Domain of unknown function
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 20 - 42 | 3.7e-07 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 29 - 101 | 1.6e-08 | gag-polypeptide of LTR copia-type |
| DUF4219 | PF13961 | 104 - 130 | 1.6e-06 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 117 - 194 | 6e-10 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1278 |
| AciI | CCGC | 3 cut(s) | 495, 697, 1775 |
| AclI | AACGTT | 1 cut(s) | 1616 |
| AclWI | GGATC | 3 cut(s) | 672, 1163, 1604 |
| AcoI | YGGCCR | 1 cut(s) | 1920 |
| AcuI | CTGAAG | 3 cut(s) | 123, 387, 609 |
| AcvI | CACGTG | 1 cut(s) | 1223 |
| AfaI | GTAC | 1 cut(s) | 1551 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 605, 708, 709, 1001, 1178, 1909 |
| AflIII | ACRYGT | 2 cut(s) | 1220, 1222 |
| AhlI | ACTAGT | 1 cut(s) | 1405 |
| AjiI | CACGTC | 3 cut(s) | 643, 811, 826 |
| AjnI | CCWGG | 2 cut(s) | 464, 545 |
| Alw26I | GTCTC | 4 cut(s) | 266, 802, 816, 860 |
| AlwI | GGATC | 3 cut(s) | 672, 1163, 1604 |
| Ama87I | CYCGRG | 1 cut(s) | 819 |
| AoxI | GGCC | 3 cut(s) | 468, 699, 1920 |
| ApaI | GGGCCC | 1 cut(s) | 703 |
| ApeKI | GCWGC | 5 cut(s) | 5, 749, 850, 1664, 1768 |
| AspLEI | GCGC | 2 cut(s) | 777, 1103 |
| AspS9I | GGNCC | 4 cut(s) | 468, 699, 700, 1820 |
| AsuC2I | CCSGG | 3 cut(s) | 703, 1238, 1903 |
| AsuHPI | GGTGA | 3 cut(s) | 161, 358, 475 |
| AvaI | CYCGRG | 1 cut(s) | 819 |
| AvaII | GGWCC | 1 cut(s) | 1820 |
| BaeGI | GKGCMC | 1 cut(s) | 703 |
| BalI | TGGCCA | 1 cut(s) | 1922 |
| BanII | GRGCYC | 1 cut(s) | 703 |
| BbrPI | CACGTG | 1 cut(s) | 1223 |
| BbsI | GAAGAC | 3 cut(s) | 423, 504, 1933 |
| BbvI | GCAGC | 5 cut(s) | 17, 761, 837, 1651, 1755 |
| BccI | CCATC | 4 cut(s) | 247, 653, 796, 1473 |
| BceAI | ACGGC | 6 cut(s) | 549, 622, 795, 838, 918, 1114 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1358, 1392 |
| BciT130I | CCWGG | 2 cut(s) | 466, 547 |
| BclI | TGATCA | 3 cut(s) | 1626, 1636, 1807 |
| BcnI | CCSGG | 3 cut(s) | 703, 1238, 1903 |
| BcoDI | GTCTC | 4 cut(s) | 266, 802, 816, 860 |
| BcuI | ACTAGT | 1 cut(s) | 1405 |
| BfaI | CTAG | 6 cut(s) | 413, 731, 884, 1188, 1406, 1475 |
| BfmI | CTRYAG | 3 cut(s) | 9, 1160, 1326 |
| BfoI | RGCGCY | 1 cut(s) | 1104 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 772 |
| BisI | GCNGC | 5 cut(s) | 6, 750, 851, 1665, 1769 |
| BlpI | GCTNAGC | 2 cut(s) | 1104, 1668 |
| BlsI | GCNGC | 5 cut(s) | 7, 751, 852, 1666, 1770 |
| BmcAI | AGTACT | 1 cut(s) | 1551 |
| Bme1390I | CCNGG | 5 cut(s) | 466, 547, 703, 1238, 1903 |
| Bme18I | GGWCC | 1 cut(s) | 1820 |
| BmeT110I | CYCGRG | 1 cut(s) | 819 |
| BmgBI | CACGTC | 3 cut(s) | 643, 811, 826 |
| BmgT120I | GGNCC | 4 cut(s) | 468, 699, 700, 1820 |
| BmiI | GGNNCC | 1 cut(s) | 701 |
| BmrFI | CCNGG | 5 cut(s) | 466, 547, 703, 1238, 1903 |
| BmrI | ACTGGG | 1 cut(s) | 15 |
| BmsI | GCATC | 5 cut(s) | 253, 493, 532, 880, 1378 |
| BmuI | ACTGGG | 1 cut(s) | 15 |
| BpiI | GAAGAC | 3 cut(s) | 423, 504, 1933 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 908, 940 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1104, 1668 |
| BpuMI | CCSGG | 3 cut(s) | 703, 1238, 1903 |
| Bsa29I | ATCGAT | 1 cut(s) | 621 |
| BsaAI | YACGTR | 1 cut(s) | 1223 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaJI | CCNNGG | 5 cut(s) | 129, 186, 465, 1000, 1901 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 605, 708, 709, 1001, 1178, 1909 |
| Bse1I | ACTGG | 1 cut(s) | 21 |
| Bse3DI | GCAATG | 3 cut(s) | 338, 1182, 1721 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseBI | CCWGG | 2 cut(s) | 466, 547 |
| BseCI | ATCGAT | 1 cut(s) | 621 |
| BseDI | CCNNGG | 5 cut(s) | 129, 186, 465, 1000, 1901 |
| BseGI | GGATG | 8 cut(s) | 121, 180, 258, 268, 508, 739, 1246, 1587 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 605, 708, 709, 1001, 1178, 1909 |
| BseMI | GCAATG | 3 cut(s) | 338, 1182, 1721 |
| BseMII | CTCAG | 4 cut(s) | 498, 939, 1095, 1659 |
| BseNI | ACTGG | 1 cut(s) | 21 |
| BseRI | GAGGAG | 3 cut(s) | 593, 857, 1105 |
| BseSI | GKGCMC | 1 cut(s) | 703 |
| BseXI | GCAGC | 5 cut(s) | 17, 761, 837, 1651, 1755 |
| BshFI | GGCC | 3 cut(s) | 470, 701, 1922 |
| BshVI | ATCGAT | 1 cut(s) | 621 |
| BsiHKCI | CYCGRG | 1 cut(s) | 819 |
| BsiSI | CCGG | 3 cut(s) | 703, 1237, 1903 |
| BslFI | GGGAC | 6 cut(s) | 2, 392, 1109, 1180, 1416, 1772 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 605, 708, 709, 1001, 1178, 1909 |
| BsmAI | GTCTC | 4 cut(s) | 266, 802, 816, 860 |
| BsmBI | CGTCTC | 1 cut(s) | 816 |
| BsmFI | GGGAC | 6 cut(s) | 2, 392, 1109, 1180, 1416, 1772 |
| BsmI | GAATGC | 1 cut(s) | 556 |
| BsnI | GGCC | 3 cut(s) | 470, 701, 1922 |
| BsoBI | CYCGRG | 1 cut(s) | 819 |
| Bsp120I | GGGCCC | 1 cut(s) | 699 |
| Bsp1286I | GDGCHC | 1 cut(s) | 703 |
| Bsp143I | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1104, 1668 |
| BspACI | CCGC | 3 cut(s) | 495, 697, 1775 |
| BspANI | GGCC | 3 cut(s) | 470, 701, 1922 |
| BspCNI | CTCAG | 4 cut(s) | 499, 938, 1096, 1660 |
| BspDI | ATCGAT | 1 cut(s) | 621 |
| BspLI | GGNNCC | 1 cut(s) | 701 |
| BspPI | GGATC | 3 cut(s) | 672, 1163, 1604 |
| BspQI | GCTCTTC | 1 cut(s) | 198 |
| BsrDI | GCAATG | 3 cut(s) | 338, 1182, 1721 |
| BsrI | ACTGG | 1 cut(s) | 21 |
| BssECI | CCNNGG | 5 cut(s) | 129, 186, 465, 1000, 1901 |
| BssMI | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| BssT1I | CCWWGG | 1 cut(s) | 186 |
| Bst2UI | CCWGG | 2 cut(s) | 466, 547 |
| Bst4CI | ACNGT | 4 cut(s) | 13, 133, 288, 1494 |
| Bst6I | CTCTTC | 3 cut(s) | 198, 1338, 1559 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 263 |
| BstBAI | YACGTR | 1 cut(s) | 1223 |
| BstC8I | GCNNGC | 6 cut(s) | 363, 699, 768, 1029, 1250, 1773 |
| BstDEI | CTNAG | 5 cut(s) | 507, 785, 925, 1104, 1668 |
| BstDSI | CCRYGG | 2 cut(s) | 129, 1000 |
| BstF5I | GGATG | 8 cut(s) | 121, 180, 258, 268, 508, 739, 1246, 1587 |
| BstH2I | RGCGCY | 1 cut(s) | 1104 |
| BstHHI | GCGC | 2 cut(s) | 777, 1103 |
| BstKTI | GATC | 9 cut(s) | 667, 939, 1171, 1354, 1480, 1612, 1629, 1639, 1810 |
| BstMAI | GTCTC | 4 cut(s) | 266, 802, 816, 860 |
| BstMBI | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 197, 263, 542, 551, 703, 772, 1028, 1534 |
| BstNI | CCWGG | 2 cut(s) | 466, 547 |
| BstNSI | RCATGY | 6 cut(s) | 479, 1031, 1486, 1580, 1768, 1775 |
| BstSCI | CCNGG | 5 cut(s) | 464, 545, 701, 1236, 1901 |
| BstSFI | CTRYAG | 3 cut(s) | 9, 1160, 1326 |
| BstSLI | GKGCMC | 1 cut(s) | 703 |
| BstV1I | GCAGC | 5 cut(s) | 17, 761, 837, 1651, 1755 |
| BstV2I | GAAGAC | 3 cut(s) | 423, 504, 1933 |
| BstX2I | RGATCY | 1 cut(s) | 1168 |
| BstYI | RGATCY | 1 cut(s) | 1168 |
| Bsu15I | ATCGAT | 1 cut(s) | 621 |
| BsuRI | GGCC | 3 cut(s) | 470, 701, 1922 |
| BsuTUI | ATCGAT | 1 cut(s) | 621 |
| BtgI | CCRYGG | 2 cut(s) | 129, 1000 |
| BtgZI | GCGATG | 1 cut(s) | 903 |
| BtrI | CACGTC | 3 cut(s) | 643, 811, 826 |
| BtsCI | GGATG | 8 cut(s) | 121, 180, 258, 268, 508, 739, 1246, 1587 |
| BtsIMutI | CAGTG | 1 cut(s) | 28 |
| Cac8I | GCNNGC | 6 cut(s) | 363, 699, 768, 1029, 1250, 1773 |
| CfoI | GCGC | 2 cut(s) | 777, 1103 |
| Cfr13I | GGNCC | 4 cut(s) | 468, 699, 700, 1820 |
| ClaI | ATCGAT | 1 cut(s) | 621 |
| CseI | GACGC | 1 cut(s) | 1661 |
| Csp6I | GTAC | 1 cut(s) | 1550 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 999, 1034 |
| CviQI | GTAC | 1 cut(s) | 1550 |
| DdeI | CTNAG | 5 cut(s) | 507, 785, 925, 1104, 1668 |
| DpnI | GATC | 9 cut(s) | 666, 938, 1170, 1353, 1479, 1611, 1628, 1638, 1809 |
| DpnII | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| EaeI | YGGCCR | 1 cut(s) | 1920 |
| Eam1104I | CTCTTC | 3 cut(s) | 198, 1338, 1559 |
| EarI | CTCTTC | 3 cut(s) | 198, 1338, 1559 |
| Eco130I | CCWWGG | 1 cut(s) | 186 |
| Eco24I | GRGCYC | 1 cut(s) | 703 |
| Eco47I | GGWCC | 1 cut(s) | 1820 |
| Eco57I | CTGAAG | 3 cut(s) | 123, 387, 609 |
| Eco72I | CACGTG | 1 cut(s) | 1223 |
| Eco88I | CYCGRG | 1 cut(s) | 819 |
| EcoO109I | RGGNCCY | 1 cut(s) | 468 |
| EcoRII | CCWGG | 2 cut(s) | 464, 545 |
| EcoT14I | CCWWGG | 1 cut(s) | 186 |
| EcoT38I | GRGCYC | 1 cut(s) | 703 |
| ErhI | CCWWGG | 1 cut(s) | 186 |
| Esp3I | CGTCTC | 1 cut(s) | 816 |
| FaqI | GGGAC | 6 cut(s) | 2, 392, 1109, 1180, 1416, 1772 |
| FauI | CCCGC | 2 cut(s) | 488, 690 |
| FauNDI | CATATG | 1 cut(s) | 162 |
| FbaI | TGATCA | 3 cut(s) | 1626, 1636, 1807 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 750, 851, 1665, 1769 |
| FokI | GGATG | 8 cut(s) | 128, 187, 265, 275, 515, 726, 1253, 1574 |
| FriOI | GRGCYC | 1 cut(s) | 703 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 750, 851, 1665, 1769 |
| FspBI | CTAG | 6 cut(s) | 413, 731, 884, 1188, 1406, 1475 |
| GlaI | GCGC | 2 cut(s) | 776, 1102 |
| GluI | GCNGC | 5 cut(s) | 6, 750, 851, 1665, 1769 |
| HaeII | RGCGCY | 1 cut(s) | 1104 |
| HaeIII | GGCC | 3 cut(s) | 470, 701, 1922 |
| HapII | CCGG | 3 cut(s) | 703, 1237, 1903 |
| HgaI | GACGC | 1 cut(s) | 1661 |
| HhaI | GCGC | 2 cut(s) | 777, 1103 |
| Hin6I | GCGC | 2 cut(s) | 775, 1101 |
| HinP1I | GCGC | 2 cut(s) | 775, 1101 |
| HincII | GTYRAC | 1 cut(s) | 595 |
| HindII | GTYRAC | 1 cut(s) | 595 |
| HindIII | AAGCTT | 1 cut(s) | 1535 |
| HinfI | GANTC | 6 cut(s) | 509, 614, 629, 923, 1434, 1929 |
| HpaII | CCGG | 3 cut(s) | 703, 1237, 1903 |
| HphI | GGTGA | 3 cut(s) | 161, 358, 475 |
| Hpy166II | GTNNAC | 2 cut(s) | 595, 1490 |
| Hpy188I | TCNGA | 8 cut(s) | 103, 589, 669, 928, 1256, 1365, 1609, 1626 |
| Hpy188III | TCNNGA | 8 cut(s) | 38, 743, 799, 821, 1431, 1475, 1679, 1858 |
| Hpy8I | GTNNAC | 2 cut(s) | 595, 1490 |
| Hpy99I | CGWCG | 1 cut(s) | 1677 |
| HpyAV | CCTTC | 3 cut(s) | 98, 419, 992 |
| HpyCH4III | ACNGT | 4 cut(s) | 13, 133, 288, 1494 |
| HpyCH4IV | ACGT | 6 cut(s) | 381, 642, 810, 825, 1222, 1616 |
| HpyCH4V | TGCA | 8 cut(s) | 26, 200, 475, 677, 1027, 1771, 1831, 1837 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 197, 263, 542, 551, 703, 772, 1028, 1534 |
| HpyF3I | CTNAG | 5 cut(s) | 507, 785, 925, 1104, 1668 |
| HpySE526I | ACGT | 6 cut(s) | 381, 642, 810, 825, 1222, 1616 |
| HspAI | GCGC | 2 cut(s) | 775, 1101 |
| Ksp22I | TGATCA | 3 cut(s) | 1626, 1636, 1807 |
| Kzo9I | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| LguI | GCTCTTC | 1 cut(s) | 198 |
| LmnI | GCTCC | 4 cut(s) | 336, 1467, 1585, 1894 |
| Lsp1109I | GCAGC | 5 cut(s) | 17, 761, 837, 1651, 1755 |
| LweI | GCATC | 5 cut(s) | 253, 493, 532, 880, 1378 |
| MaeI | CTAG | 6 cut(s) | 413, 731, 884, 1188, 1406, 1475 |
| MaeII | ACGT | 6 cut(s) | 381, 642, 810, 825, 1222, 1616 |
| MaeIII | GTNAC | 6 cut(s) | 242, 521, 920, 1066, 1421, 1592 |
| MalI | GATC | 9 cut(s) | 666, 938, 1170, 1353, 1479, 1611, 1628, 1638, 1809 |
| MboI | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| MfeI | CAATTG | 1 cut(s) | 1208 |
| MflI | RGATCY | 1 cut(s) | 1168 |
| MhlI | GDGCHC | 1 cut(s) | 703 |
| MlsI | TGGCCA | 1 cut(s) | 1922 |
| MluCI | AATT | 7 cut(s) | 96, 942, 1060, 1154, 1208, 1457, 1844 |
| MluNI | TGGCCA | 1 cut(s) | 1922 |
| MlyI | GAGTC | 4 cut(s) | 518, 608, 917, 1923 |
| MmeI | TCCRAC | 1 cut(s) | 1637 |
| Mox20I | TGGCCA | 1 cut(s) | 1922 |
| MscI | TGGCCA | 1 cut(s) | 1922 |
| MseI | TTAA | 9 cut(s) | 95, 312, 528, 857, 948, 1059, 1496, 1692, 1796 |
| MslI | CAYNNNNRTG | 1 cut(s) | 251 |
| Msp20I | TGGCCA | 1 cut(s) | 1922 |
| MspI | CCGG | 3 cut(s) | 703, 1237, 1903 |
| MspR9I | CCNGG | 5 cut(s) | 466, 547, 703, 1238, 1903 |
| MunI | CAATTG | 1 cut(s) | 1208 |
| Mva1269I | GAATGC | 1 cut(s) | 556 |
| MvaI | CCWGG | 2 cut(s) | 466, 547 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 197, 263, 542, 551, 703, 772, 1028, 1534 |
| NciI | CCSGG | 3 cut(s) | 703, 1238, 1903 |
| NdeI | CATATG | 1 cut(s) | 162 |
| NdeII | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| NlaIV | GGNNCC | 1 cut(s) | 701 |
| NmuCI | GTSAC | 4 cut(s) | 242, 920, 1421, 1592 |
| NspI | RCATGY | 6 cut(s) | 479, 1031, 1486, 1580, 1768, 1775 |
| PaeI | GCATGC | 2 cut(s) | 1031, 1775 |
| PaeR7I | CTCGAG | 1 cut(s) | 819 |
| PciSI | GCTCTTC | 1 cut(s) | 198 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 618 |
| PctI | GAATGC | 1 cut(s) | 556 |
| PfeI | GAWTC | 2 cut(s) | 629, 1434 |
| PflFI | GACNNNGTC | 1 cut(s) | 383 |
| PfoI | TCCNGGA | 1 cut(s) | 1236 |
| PkrI | GCNGC | 5 cut(s) | 7, 751, 852, 1666, 1770 |
| PleI | GAGTC | 4 cut(s) | 517, 608, 917, 1923 |
| PmaCI | CACGTG | 1 cut(s) | 1223 |
| PmlI | CACGTG | 1 cut(s) | 1223 |
| PpsI | GAGTC | 4 cut(s) | 517, 608, 917, 1923 |
| Ppu21I | YACGTR | 1 cut(s) | 1223 |
| PsiI | TTATAA | 1 cut(s) | 1278 |
| Psp1406I | AACGTT | 1 cut(s) | 1616 |
| Psp6I | CCWGG | 2 cut(s) | 464, 545 |
| PspCI | CACGTG | 1 cut(s) | 1223 |
| PspGI | CCWGG | 2 cut(s) | 464, 545 |
| PspN4I | GGNNCC | 1 cut(s) | 701 |
| PspOMI | GGGCCC | 1 cut(s) | 699 |
| PspPI | GGNCC | 4 cut(s) | 468, 699, 700, 1820 |
| PsuI | RGATCY | 1 cut(s) | 1168 |
| PsyI | GACNNNGTC | 1 cut(s) | 383 |
| RsaI | GTAC | 1 cut(s) | 1551 |
| RsaNI | GTAC | 1 cut(s) | 1550 |
| RseI | CAYNNNNRTG | 1 cut(s) | 251 |
| SapI | GCTCTTC | 1 cut(s) | 198 |
| SaqAI | TTAA | 9 cut(s) | 95, 312, 528, 857, 948, 1059, 1496, 1692, 1796 |
| SatI | GCNGC | 5 cut(s) | 6, 750, 851, 1665, 1769 |
| Sau3AI | GATC | 9 cut(s) | 664, 936, 1168, 1351, 1477, 1609, 1626, 1636, 1807 |
| Sau96I | GGNCC | 4 cut(s) | 468, 699, 700, 1820 |
| ScaI | AGTACT | 1 cut(s) | 1551 |
| SchI | GAGTC | 4 cut(s) | 518, 608, 917, 1923 |
| ScrFI | CCNGG | 5 cut(s) | 466, 547, 703, 1238, 1903 |
| SduI | GDGCHC | 1 cut(s) | 703 |
| SfaNI | GCATC | 5 cut(s) | 253, 493, 532, 880, 1378 |
| SfcI | CTRYAG | 3 cut(s) | 9, 1160, 1326 |
| Sfr274I | CTCGAG | 1 cut(s) | 819 |
| SinI | GGWCC | 1 cut(s) | 1820 |
| SlaI | CTCGAG | 1 cut(s) | 819 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 251 |
| SmlI | CTYRAG | 1 cut(s) | 819 |
| SmoI | CTYRAG | 1 cut(s) | 819 |
| SpeI | ACTAGT | 1 cut(s) | 1405 |
| SphI | GCATGC | 2 cut(s) | 1031, 1775 |
| Sse9I | AATT | 7 cut(s) | 96, 942, 1060, 1154, 1208, 1457, 1844 |
| SsiI | CCGC | 3 cut(s) | 495, 697, 1775 |
| SspI | AATATT | 1 cut(s) | 1687 |
| SspMI | CTAG | 6 cut(s) | 413, 731, 884, 1188, 1406, 1475 |
| StyD4I | CCNGG | 5 cut(s) | 464, 545, 701, 1236, 1901 |
| StyI | CCWWGG | 1 cut(s) | 186 |
| TaaI | ACNGT | 4 cut(s) | 13, 133, 288, 1494 |
| TaiI | ACGT | 6 cut(s) | 384, 645, 813, 828, 1225, 1619 |
| TaqI | TCGA | 7 cut(s) | 621, 800, 820, 939, 1140, 1542, 1816 |
| TasI | AATT | 7 cut(s) | 96, 942, 1060, 1154, 1208, 1457, 1844 |
| TatI | WGTACW | 1 cut(s) | 1549 |
| TfiI | GAWTC | 2 cut(s) | 629, 1434 |
| Tru1I | TTAA | 9 cut(s) | 95, 312, 528, 857, 948, 1059, 1496, 1692, 1796 |
| Tru9I | TTAA | 9 cut(s) | 95, 312, 528, 857, 948, 1059, 1496, 1692, 1796 |
| TscAI | CASTG | 1 cut(s) | 28 |
| TseFI | GTSAC | 4 cut(s) | 242, 920, 1421, 1592 |
| TseI | GCWGC | 5 cut(s) | 5, 749, 850, 1664, 1768 |
| Tsp45I | GTSAC | 4 cut(s) | 242, 920, 1421, 1592 |
| TspDTI | ATGAA | 9 cut(s) | 78, 185, 191, 875, 1137, 1325, 1469, 1757, 1885 |
| TspGWI | ACGGA | 2 cut(s) | 230, 1580 |
| TspRI | CASTG | 1 cut(s) | 28 |
| Tth111I | GACNNNGTC | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 1 cut(s) | 1820 |
| XbaI | TCTAGA | 1 cut(s) | 1474 |
| XceI | RCATGY | 6 cut(s) | 479, 1031, 1486, 1580, 1768, 1775 |
| XhoI | CTCGAG | 1 cut(s) | 819 |
| XspI | CTAG | 6 cut(s) | 413, 731, 884, 1188, 1406, 1475 |
| ZrmI | AGTACT | 1 cut(s) | 1551 |