protein ubiquitination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 665, 841 |
| AccIII | TCCGGA | 1 cut(s) | 240 |
| AciI | CCGC | 2 cut(s) | 791, 834 |
| AclWI | GGATC | 3 cut(s) | 114, 481, 494 |
| AcoI | YGGCCR | 1 cut(s) | 762 |
| AcsI | RAATTY | 2 cut(s) | 273, 382 |
| AcvI | CACGTG | 2 cut(s) | 299, 367 |
| AcyI | GRCGYC | 1 cut(s) | 709 |
| AfaI | GTAC | 2 cut(s) | 439, 472 |
| AflIII | ACRYGT | 1 cut(s) | 364 |
| AgsI | TTSAA | 1 cut(s) | 533 |
| AjnI | CCWGG | 2 cut(s) | 36, 185 |
| AluBI | AGCT | 3 cut(s) | 101, 443, 497 |
| AluI | AGCT | 3 cut(s) | 101, 443, 497 |
| Alw26I | GTCTC | 4 cut(s) | 25, 80, 614, 626 |
| AlwI | GGATC | 3 cut(s) | 114, 481, 494 |
| Ama87I | CYCGRG | 1 cut(s) | 676 |
| Aor13HI | TCCGGA | 1 cut(s) | 240 |
| AoxI | GGCC | 3 cut(s) | 189, 433, 762 |
| ApoI | RAATTY | 2 cut(s) | 273, 382 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 834, 866 |
| AspLEI | GCGC | 3 cut(s) | 665, 683, 841 |
| AspS9I | GGNCC | 1 cut(s) | 189 |
| AsuC2I | CCSGG | 4 cut(s) | 521, 660, 677, 678 |
| AvaI | CYCGRG | 1 cut(s) | 676 |
| BalI | TGGCCA | 1 cut(s) | 764 |
| BamHI | GGATCC | 1 cut(s) | 486 |
| BbrPI | CACGTG | 2 cut(s) | 299, 367 |
| BccI | CCATC | 2 cut(s) | 419, 443 |
| BceAI | ACGGC | 1 cut(s) | 420 |
| BciT130I | CCWGG | 2 cut(s) | 38, 187 |
| BcnI | CCSGG | 4 cut(s) | 521, 660, 677, 678 |
| BcoDI | GTCTC | 4 cut(s) | 25, 80, 614, 626 |
| BfaI | CTAG | 1 cut(s) | 498 |
| BfoI | RGCGCY | 1 cut(s) | 684 |
| BisI | GCNGC | 1 cut(s) | 791 |
| BlsI | GCNGC | 1 cut(s) | 792 |
| Bme1390I | CCNGG | 6 cut(s) | 38, 187, 521, 660, 677, 678 |
| BmeT110I | CYCGRG | 1 cut(s) | 676 |
| BmgT120I | GGNCC | 1 cut(s) | 189 |
| BmiI | GGNNCC | 3 cut(s) | 488, 673, 737 |
| BmrFI | CCNGG | 6 cut(s) | 38, 187, 521, 660, 677, 678 |
| BmsI | GCATC | 2 cut(s) | 320, 473 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| BpuMI | CCSGG | 4 cut(s) | 521, 660, 677, 678 |
| BsaAI | YACGTR | 2 cut(s) | 299, 367 |
| BsaHI | GRCGYC | 1 cut(s) | 709 |
| BsaJI | CCNNGG | 6 cut(s) | 186, 504, 675, 676, 755, 765 |
| BsaWI | WCCGGW | 2 cut(s) | 240, 326 |
| Bse1I | ACTGG | 1 cut(s) | 488 |
| BseAI | TCCGGA | 1 cut(s) | 240 |
| BseBI | CCWGG | 2 cut(s) | 38, 187 |
| BseDI | CCNNGG | 6 cut(s) | 186, 504, 675, 676, 755, 765 |
| BseGI | GGATG | 2 cut(s) | 335, 464 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 1 cut(s) | 488 |
| Bsh1236I | CGCG | 2 cut(s) | 665, 841 |
| BshFI | GGCC | 3 cut(s) | 191, 435, 764 |
| BsiHKCI | CYCGRG | 1 cut(s) | 676 |
| BsiSI | CCGG | 5 cut(s) | 241, 327, 520, 659, 677 |
| BslFI | GGGAC | 2 cut(s) | 232, 696 |
| BsmAI | GTCTC | 4 cut(s) | 25, 80, 614, 626 |
| BsmFI | GGGAC | 2 cut(s) | 232, 696 |
| BsmI | GAATGC | 1 cut(s) | 187 |
| BsnI | GGCC | 3 cut(s) | 191, 435, 764 |
| BsoBI | CYCGRG | 1 cut(s) | 676 |
| Bsp13I | TCCGGA | 1 cut(s) | 240 |
| Bsp1407I | TGTACA | 1 cut(s) | 470 |
| Bsp143I | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| Bsp19I | CCATGG | 2 cut(s) | 504, 765 |
| BspACI | CCGC | 2 cut(s) | 791, 834 |
| BspANI | GGCC | 3 cut(s) | 191, 435, 764 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspEI | TCCGGA | 1 cut(s) | 240 |
| BspFNI | CGCG | 2 cut(s) | 665, 841 |
| BspLI | GGNNCC | 3 cut(s) | 488, 673, 737 |
| BspPI | GGATC | 3 cut(s) | 114, 481, 494 |
| BsrGI | TGTACA | 1 cut(s) | 470 |
| BsrI | ACTGG | 1 cut(s) | 488 |
| BssECI | CCNNGG | 6 cut(s) | 186, 504, 675, 676, 755, 765 |
| BssMI | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| BssNI | GRCGYC | 1 cut(s) | 709 |
| BssT1I | CCWWGG | 3 cut(s) | 504, 755, 765 |
| Bst2UI | CCWGG | 2 cut(s) | 38, 187 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 1 cut(s) | 617 |
| BstACI | GRCGYC | 1 cut(s) | 709 |
| BstAUI | TGTACA | 1 cut(s) | 470 |
| BstBAI | YACGTR | 2 cut(s) | 299, 367 |
| BstC8I | GCNNGC | 1 cut(s) | 762 |
| BstDEI | CTNAG | 3 cut(s) | 102, 222, 830 |
| BstDSI | CCRYGG | 2 cut(s) | 504, 765 |
| BstF5I | GGATG | 2 cut(s) | 335, 464 |
| BstFNI | CGCG | 2 cut(s) | 665, 841 |
| BstH2I | RGCGCY | 1 cut(s) | 684 |
| BstHHI | GCGC | 3 cut(s) | 665, 683, 841 |
| BstKTI | GATC | 6 cut(s) | 109, 254, 291, 340, 489, 867 |
| BstMAI | GTCTC | 4 cut(s) | 25, 80, 614, 626 |
| BstMBI | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 164, 197, 263, 796 |
| BstNI | CCWGG | 2 cut(s) | 38, 187 |
| BstNSI | RCATGY | 1 cut(s) | 200 |
| BstSCI | CCNGG | 6 cut(s) | 36, 185, 519, 658, 675, 676 |
| BstUI | CGCG | 2 cut(s) | 665, 841 |
| BstX2I | RGATCY | 2 cut(s) | 106, 486 |
| BstYI | RGATCY | 2 cut(s) | 106, 486 |
| BsuRI | GGCC | 3 cut(s) | 191, 435, 764 |
| BtgI | CCRYGG | 2 cut(s) | 504, 765 |
| BtsCI | GGATG | 2 cut(s) | 335, 464 |
| BtsIMutI | CAGTG | 1 cut(s) | 481 |
| Cac8I | GCNNGC | 1 cut(s) | 762 |
| CfoI | GCGC | 3 cut(s) | 665, 683, 841 |
| Cfr13I | GGNCC | 1 cut(s) | 189 |
| Cfr9I | CCCGGG | 1 cut(s) | 676 |
| CseI | GACGC | 1 cut(s) | 698 |
| Csp6I | GTAC | 2 cut(s) | 438, 471 |
| CviAII | CATG | 8 cut(s) | 197, 267, 355, 505, 629, 732, 766, 796 |
| CviQI | GTAC | 2 cut(s) | 438, 471 |
| DdeI | CTNAG | 3 cut(s) | 102, 222, 830 |
| DpnI | GATC | 6 cut(s) | 108, 253, 290, 339, 488, 866 |
| DpnII | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| EaeI | YGGCCR | 1 cut(s) | 762 |
| Eam1104I | CTCTTC | 1 cut(s) | 617 |
| EarI | CTCTTC | 1 cut(s) | 617 |
| Eco130I | CCWWGG | 3 cut(s) | 504, 755, 765 |
| Eco72I | CACGTG | 2 cut(s) | 299, 367 |
| Eco88I | CYCGRG | 1 cut(s) | 676 |
| EcoO109I | RGGNCCY | 1 cut(s) | 189 |
| EcoRII | CCWGG | 2 cut(s) | 36, 185 |
| EcoT14I | CCWWGG | 3 cut(s) | 504, 755, 765 |
| ErhI | CCWWGG | 3 cut(s) | 504, 755, 765 |
| FaeI | CATG | 8 cut(s) | 200, 270, 358, 508, 632, 735, 769, 799 |
| FaqI | GGGAC | 2 cut(s) | 232, 696 |
| FatI | CATG | 8 cut(s) | 196, 266, 354, 504, 628, 731, 765, 795 |
| Fnu4HI | GCNGC | 1 cut(s) | 791 |
| FokI | GGATG | 2 cut(s) | 342, 451 |
| Fsp4HI | GCNGC | 1 cut(s) | 791 |
| FspBI | CTAG | 1 cut(s) | 498 |
| GlaI | GCGC | 3 cut(s) | 664, 682, 840 |
| GluI | GCNGC | 1 cut(s) | 791 |
| HaeII | RGCGCY | 1 cut(s) | 684 |
| HaeIII | GGCC | 3 cut(s) | 191, 435, 764 |
| HapII | CCGG | 5 cut(s) | 241, 327, 520, 659, 677 |
| HgaI | GACGC | 1 cut(s) | 698 |
| HhaI | GCGC | 3 cut(s) | 665, 683, 841 |
| Hin1I | GRCGYC | 1 cut(s) | 709 |
| Hin1II | CATG | 8 cut(s) | 200, 270, 358, 508, 632, 735, 769, 799 |
| Hin6I | GCGC | 3 cut(s) | 663, 681, 839 |
| HinP1I | GCGC | 3 cut(s) | 663, 681, 839 |
| HinfI | GANTC | 3 cut(s) | 152, 634, 720 |
| HpaII | CCGG | 5 cut(s) | 241, 327, 520, 659, 677 |
| Hpy188I | TCNGA | 2 cut(s) | 81, 251 |
| Hpy188III | TCNNGA | 1 cut(s) | 241 |
| Hpy99I | CGWCG | 1 cut(s) | 397 |
| HpyAV | CCTTC | 1 cut(s) | 353 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4IV | ACGT | 3 cut(s) | 298, 366, 604 |
| HpyCH4V | TGCA | 8 cut(s) | 29, 158, 200, 333, 464, 512, 731, 824 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 164, 197, 263, 796 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 222, 830 |
| HpySE526I | ACGT | 3 cut(s) | 298, 366, 604 |
| Hsp92I | GRCGYC | 1 cut(s) | 709 |
| Hsp92II | CATG | 8 cut(s) | 200, 270, 358, 508, 632, 735, 769, 799 |
| HspAI | GCGC | 3 cut(s) | 663, 681, 839 |
| Kpn2I | TCCGGA | 1 cut(s) | 240 |
| Kzo9I | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| LmnI | GCTCC | 1 cut(s) | 836 |
| LweI | GCATC | 2 cut(s) | 320, 473 |
| MaeI | CTAG | 1 cut(s) | 498 |
| MaeII | ACGT | 3 cut(s) | 298, 366, 604 |
| MaeIII | GTNAC | 1 cut(s) | 299 |
| MalI | GATC | 6 cut(s) | 108, 253, 290, 339, 488, 866 |
| MboI | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| MboII | GAAGA | 2 cut(s) | 332, 604 |
| MfeI | CAATTG | 1 cut(s) | 30 |
| MflI | RGATCY | 2 cut(s) | 106, 486 |
| MlsI | TGGCCA | 1 cut(s) | 764 |
| MluCI | AATT | 7 cut(s) | 30, 201, 259, 273, 382, 553, 748 |
| MluNI | TGGCCA | 1 cut(s) | 764 |
| MlyI | GAGTC | 2 cut(s) | 628, 714 |
| MnlI | CCTC | 4 cut(s) | 109, 144, 165, 564 |
| Mox20I | TGGCCA | 1 cut(s) | 764 |
| MroI | TCCGGA | 1 cut(s) | 240 |
| MscI | TGGCCA | 1 cut(s) | 764 |
| MseI | TTAA | 2 cut(s) | 48, 204 |
| Msp20I | TGGCCA | 1 cut(s) | 764 |
| MspI | CCGG | 5 cut(s) | 241, 327, 520, 659, 677 |
| MspR9I | CCNGG | 6 cut(s) | 38, 187, 521, 660, 677, 678 |
| MunI | CAATTG | 1 cut(s) | 30 |
| Mva1269I | GAATGC | 1 cut(s) | 187 |
| MvaI | CCWGG | 2 cut(s) | 38, 187 |
| MvnI | CGCG | 2 cut(s) | 665, 841 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 164, 197, 263, 796 |
| NciI | CCSGG | 4 cut(s) | 521, 660, 677, 678 |
| NcoI | CCATGG | 2 cut(s) | 504, 765 |
| NdeII | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| NlaIII | CATG | 8 cut(s) | 200, 270, 358, 508, 632, 735, 769, 799 |
| NlaIV | GGNNCC | 3 cut(s) | 488, 673, 737 |
| NmuCI | GTSAC | 1 cut(s) | 299 |
| NspI | RCATGY | 1 cut(s) | 200 |
| PctI | GAATGC | 1 cut(s) | 187 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PfoI | TCCNGGA | 1 cut(s) | 36 |
| PkrI | GCNGC | 1 cut(s) | 792 |
| PleI | GAGTC | 2 cut(s) | 628, 714 |
| PmaCI | CACGTG | 2 cut(s) | 299, 367 |
| PmlI | CACGTG | 2 cut(s) | 299, 367 |
| PpsI | GAGTC | 2 cut(s) | 628, 714 |
| Ppu21I | YACGTR | 2 cut(s) | 299, 367 |
| Psp6I | CCWGG | 2 cut(s) | 36, 185 |
| PspCI | CACGTG | 2 cut(s) | 299, 367 |
| PspGI | CCWGG | 2 cut(s) | 36, 185 |
| PspN4I | GGNNCC | 3 cut(s) | 488, 673, 737 |
| PspPI | GGNCC | 1 cut(s) | 189 |
| PsuI | RGATCY | 2 cut(s) | 106, 486 |
| RsaI | GTAC | 2 cut(s) | 439, 472 |
| RsaNI | GTAC | 2 cut(s) | 438, 471 |
| SaqAI | TTAA | 2 cut(s) | 48, 204 |
| SatI | GCNGC | 1 cut(s) | 791 |
| Sau3AI | GATC | 6 cut(s) | 106, 251, 288, 337, 486, 864 |
| Sau96I | GGNCC | 1 cut(s) | 189 |
| SchI | GAGTC | 2 cut(s) | 628, 714 |
| ScrFI | CCNGG | 6 cut(s) | 38, 187, 521, 660, 677, 678 |
| SetI | ASST | 9 cut(s) | 103, 120, 136, 301, 369, 445, 499, 607, 741 |
| SfaNI | GCATC | 2 cut(s) | 320, 473 |
| SmaI | CCCGGG | 1 cut(s) | 678 |
| Sse9I | AATT | 7 cut(s) | 30, 201, 259, 273, 382, 553, 748 |
| SsiI | CCGC | 2 cut(s) | 791, 834 |
| SspMI | CTAG | 1 cut(s) | 498 |
| StyD4I | CCNGG | 6 cut(s) | 36, 185, 519, 658, 675, 676 |
| StyI | CCWWGG | 3 cut(s) | 504, 755, 765 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaiI | ACGT | 3 cut(s) | 301, 369, 607 |
| TaqI | TCGA | 3 cut(s) | 395, 583, 723 |
| TasI | AATT | 7 cut(s) | 30, 201, 259, 273, 382, 553, 748 |
| TatI | WGTACW | 1 cut(s) | 470 |
| TauI | GCSGC | 1 cut(s) | 793 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 2 cut(s) | 48, 204 |
| Tru9I | TTAA | 2 cut(s) | 48, 204 |
| TscAI | CASTG | 1 cut(s) | 488 |
| TseFI | GTSAC | 1 cut(s) | 299 |
| Tsp45I | GTSAC | 1 cut(s) | 299 |
| TspGWI | ACGGA | 1 cut(s) | 792 |
| TspMI | CCCGGG | 1 cut(s) | 676 |
| TspRI | CASTG | 1 cut(s) | 488 |
| XapI | RAATTY | 2 cut(s) | 273, 382 |
| XceI | RCATGY | 1 cut(s) | 200 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 802 |
| XmaI | CCCGGG | 1 cut(s) | 676 |
| XspI | CTAG | 1 cut(s) | 498 |