNI | GCATC | 5 cut(s) | 82, 172, 928, 936, 988 |
| SinI | GGWCC | 1 cut(s) | 341 |
| SmlI | CTYRAG | 1 cut(s) | 790 |
| SmoI | CTYRAG | 1 cut(s) | 790 |
| SphI | GCATGC | 1 cut(s) | 493 |
| Sse9I | AATT | 5 cut(s) | 285, 476, 719, 748, 820 |
| SsiI | CCGC | 4 cut(s) | 335, 344, 581, 834 |
| SspMI | CTAG | 2 cut(s) | 96, 257 |
| StyD4I | CCNGG | 2 cut(s) | 77, 558 |
| StyI | CCWWGG | 1 cut(s) | 726 |
| TaaI | ACNGT | 3 cut(s) | 378, 422, 779 |
| TaiI | ACGT | 2 cut(s) | 204, 712 |
| TasI | AATT | 5 cut(s) | 285, 476, 719, 748, 820 |
| TfiI | GAWTC | 3 cut(s) | 703, 940, 970 |
| Tru1I | TTAA | 4 cut(s) | 449, 791, 864, 1030 |
| Tru9I | TTAA | 4 cut(s) | 449, 791, 864, 1030 |
| TseFI | GTSAC | 1 cut(s) | 610 |
| TseI | GCWGC | 2 cut(s) | 122, 146 |
| Tsp45I | GTSAC | 1 cut(s) | 610 |
| TspDTI | ATGAA | 2 cut(s) | 181, 636 |
| TspGWI | ACGGA | 2 cut(s) | 354, 598 |
| Vha464I | CTTAAG | 1 cut(s) | 790 |
| VpaK11BI | GGWCC | 1 cut(s) | 341 |
| VspI | ATTAAT | 1 cut(s) | 864 |
| XapI | RAATTY | 2 cut(s) | 748, 820 |
| XceI | RCATGY | 1 cut(s) | 493 |
| XmiI | GTMKAC | 1 cut(s) | 838 |
| XspI | CTAG | 2 cut(s) | 96, 257 |
| Zsp2I | ATGCAT | 2 cut(s) | 491, 787 |