Prupe.3G236300_v2.0.a1

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000027
Physical Location & Seq
Forward (+)
23123905 .. 23127330
3426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G236300.2

Sequence Viewer

Length: 1941 bp
ATGGCAGCTTTAGTTTCCCCGATTATTTCTACTCTGCAACTTCTTAACCAGCCAAAGCCGTCTCCTGAAGAAGGGCATAATAATAATAATAATGATGAGAGCGTTGTGAATGTGAAGCATGGTTCTTTGTACGAAAGTTTGAAGTCTGGTGATTGGAATGCTGCAAAGGAGTATATTGATCGACACCCCGAGTCACTAACACATAGAGGTTCATCAAACGGTGGGACAGCTCTTCACGAGGCAATCCAGTGGAAGCAGTTACACATTGTGGAAGAGTTGTTGAAGCTGATGACAGTAGAGGACTTGGAAATTGAAGATGGCTATGGTTTCACAGCTTTTTTCTGTGCTTTGATAAGAGGAATGGCCCCAATAATTGCCAGCATGGTTAAAAAGAACGAGAATTTAGTTACCATGCGTTTAACGACCGACTTAGGCAGTATGACTCCAGTTTTATACGCTTGTGTTTTGGGCAGCTGGAAAGTAGCTCGCTTTCTCTATTCTCGCACTCCAATCCATGTTTTGACTCAAGACAATAATGGCCGCGAAGGCGCTGAACTTATTTCCCAGTGCTTTTTCCACAGAAATAAATTTGATATTGGATGGGATTTACTTCAGCATTGCCCAAAATTGGCCCTTACTGAAAATTACTTCGGGCACTCCCCTCTAAATACACTGGTTGATTTGCGTTCCGCATTTCCAAGTACAGTTCCTCTCAGATTTTGGCAACGCTGGATCTATAACAATATACAAGTACAACAACCTCAACCTGCTCCTATCAACTCTAATGTTCGTGTAAATTTTGAAGAACTAGAAGATGACAAAAGAAATCGAAGGGATCTCATTCCCTCAGTTACGGGTTTCTTCCAAGGAGTTGTTAAGAATCTTCTCAAACTGTTAGGAATCCATGACTTGCATGAAATGAGATTGGGCCATGACCGAAATCTTCAAATTCTACGTCTCGTGTGTGACGTGGTAAAAAGTACAAATCTTGACTGGAAGAAAACTGCCTTCGTGAAAAAGGCAATCCTCCGAGCAGTAGAAGGAGGACAAGTGGAGTTTATCAAGGAGATGTGTAAGGCGAAACCAAGATTACTACTAACGCCGATGGATGAAACAGGCAGATCAATATTTCATTATGCCGTTGAATGTCGGCAAGAAAAAGTTTATAATCTTATATATGGGATCAGCGAATATGATAGGAATGCTATCTTAGTGTGTGCAGATAGGTCTAACAATACTATCCTACATGCAGCAGGGAGTTTATCTGCACATCTTAATCATATTCAAGGTGCAGCTTTGCAAATGCAAAGAGAGCTACAATGGTTCAAGGAGGTAGAGAGTATTGTACCCTCGCCGGCCTTAGAAGTTATAAATGTTAATGAGAAAATGACAGCACGAGAAGTATTCACCAAGAACCACAAAGAATTGGTGAAGGAAGGAGAAGAGTCGATGAAAGGGACAGCAACTTCTTGCACATTTGTAGGTGCCCTCATTCTTACCATTATGTTTGCTGCTGCATTTATAGTTCCTGGTGGAAGCAATCAAGATACAGGTTTTCCCATCTTCTTAAGAAAGAAGTTATTTAGGGTTTTTATAATTTCAGATTCTATATCACTCTTTTCTTCGACGACATCAGTGATGATATTCTTGGGAATTCTCACATCACGTTATGCAGAAAATGATTTCCTCTGGTCTTTGCCCACGAAAATGATATTAGGCCTTTTCACCCTTTTTTTATCTATCGCCACTATGATGGTTGCTTTTTTTTCAACTATTCTTATTATGCTTGAGGGAGAATCATGGGTATTTATTCCAATCATTTTGCTTGCTAGCGTTCCAACAAGCTCGTTTGTGTGGATGCAATTCCCCCTGTTTCTTGACATTTTTATGTTTACCTATGGAAGAGCAATATTTGACAAGAAATGCGGAGCTTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4219 PGG

Protein Analysis

647

Amino Acids

73.16

Weight (kDa)

6.82

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1167, 1370, 1595
Acc36I ACCTGC 1 cut(s) 775
AccB1I GGYRCC 1 cut(s) 1484
AccII CGCG 1 cut(s) 543
AciI CCGC 3 cut(s) 541, 690, 1926
AclWI GGATC 3 cut(s) 740, 843, 1190
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 5 cut(s) 400, 587, 796, 948, 1653
AcuI CTGAAG 2 cut(s) 87, 596
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 5 cut(s) 131, 703, 753, 982, 1347
AfiI CCNNNNNNNGG 2 cut(s) 71, 628
AflII CTTAAG 1 cut(s) 1567
AgsI TTSAA 9 cut(s) 142, 283, 314, 803, 947, 1145, 1286, 1327, 1770
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 1 cut(s) 1528
Alw26I GTCTC 2 cut(s) 66, 962
AlwI GGATC 3 cut(s) 740, 843, 1190
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 6 cut(s) 363, 538, 630, 928, 1356, 1717
ApeKI GCWGC 7 cut(s) 5, 161, 471, 1250, 1292, 1511, 1514
ApoI RAATTY 5 cut(s) 400, 587, 796, 948, 1653
ArsI GACNNNNNNTTYG 2 cut(s) 940, 972
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 3 cut(s) 364, 631, 928
AsuHPI GGTGA 4 cut(s) 161, 1399, 1441, 1717
AsuNHI GCTAGC 1 cut(s) 1829
AvaI CYCGRG 1 cut(s) 188
BaeGI GKGCMC 2 cut(s) 657, 1489
BanI GGYRCC 1 cut(s) 1484
BauI CACGAG 3 cut(s) 236, 959, 1395
BbvI GCAGC 7 cut(s) 17, 148, 483, 1262, 1304, 1498, 1501
BccI CCATC 5 cut(s) 311, 594, 1099, 1568, 1747
BceAI ACGGC 2 cut(s) 43, 1124
BciT130I CCWGG 1 cut(s) 1530
BcoDI GTCTC 2 cut(s) 66, 962
BfaI CTAG 2 cut(s) 809, 1830
BfoI RGCGCY 1 cut(s) 552
BfrI CTTAAG 1 cut(s) 1567
BfuAI ACCTGC 1 cut(s) 775
BglI GCCNNNNNGGC 1 cut(s) 546
BisI GCNGC 8 cut(s) 6, 162, 472, 541, 1251, 1293, 1512, 1515
BlsI GCNGC 8 cut(s) 7, 163, 473, 542, 1252, 1294, 1513, 1516
Bme1390I CCNGG 1 cut(s) 1530
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 3 cut(s) 364, 631, 928
BmiI GGNNCC 2 cut(s) 366, 1486
BmrFI CCNGG 1 cut(s) 1530
BmrI ACTGGG 1 cut(s) 559
BmsI GCATC 1 cut(s) 1848
BmtI GCTAGC 1 cut(s) 1833
BmuI ACTGGG 1 cut(s) 559
BpmI CTGGAG 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 510, 1808
BsaJI CCNNGG 1 cut(s) 865
BsaXI ACNNNNNCTCC 2 cut(s) 1035, 1065
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 628
Bse118I RCCGGY 1 cut(s) 1354
Bse1I ACTGG 5 cut(s) 247, 446, 565, 678, 998
Bse3DI GCAATG 1 cut(s) 616
BseBI CCWGG 1 cut(s) 1530
BseDI CCNNGG 1 cut(s) 865
BseGI GGATG 3 cut(s) 605, 1114, 1863
BseLI CCNNNNNNNGG 2 cut(s) 71, 628
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 727, 861
BseNI ACTGG 5 cut(s) 247, 446, 565, 678, 998
BseSI GKGCMC 2 cut(s) 657, 1489
BseXI GCAGC 7 cut(s) 17, 148, 483, 1262, 1304, 1498, 1501
BsgI GTGCAG 3 cut(s) 1239, 1251, 1311
Bsh1236I CGCG 1 cut(s) 543
Bsh1285I CGRYCG 1 cut(s) 426
BshFI GGCC 6 cut(s) 365, 540, 632, 930, 1358, 1719
BshNI GGYRCC 1 cut(s) 1484
BsiEI CGRYCG 1 cut(s) 426
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 1355
BslFI GGGAC 2 cut(s) 238, 1471
BslI CCNNNNNNNGG 2 cut(s) 71, 628
BsmAI GTCTC 2 cut(s) 66, 962
BsmBI CGTCTC 2 cut(s) 66, 962
BsmFI GGGAC 2 cut(s) 238, 1471
BsmI GAATGC 2 cut(s) 163, 1207
BsnI GGCC 6 cut(s) 365, 540, 632, 930, 1358, 1719
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 657, 1489
Bsp143I GATC 5 cut(s) 178, 732, 835, 1121, 1182
BspACI CCGC 3 cut(s) 541, 690, 1926
BspANI GGCC 6 cut(s) 365, 540, 632, 930, 1358, 1719
BspCNI CTCAG 2 cut(s) 726, 860
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 366, 1486
BspMI ACCTGC 1 cut(s) 775
BspOI GCTAGC 1 cut(s) 1833
BspPI GGATC 3 cut(s) 740, 843, 1190
BspQI GCTCTTC 2 cut(s) 237, 1897
BspT107I GGYRCC 1 cut(s) 1484
BspTI CTTAAG 1 cut(s) 1567
BsrDI GCAATG 1 cut(s) 616
BsrFI RCCGGY 1 cut(s) 1354
BsrI ACTGG 5 cut(s) 247, 446, 565, 678, 998
BssAI RCCGGY 1 cut(s) 1354
BssECI CCNNGG 1 cut(s) 865
BssMI GATC 5 cut(s) 178, 732, 835, 1121, 1182
BssSI CACGAG 3 cut(s) 236, 959, 1395
BssT1I CCWWGG 1 cut(s) 865
Bst2BI CACGAG 3 cut(s) 236, 959, 1395
Bst2UI CCWGG 1 cut(s) 1530
Bst4CI ACNGT 4 cut(s) 221, 295, 706, 894
Bst6I CTCTTC 4 cut(s) 237, 267, 1437, 1897
BstAFI CTTAAG 1 cut(s) 1567
BstC8I GCNNGC 5 cut(s) 379, 487, 1356, 1827, 1831
BstDEI CTNAG 5 cut(s) 430, 713, 847, 1210, 1360
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 605, 1114, 1863
BstFNI CGCG 1 cut(s) 543
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 5 cut(s) 181, 735, 838, 1124, 1185
BstMAI GTCTC 2 cut(s) 66, 962
BstMBI GATC 5 cut(s) 178, 732, 835, 1121, 1182
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 546, 1312
BstNI CCWGG 1 cut(s) 1530
BstNSI RCATGY 1 cut(s) 1250
BstSCI CCNGG 1 cut(s) 1528
BstSLI GKGCMC 2 cut(s) 657, 1489
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 7 cut(s) 17, 148, 483, 1262, 1304, 1498, 1501
BstX2I RGATCY 2 cut(s) 732, 835
BstXI CCANNNNNNTGG 1 cut(s) 1753
BstYI RGATCY 2 cut(s) 732, 835
BsuRI GGCC 6 cut(s) 365, 540, 632, 930, 1358, 1719
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 3 cut(s) 605, 1114, 1863
BtsIMutI CAGTG 4 cut(s) 254, 572, 671, 1641
BveI ACCTGC 1 cut(s) 775
Cac8I GCNNGC 5 cut(s) 379, 487, 1356, 1827, 1831
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 1 cut(s) 1354
Cfr13I GGNCC 3 cut(s) 364, 631, 928
Csp6I GTAC 5 cut(s) 130, 702, 752, 981, 1346
CviAII CATG 9 cut(s) 119, 382, 412, 515, 905, 914, 932, 1247, 1800
CviQI GTAC 5 cut(s) 130, 702, 752, 981, 1346
DdeI CTNAG 5 cut(s) 430, 713, 847, 1210, 1360
DpnI GATC 5 cut(s) 180, 734, 837, 1123, 1184
DpnII GATC 5 cut(s) 178, 732, 835, 1121, 1182
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 4 cut(s) 237, 267, 1437, 1897
EarI CTCTTC 4 cut(s) 237, 267, 1437, 1897
Eco130I CCWWGG 1 cut(s) 865
Eco147I AGGCCT 1 cut(s) 1719
Eco57I CTGAAG 2 cut(s) 87, 596
Eco88I CYCGRG 1 cut(s) 188
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 1653
EcoRII CCWGG 1 cut(s) 1528
EcoT14I CCWWGG 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 865
Esp3I CGTCTC 2 cut(s) 66, 962
FaeI CATG 9 cut(s) 122, 385, 415, 518, 908, 917, 935, 1250, 1803
FaqI GGGAC 2 cut(s) 238, 1471
FatI CATG 9 cut(s) 118, 381, 411, 514, 904, 913, 931, 1246, 1799
Fnu4HI GCNGC 8 cut(s) 6, 162, 472, 541, 1251, 1293, 1512, 1515
FokI GGATG 3 cut(s) 612, 1121, 1870
Fsp4HI GCNGC 8 cut(s) 6, 162, 472, 541, 1251, 1293, 1512, 1515
FspBI CTAG 2 cut(s) 809, 1830
GlaI GCGC 1 cut(s) 550
GluI GCNGC 8 cut(s) 6, 162, 472, 541, 1251, 1293, 1512, 1515
GsuI CTGGAG 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 6 cut(s) 365, 540, 632, 930, 1358, 1719
HapII CCGG 1 cut(s) 1355
HhaI GCGC 1 cut(s) 551
Hin1II CATG 9 cut(s) 122, 385, 415, 518, 908, 917, 935, 1250, 1803
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HinfI GANTC 8 cut(s) 191, 442, 523, 880, 900, 1445, 1604, 1796
HpaII CCGG 1 cut(s) 1355
HphI GGTGA 4 cut(s) 161, 1399, 1441, 1717
Hpy166II GTNNAC 1 cut(s) 1893
Hpy188I TCNGA 3 cut(s) 716, 1031, 1603
Hpy188III TCNNGA 7 cut(s) 65, 236, 527, 989, 1012, 1544, 1877
Hpy8I GTNNAC 1 cut(s) 1893
Hpy99I CGWCG 1 cut(s) 1630
HpyAV CCTTC 7 cut(s) 65, 539, 825, 1018, 1034, 1426, 1430
HpyCH4III ACNGT 4 cut(s) 221, 295, 706, 894
HpyCH4IV ACGT 3 cut(s) 955, 969, 1666
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 1312
HpyF3I CTNAG 5 cut(s) 430, 713, 847, 1210, 1360
HpySE526I ACGT 3 cut(s) 955, 969, 1666
Hsp92II CATG 9 cut(s) 122, 385, 415, 518, 908, 917, 935, 1250, 1803
HspAI GCGC 1 cut(s) 549
KroI GCCGGC 1 cut(s) 1354
KroNI GCCGGC 1 cut(s) 1356
Kzo9I GATC 5 cut(s) 178, 732, 835, 1121, 1182
LguI GCTCTTC 2 cut(s) 237, 1897
LmnI GCTCC 2 cut(s) 775, 1928
Lsp1109I GCAGC 7 cut(s) 17, 148, 483, 1262, 1304, 1498, 1501
LweI GCATC 1 cut(s) 1848
MaeI CTAG 2 cut(s) 809, 1830
MaeII ACGT 3 cut(s) 955, 969, 1666
MaeIII GTNAC 5 cut(s) 192, 258, 406, 850, 965
MalI GATC 5 cut(s) 180, 734, 837, 1123, 1184
MboI GATC 5 cut(s) 178, 732, 835, 1121, 1182
MflI RGATCY 2 cut(s) 732, 835
MhlI GDGCHC 2 cut(s) 657, 1489
MlyI GAGTC 4 cut(s) 200, 436, 517, 1454
MmeI TCCRAC 1 cut(s) 1862
MroNI GCCGGC 1 cut(s) 1354
MseI TTAA 7 cut(s) 45, 387, 419, 876, 1275, 1377, 1568
MslI CAYNNNNRTG 3 cut(s) 1706, 1751, 1886
MspA1I CMGCKG 1 cut(s) 474
MspCI CTTAAG 1 cut(s) 1567
MspI CCGG 1 cut(s) 1355
MspR9I CCNGG 1 cut(s) 1530
Mva1269I GAATGC 2 cut(s) 163, 1207
MvaI CCWGG 1 cut(s) 1530
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 546, 1312
NaeI GCCGGC 1 cut(s) 1356
NdeII GATC 5 cut(s) 178, 732, 835, 1121, 1182
NgoMIV GCCGGC 1 cut(s) 1354
NheI GCTAGC 1 cut(s) 1829
NlaIII CATG 9 cut(s) 122, 385, 415, 518, 908, 917, 935, 1250, 1803
NlaIV GGNNCC 2 cut(s) 366, 1486
NmuCI GTSAC 2 cut(s) 192, 965
NspI RCATGY 1 cut(s) 1250
PceI AGGCCT 1 cut(s) 1719
PciSI GCTCTTC 2 cut(s) 237, 1897
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PctI GAATGC 2 cut(s) 163, 1207
PdiI GCCGGC 1 cut(s) 1356
PfeI GAWTC 4 cut(s) 880, 900, 1604, 1796
PkrI GCNGC 8 cut(s) 7, 163, 473, 542, 1252, 1294, 1513, 1516
PleI GAGTC 4 cut(s) 199, 436, 517, 1453
PpsI GAGTC 4 cut(s) 199, 436, 517, 1453
PsiI TTATAA 3 cut(s) 1167, 1370, 1595
Psp6I CCWGG 1 cut(s) 1528
PspGI CCWGG 1 cut(s) 1528
PspN4I GGNNCC 2 cut(s) 366, 1486
PspPI GGNCC 3 cut(s) 364, 631, 928
PsuI RGATCY 2 cut(s) 732, 835
PvuII CAGCTG 1 cut(s) 474
RsaI GTAC 5 cut(s) 131, 703, 753, 982, 1347
RsaNI GTAC 5 cut(s) 130, 702, 752, 981, 1346
RseI CAYNNNNRTG 3 cut(s) 1706, 1751, 1886
SapI GCTCTTC 2 cut(s) 237, 1897
SaqAI TTAA 7 cut(s) 45, 387, 419, 876, 1275, 1377, 1568
SatI GCNGC 8 cut(s) 6, 162, 472, 541, 1251, 1293, 1512, 1515
Sau3AI GATC 5 cut(s) 178, 732, 835, 1121, 1182
Sau96I GGNCC 3 cut(s) 364, 631, 928
SchI GAGTC 4 cut(s) 200, 436, 517, 1454
ScrFI CCNGG 1 cut(s) 1530
SduI GDGCHC 2 cut(s) 657, 1489
SfaNI GCATC 1 cut(s) 1848
SmiMI CAYNNNNRTG 3 cut(s) 1706, 1751, 1886
SmlI CTYRAG 3 cut(s) 525, 1567, 1787
SmoI CTYRAG 3 cut(s) 525, 1567, 1787
SseBI AGGCCT 1 cut(s) 1719
SsiI CCGC 3 cut(s) 541, 690, 1926
SspI AATATT 2 cut(s) 1128, 1911
SspMI CTAG 2 cut(s) 809, 1830
StuI AGGCCT 1 cut(s) 1719
StyD4I CCNGG 1 cut(s) 1528
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 4 cut(s) 221, 295, 706, 894
TaiI ACGT 3 cut(s) 958, 972, 1669
TaqI TCGA 4 cut(s) 181, 829, 1448, 1625
TaqII GACCGA 2 cut(s) 440, 951
TatI WGTACW 3 cut(s) 701, 751, 980
TauI GCSGC 1 cut(s) 543
TfiI GAWTC 4 cut(s) 880, 900, 1604, 1796
Tru1I TTAA 7 cut(s) 45, 387, 419, 876, 1275, 1377, 1568
Tru9I TTAA 7 cut(s) 45, 387, 419, 876, 1275, 1377, 1568
TscAI CASTG 4 cut(s) 254, 572, 678, 1641
TseFI GTSAC 2 cut(s) 192, 965
TseI GCWGC 7 cut(s) 5, 161, 471, 1250, 1292, 1511, 1514
Tsp45I GTSAC 2 cut(s) 192, 965
TspDTI ATGAA 5 cut(s) 201, 930, 1121, 1125, 1466
TspRI CASTG 4 cut(s) 254, 572, 678, 1641
Vha464I CTTAAG 1 cut(s) 1567
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 5 cut(s) 400, 587, 796, 948, 1653
XceI RCATGY 1 cut(s) 1250
XspI CTAG 2 cut(s) 809, 1830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.