protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 164 - 267 | 1.4e-11 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 218 |
| AccIII | TCCGGA | 1 cut(s) | 680 |
| AciI | CCGC | 2 cut(s) | 338, 440 |
| AclWI | GGATC | 2 cut(s) | 231, 886 |
| AfaI | GTAC | 5 cut(s) | 256, 393, 520, 532, 629 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 311 |
| AflIII | ACRYGT | 2 cut(s) | 162, 216 |
| AgsI | TTSAA | 4 cut(s) | 170, 373, 965, 980 |
| AhlI | ACTAGT | 1 cut(s) | 973 |
| AjnI | CCWGG | 1 cut(s) | 574 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 32, 33, 64, 65 |
| AluBI | AGCT | 1 cut(s) | 74 |
| AluI | AGCT | 1 cut(s) | 74 |
| Alw26I | GTCTC | 1 cut(s) | 964 |
| AlwI | GGATC | 2 cut(s) | 231, 886 |
| Aor13HI | TCCGGA | 1 cut(s) | 680 |
| AoxI | GGCC | 2 cut(s) | 85, 763 |
| ApeKI | GCWGC | 1 cut(s) | 818 |
| AsuC2I | CCSGG | 1 cut(s) | 811 |
| BbvI | GCAGC | 1 cut(s) | 805 |
| BccI | CCATC | 1 cut(s) | 796 |
| BciT130I | CCWGG | 1 cut(s) | 576 |
| BcnI | CCSGG | 1 cut(s) | 811 |
| BcoDI | GTCTC | 1 cut(s) | 964 |
| BcuI | ACTAGT | 1 cut(s) | 973 |
| BfaI | CTAG | 2 cut(s) | 560, 974 |
| BfmI | CTRYAG | 2 cut(s) | 75, 258 |
| BisI | GCNGC | 2 cut(s) | 339, 819 |
| BlsI | GCNGC | 2 cut(s) | 340, 820 |
| BmcAI | AGTACT | 1 cut(s) | 256 |
| Bme1390I | CCNGG | 2 cut(s) | 576, 811 |
| BmiI | GGNNCC | 2 cut(s) | 50, 583 |
| BmrFI | CCNGG | 2 cut(s) | 576, 811 |
| BmsI | GCATC | 3 cut(s) | 325, 665, 897 |
| BpuEI | CTTGAG | 1 cut(s) | 857 |
| BpuMI | CCSGG | 1 cut(s) | 811 |
| BsaJI | CCNNGG | 2 cut(s) | 546, 983 |
| BsaWI | WCCGGW | 1 cut(s) | 680 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 311 |
| Bse3DI | GCAATG | 2 cut(s) | 341, 371 |
| BseAI | TCCGGA | 1 cut(s) | 680 |
| BseBI | CCWGG | 1 cut(s) | 576 |
| BseDI | CCNNGG | 2 cut(s) | 546, 983 |
| BseGI | GGATG | 2 cut(s) | 188, 858 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 311 |
| BseMI | GCAATG | 2 cut(s) | 341, 371 |
| BseMII | CTCAG | 2 cut(s) | 684, 732 |
| BseXI | GCAGC | 1 cut(s) | 805 |
| Bsh1236I | CGCG | 1 cut(s) | 218 |
| BshFI | GGCC | 2 cut(s) | 87, 765 |
| BsiSI | CCGG | 2 cut(s) | 681, 810 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 311 |
| BsmAI | GTCTC | 1 cut(s) | 964 |
| BsmI | GAATGC | 2 cut(s) | 563, 600 |
| BsnI | GGCC | 2 cut(s) | 87, 765 |
| Bsp13I | TCCGGA | 1 cut(s) | 680 |
| Bsp1407I | TGTACA | 1 cut(s) | 518 |
| Bsp143I | GATC | 4 cut(s) | 56, 223, 322, 891 |
| Bsp19I | CCATGG | 1 cut(s) | 546 |
| BspACI | CCGC | 2 cut(s) | 338, 440 |
| BspANI | GGCC | 2 cut(s) | 87, 765 |
| BspCNI | CTCAG | 2 cut(s) | 683, 731 |
| BspEI | TCCGGA | 1 cut(s) | 680 |
| BspFNI | CGCG | 1 cut(s) | 218 |
| BspLI | GGNNCC | 2 cut(s) | 50, 583 |
| BspPI | GGATC | 2 cut(s) | 231, 886 |
| BsrDI | GCAATG | 2 cut(s) | 341, 371 |
| BsrGI | TGTACA | 1 cut(s) | 518 |
| BssECI | CCNNGG | 2 cut(s) | 546, 983 |
| BssMI | GATC | 4 cut(s) | 56, 223, 322, 891 |
| BssT1I | CCWWGG | 1 cut(s) | 546 |
| Bst2UI | CCWGG | 1 cut(s) | 576 |
| Bst4CI | ACNGT | 4 cut(s) | 259, 523, 571, 634 |
| Bst6I | CTCTTC | 2 cut(s) | 483, 617 |
| BstAUI | TGTACA | 1 cut(s) | 518 |
| BstC8I | GCNNGC | 1 cut(s) | 920 |
| BstDEI | CTNAG | 4 cut(s) | 44, 670, 718, 770 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstEII | GGTNACC | 1 cut(s) | 300 |
| BstF5I | GGATG | 2 cut(s) | 188, 858 |
| BstFNI | CGCG | 1 cut(s) | 218 |
| BstKTI | GATC | 4 cut(s) | 59, 226, 325, 894 |
| BstMAI | GTCTC | 1 cut(s) | 964 |
| BstMBI | GATC | 4 cut(s) | 56, 223, 322, 891 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 771, 806, 815 |
| BstNI | CCWGG | 1 cut(s) | 576 |
| BstNSI | RCATGY | 1 cut(s) | 166 |
| BstPI | GGTNACC | 1 cut(s) | 300 |
| BstSCI | CCNGG | 2 cut(s) | 574, 809 |
| BstSFI | CTRYAG | 2 cut(s) | 75, 258 |
| BstUI | CGCG | 1 cut(s) | 218 |
| BstV1I | GCAGC | 1 cut(s) | 805 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 802 |
| BsuRI | GGCC | 2 cut(s) | 87, 765 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtgZI | GCGATG | 1 cut(s) | 815 |
| BtsCI | GGATG | 2 cut(s) | 188, 858 |
| BtsI | GCAGTG | 1 cut(s) | 533 |
| BtsIMutI | CAGTG | 1 cut(s) | 533 |
| Cac8I | GCNNGC | 1 cut(s) | 920 |
| CseI | GACGC | 2 cut(s) | 155, 640 |
| Csp6I | GTAC | 5 cut(s) | 255, 392, 519, 531, 628 |
| CviAII | CATG | 5 cut(s) | 89, 163, 443, 547, 648 |
| CviJI | RGCY | 5 cut(s) | 74, 87, 207, 765, 774 |
| CviKI_1 | RGCY | 5 cut(s) | 74, 87, 207, 765, 774 |
| CviQI | GTAC | 5 cut(s) | 255, 392, 519, 531, 628 |
| DdeI | CTNAG | 4 cut(s) | 44, 670, 718, 770 |
| DpnI | GATC | 4 cut(s) | 58, 225, 324, 893 |
| DpnII | GATC | 4 cut(s) | 56, 223, 322, 891 |
| Eam1104I | CTCTTC | 2 cut(s) | 483, 617 |
| EarI | CTCTTC | 2 cut(s) | 483, 617 |
| Eco130I | CCWWGG | 1 cut(s) | 546 |
| Eco91I | GGTNACC | 1 cut(s) | 300 |
| EcoO65I | GGTNACC | 1 cut(s) | 300 |
| EcoRII | CCWGG | 1 cut(s) | 574 |
| EcoT14I | CCWWGG | 1 cut(s) | 546 |
| ErhI | CCWWGG | 1 cut(s) | 546 |
| FaeI | CATG | 5 cut(s) | 92, 166, 446, 550, 651 |
| FatI | CATG | 5 cut(s) | 88, 162, 442, 546, 647 |
| FauNDI | CATATG | 1 cut(s) | 108 |
| Fnu4HI | GCNGC | 2 cut(s) | 339, 819 |
| FokI | GGATG | 2 cut(s) | 195, 865 |
| Fsp4HI | GCNGC | 2 cut(s) | 339, 819 |
| FspBI | CTAG | 2 cut(s) | 560, 974 |
| GluI | GCNGC | 2 cut(s) | 339, 819 |
| HaeIII | GGCC | 2 cut(s) | 87, 765 |
| HapII | CCGG | 2 cut(s) | 681, 810 |
| HgaI | GACGC | 2 cut(s) | 155, 640 |
| Hin1II | CATG | 5 cut(s) | 92, 166, 446, 550, 651 |
| HincII | GTYRAC | 1 cut(s) | 103 |
| HindII | GTYRAC | 1 cut(s) | 103 |
| HinfI | GANTC | 2 cut(s) | 491, 684 |
| HpaII | CCGG | 2 cut(s) | 681, 810 |
| Hpy166II | GTNNAC | 3 cut(s) | 103, 533, 630 |
| Hpy188I | TCNGA | 1 cut(s) | 721 |
| Hpy188III | TCNNGA | 2 cut(s) | 125, 681 |
| Hpy8I | GTNNAC | 3 cut(s) | 103, 533, 630 |
| Hpy99I | CGWCG | 1 cut(s) | 656 |
| HpyAV | CCTTC | 3 cut(s) | 291, 676, 776 |
| HpyCH4III | ACNGT | 4 cut(s) | 259, 523, 571, 634 |
| HpyCH4IV | ACGT | 1 cut(s) | 712 |
| HpyCH4V | TGCA | 7 cut(s) | 134, 346, 352, 364, 509, 902, 910 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 771, 806, 815 |
| HpyF3I | CTNAG | 4 cut(s) | 44, 670, 718, 770 |
| HpySE526I | ACGT | 1 cut(s) | 712 |
| Hsp92II | CATG | 5 cut(s) | 92, 166, 446, 550, 651 |
| Kpn2I | TCCGGA | 1 cut(s) | 680 |
| Kzo9I | GATC | 4 cut(s) | 56, 223, 322, 891 |
| LmnI | GCTCC | 1 cut(s) | 950 |
| LpnPI | CCDG | 9 cut(s) | 65, 138, 561, 582, 588, 694, 823, 932, 939 |
| Lsp1109I | GCAGC | 1 cut(s) | 805 |
| LweI | GCATC | 3 cut(s) | 325, 665, 897 |
| MaeI | CTAG | 2 cut(s) | 560, 974 |
| MaeII | ACGT | 1 cut(s) | 712 |
| MaeIII | GTNAC | 4 cut(s) | 10, 300, 541, 713 |
| MalI | GATC | 4 cut(s) | 58, 225, 324, 893 |
| MboI | GATC | 4 cut(s) | 56, 223, 322, 891 |
| MboII | GAAGA | 4 cut(s) | 469, 500, 604, 851 |
| MluCI | AATT | 4 cut(s) | 63, 274, 622, 873 |
| MluI | ACGCGT | 1 cut(s) | 216 |
| MlyI | GAGTC | 2 cut(s) | 500, 678 |
| MmeI | TCCRAC | 2 cut(s) | 160, 201 |
| MnlI | CCTC | 8 cut(s) | 77, 315, 370, 405, 475, 785, 832, 993 |
| MroI | TCCGGA | 1 cut(s) | 680 |
| MseI | TTAA | 7 cut(s) | 30, 269, 330, 473, 735, 872, 991 |
| MslI | CAYNNNNRTG | 3 cut(s) | 752, 785, 800 |
| MspI | CCGG | 2 cut(s) | 681, 810 |
| MspR9I | CCNGG | 2 cut(s) | 576, 811 |
| Mva1269I | GAATGC | 2 cut(s) | 563, 600 |
| MvaI | CCWGG | 1 cut(s) | 576 |
| MvnI | CGCG | 1 cut(s) | 218 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 771, 806, 815 |
| NciI | CCSGG | 1 cut(s) | 811 |
| NcoI | CCATGG | 1 cut(s) | 546 |
| NdeI | CATATG | 1 cut(s) | 108 |
| NdeII | GATC | 4 cut(s) | 56, 223, 322, 891 |
| NlaIII | CATG | 5 cut(s) | 92, 166, 446, 550, 651 |
| NlaIV | GGNNCC | 2 cut(s) | 50, 583 |
| NmeAIII | GCCGAG | 1 cut(s) | 964 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| NspI | RCATGY | 1 cut(s) | 166 |
| PciI | ACATGT | 1 cut(s) | 162 |
| PctI | GAATGC | 2 cut(s) | 563, 600 |
| PflFI | GACNNNGTC | 1 cut(s) | 240 |
| PkrI | GCNGC | 2 cut(s) | 340, 820 |
| PleI | GAGTC | 2 cut(s) | 499, 678 |
| PpsI | GAGTC | 2 cut(s) | 499, 678 |
| PscI | ACATGT | 1 cut(s) | 162 |
| Psp6I | CCWGG | 1 cut(s) | 574 |
| PspEI | GGTNACC | 1 cut(s) | 300 |
| PspGI | CCWGG | 1 cut(s) | 574 |
| PspN4I | GGNNCC | 2 cut(s) | 50, 583 |
| PsyI | GACNNNGTC | 1 cut(s) | 240 |
| RsaI | GTAC | 5 cut(s) | 256, 393, 520, 532, 629 |
| RsaNI | GTAC | 5 cut(s) | 255, 392, 519, 531, 628 |
| RseI | CAYNNNNRTG | 3 cut(s) | 752, 785, 800 |
| SaqAI | TTAA | 7 cut(s) | 30, 269, 330, 473, 735, 872, 991 |
| SatI | GCNGC | 2 cut(s) | 339, 819 |
| Sau3AI | GATC | 4 cut(s) | 56, 223, 322, 891 |
| ScaI | AGTACT | 1 cut(s) | 256 |
| SchI | GAGTC | 2 cut(s) | 500, 678 |
| ScrFI | CCNGG | 2 cut(s) | 576, 811 |
| SfaNI | GCATC | 3 cut(s) | 325, 665, 897 |
| SfcI | CTRYAG | 2 cut(s) | 75, 258 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 752, 785, 800 |
| SmlI | CTYRAG | 1 cut(s) | 836 |
| SmoI | CTYRAG | 1 cut(s) | 836 |
| SpeI | ACTAGT | 1 cut(s) | 973 |
| Sse9I | AATT | 4 cut(s) | 63, 274, 622, 873 |
| SsiI | CCGC | 2 cut(s) | 338, 440 |
| SspMI | CTAG | 2 cut(s) | 560, 974 |
| StyD4I | CCNGG | 2 cut(s) | 574, 809 |
| StyI | CCWWGG | 1 cut(s) | 546 |
| TaaI | ACNGT | 4 cut(s) | 259, 523, 571, 634 |
| TaiI | ACGT | 1 cut(s) | 715 |
| TaqI | TCGA | 1 cut(s) | 70 |
| TasI | AATT | 4 cut(s) | 63, 274, 622, 873 |
| TatI | WGTACW | 3 cut(s) | 254, 518, 530 |
| TauI | GCSGC | 1 cut(s) | 341 |
| Tru1I | TTAA | 7 cut(s) | 30, 269, 330, 473, 735, 872, 991 |
| Tru9I | TTAA | 7 cut(s) | 30, 269, 330, 473, 735, 872, 991 |
| TscAI | CASTG | 1 cut(s) | 540 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 1 cut(s) | 818 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspDTI | ATGAA | 5 cut(s) | 48, 173, 459, 512, 636 |
| TspGWI | ACGGA | 3 cut(s) | 268, 327, 963 |
| TspRI | CASTG | 1 cut(s) | 540 |
| Tth111I | GACNNNGTC | 1 cut(s) | 240 |
| XceI | RCATGY | 1 cut(s) | 166 |
| XspI | CTAG | 2 cut(s) | 560, 974 |
| ZrmI | AGTACT | 1 cut(s) | 256 |