Rroxscaffold_4G00313180

Domain of unknown function

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
36429229 .. 36435493
6265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313180.1

Sequence Viewer

Length: 1767 bp
ATGGCAGCCACAGTAGTCCCTAGTGTAATGGTTAATGTTAAAGCTCTTAACCAAGATAACTACAACTACTGGATCTTTCGTGTGAAAACATACTTGCTGGCTGAAGATTTGTGGGAAGTTGTCGAAGGCACAAATAAACCTCCAAAAGTAGAAGACCCTGAATTCATGGCTTGGCAGAAAATTAATGCCAGGGCCTTGCAAGCTATCATCACATTTTGCGGGGAGGATGCTGAGTTCTTTATAAAATACATCACGACGGCGAAAGATGCCTGGGAAATTTTGGTGAAACAGTTCAAGCCTCTTGAAATTTTAGAAAGTCCAGAAGAGACGCATGAAGTTGACTTGAATGACAGAGTCGTTGCAATTGATGATGAAGACTTGGACGTAGAAGGGGTTGGAGAACACGCACGTTTCTTTGCGGAGGTGTTCGCCCAGAAATGGGAGGCTGTAAAGAAGTTTATTTACGAAAATCCTCGGGAAGTAAGAGCGAAATTTCGAAACACCGACAAGACAGCTCTTCACTTTGCAGTCCAGTTCAGGGACATAACCGGTGTAAAAGAGTTGCTACCGTTTATGAAAAACAAAGACTTAGAAATGCTAGACCGTGATGGACATACTGCTCTTTCTATGGCTATACTAGAAAAGGATACGGATGTGATGACCGCTATTGCTAGACCAAAAATGGCTACTTGTCTCTATGATGCTACTCCACTTGAAAAGCTTAAGAATAGGGACCGAGCCGAGCTACTTTCCACAAGTTTGAGAGTAAAACATTTAGATGTTTCGTTGGACTTAATACAGCGTTTTCCAAACTTGGCTATTGCTCAAGACCACTCTGGTGAATCCCCTTTAAATGCATTGGCTAGTACGGCTGGATTATTCCTAAATGCTAGCCAGCTCGGAATATGGGAACGATGGATTTATAATTGTATACACATACCACCCACACCTACACATACCCCTGAGGTTTCTATAGATGTTCAGAAAGAAGAGAAAGATCAAGGCAATCAGAAGAATCTCATTCGCGAAGTATCATGTTACTCTGGAGGACTAGTTGCCAATCTCCTGCACCTTTCCGGAATCAATCGTACGCGTATATATCAAATGAAATTGCTCCATGTCAAGACCATCGAAATTCTACAGTGCATGCTAAAAGTGTTAAAAAGTGAAGATGATCTCAACAATATTAGACAACATAAATTGGTCCAAAAAGCACTCTTCCAAGCAGTGGAACGAGGACATGCTCCATTCATCTACCACTTATTGAGAGGTAATCCAAGGTTCCTAGCGATCACTAATGAACATGACAAGACCGTATTTCAATTTGCTGTTGAGCATCGCCAAGACGAAGTTTTTAACCTGATACATGAATTTGATGAACAAAAGAGAAAAGACATTGTCGGCAGAAAGGATAAGTTTGGGAATAACATGCTGCATGTGGTAGGAAGGTTATCCCCATTAACGCAGATTGCTCACATTCGAGGTGCAGCTTTGCAAATGCAGAAAGAACTCCAATGGTTCAAGAAGGTGGAGCGCATGGCAAGTCCTAAGGATCTTAATTGTATAAATTCATATGGTCGCACACCCCGTGAGGAATTTTCTGTGAACCACAGGAATTTGGTGGAGGCAGGAGAAAAGTCAATTAAAGAAACTGCAACTTCTTCTTCGGCACTTGTAGCTGCTCTTATCATTACCATTATGTTTGCTGCAACAGTGACAACTCCTGGTGGAATTAAGGACATCACAGAGTATTTAAAAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

588

Amino Acids

67.24

Weight (kDa)

6.21

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 16 - 42 1.4e-06 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 29 - 99 1.3e-07 gag-polypeptide of LTR copia-type
Ank_2 PF12796 148 - 223 6.2e-06 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 242, 924
AccB7I CCANNNNNTGG 1 cut(s) 1228
AccI GTMKAC 1 cut(s) 931
AccII CGCG 2 cut(s) 1026, 1093
AccIII TCCGGA 1 cut(s) 1076
AciI CCGC 3 cut(s) 219, 419, 663
AclWI GGATC 2 cut(s) 80, 1560
AcsI RAATTY 9 cut(s) 161, 276, 306, 491, 1134, 1370, 1567, 1595, 1615
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 1589
AfaI GTAC 2 cut(s) 868, 1090
AfiI CCNNNNNNNGG 4 cut(s) 438, 439, 538, 1228
AflII CTTAAG 1 cut(s) 722
AflIII ACRYGT 1 cut(s) 1091
AgeI ACCGGT 1 cut(s) 548
AgsI TTSAA 6 cut(s) 295, 305, 346, 716, 1322, 1522
AhlI ACTAGT 1 cut(s) 1051
AjnI CCWGG 3 cut(s) 188, 269, 1723
AleI CACNNNNGTG 1 cut(s) 837
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
AluBI AGCT 8 cut(s) 44, 203, 515, 721, 745, 898, 1490, 1679
AluI AGCT 8 cut(s) 44, 203, 515, 721, 745, 898, 1490, 1679
Alw26I GTCTC 2 cut(s) 320, 698
AlwI GGATC 2 cut(s) 80, 1560
Ama87I CYCGRG 1 cut(s) 474
Aor13HI TCCGGA 1 cut(s) 1076
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 5 cut(s) 5, 1432, 1487, 1679, 1706
ApoI RAATTY 9 cut(s) 161, 276, 306, 491, 1134, 1370, 1567, 1595, 1615
AseI ATTAAT 1 cut(s) 183
AsiGI ACCGGT 1 cut(s) 548
Asp700I GAANNNNTTC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 1536
AspS9I GGNCC 3 cut(s) 192, 733, 1204
AsuHPI GGTGA 2 cut(s) 295, 851
AsuII TTCGAA 1 cut(s) 496
AsuNHI GCTAGC 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 474
AvaII GGWCC 2 cut(s) 733, 1204
AxyI CCTNAGG 2 cut(s) 963, 1548
BaeI ACNNNNGTAYC 2 cut(s) 639, 672
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbsI GAAGAC 2 cut(s) 159, 381
BbvI GCAGC 5 cut(s) 17, 1419, 1499, 1666, 1693
BccI CCATC 3 cut(s) 602, 909, 1136
BceAI ACGGC 2 cut(s) 273, 885
BciT130I CCWGG 3 cut(s) 190, 271, 1725
BciVI GTATCC 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 320, 698
BcuI ACTAGT 1 cut(s) 1051
BfaI CTAG 8 cut(s) 21, 599, 638, 672, 864, 891, 1052, 1286
BfmI CTRYAG 2 cut(s) 972, 1139
BfrI CTTAAG 1 cut(s) 722
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 5 cut(s) 6, 1433, 1488, 1680, 1707
BlsI GCNGC 5 cut(s) 7, 1434, 1489, 1681, 1708
Bme1390I CCNGG 3 cut(s) 190, 271, 1725
Bme18I GGWCC 2 cut(s) 733, 1204
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 3 cut(s) 192, 733, 1204
BmiI GGNNCC 2 cut(s) 734, 1283
BmrFI CCNGG 3 cut(s) 190, 271, 1725
BmsI GCATC 4 cut(s) 217, 256, 691, 1345
BmtI GCTAGC 1 cut(s) 894
BpiI GAAGAC 2 cut(s) 159, 381
BpmI CTGGAG 1 cut(s) 1065
Bpu14I TTCGAA 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 810
BsaJI CCNNGG 4 cut(s) 189, 270, 473, 1277
BsaWI WCCGGW 2 cut(s) 548, 1076
BsaXI ACNNNNNCTCC 2 cut(s) 1038, 1068
Bsc4I CCNNNNNNNGG 4 cut(s) 438, 439, 538, 1228
Bse118I RCCGGY 1 cut(s) 548
Bse1I ACTGG 2 cut(s) 74, 532
Bse21I CCTNAGG 2 cut(s) 963, 1548
BseAI TCCGGA 1 cut(s) 1076
BseBI CCWGG 3 cut(s) 190, 271, 1725
BseDI CCNNGG 4 cut(s) 189, 270, 473, 1277
BseGI GGATG 2 cut(s) 232, 658
BseLI CCNNNNNNNGG 4 cut(s) 438, 439, 538, 1228
BseMII CTCAG 2 cut(s) 222, 954
BseNI ACTGG 2 cut(s) 74, 532
BseXI GCAGC 5 cut(s) 17, 1419, 1499, 1666, 1693
BsgI GTGCAG 2 cut(s) 1052, 1506
Bsh1236I CGCG 2 cut(s) 1026, 1093
BshFI GGCC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 548
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 2 cut(s) 549, 1077
BsiWI CGTACG 1 cut(s) 1088
BslFI GGGAC 3 cut(s) 2, 554, 746
BslI CCNNNNNNNGG 4 cut(s) 438, 439, 538, 1228
BsmAI GTCTC 2 cut(s) 320, 698
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 3 cut(s) 2, 554, 746
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 496
Bsp13I TCCGGA 1 cut(s) 1076
Bsp143I GATC 5 cut(s) 72, 997, 1174, 1290, 1552
Bsp68I TCGCGA 1 cut(s) 1026
BspACI CCGC 3 cut(s) 219, 419, 663
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 2 cut(s) 223, 955
BspEI TCCGGA 1 cut(s) 1076
BspFNI CGCG 2 cut(s) 1026, 1093
BspLI GGNNCC 2 cut(s) 734, 1283
BspOI GCTAGC 1 cut(s) 894
BspPI GGATC 2 cut(s) 80, 1560
BspQI GCTCTTC 1 cut(s) 522
BspT104I TTCGAA 1 cut(s) 496
BspTI CTTAAG 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 548
BsrI ACTGG 2 cut(s) 74, 532
BssAI RCCGGY 1 cut(s) 548
BssECI CCNNGG 4 cut(s) 189, 270, 473, 1277
BssMI GATC 5 cut(s) 72, 997, 1174, 1290, 1552
BssNAI GTATAC 1 cut(s) 932
BssT1I CCWWGG 1 cut(s) 1277
Bst1107I GTATAC 1 cut(s) 932
Bst2UI CCWGG 3 cut(s) 190, 271, 1725
Bst4CI ACNGT 7 cut(s) 13, 291, 570, 605, 1143, 1315, 1714
Bst6I CTCTTC 5 cut(s) 318, 522, 984, 1223, 1755
BstAFI CTTAAG 1 cut(s) 722
BstBI TTCGAA 1 cut(s) 496
BstC8I GCNNGC 5 cut(s) 99, 201, 892, 896, 1148
BstDEI CTNAG 4 cut(s) 231, 589, 963, 1548
BstF5I GGATG 2 cut(s) 232, 658
BstFNI CGCG 2 cut(s) 1026, 1093
BstHHI GCGC 1 cut(s) 1536
BstKTI GATC 5 cut(s) 75, 1000, 1177, 1293, 1555
BstMAI GTCTC 2 cut(s) 320, 698
BstMBI GATC 5 cut(s) 72, 997, 1174, 1290, 1552
BstMWI GCNNNNNNNGC 4 cut(s) 200, 266, 869, 1676
BstNI CCWGG 3 cut(s) 190, 271, 1725
BstNSI RCATGY 4 cut(s) 1150, 1244, 1432, 1439
BstSCI CCNGG 3 cut(s) 188, 269, 1723
BstSFI CTRYAG 2 cut(s) 972, 1139
BstUI CGCG 2 cut(s) 1026, 1093
BstV1I GCAGC 5 cut(s) 17, 1419, 1499, 1666, 1693
BstV2I GAAGAC 2 cut(s) 159, 381
BstX2I RGATCY 2 cut(s) 72, 1552
BstYI RGATCY 2 cut(s) 72, 1552
BstZ17I GTATAC 1 cut(s) 932
Bsu36I CCTNAGG 2 cut(s) 963, 1548
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 1322
BtsCI GGATG 2 cut(s) 232, 658
BtsI GCAGTG 1 cut(s) 1233
BtsIMutI CAGTG 3 cut(s) 1148, 1233, 1719
BtuMI TCGCGA 1 cut(s) 1026
Cac8I GCNNGC 5 cut(s) 99, 201, 892, 896, 1148
CfoI GCGC 1 cut(s) 1536
Cfr10I RCCGGY 1 cut(s) 548
Cfr13I GGNCC 3 cut(s) 192, 733, 1204
CseI GACGC 1 cut(s) 337
Csp6I GTAC 2 cut(s) 867, 1089
CspAI ACCGGT 1 cut(s) 548
CviQI GTAC 2 cut(s) 867, 1089
DdeI CTNAG 4 cut(s) 231, 589, 963, 1548
DpnI GATC 5 cut(s) 74, 999, 1176, 1292, 1554
DpnII GATC 5 cut(s) 72, 997, 1174, 1290, 1552
DraI TTTAAA 2 cut(s) 852, 1755
DraIII CACNNNGTG 1 cut(s) 1589
Eam1104I CTCTTC 5 cut(s) 318, 522, 984, 1223, 1755
EarI CTCTTC 5 cut(s) 318, 522, 984, 1223, 1755
Eco130I CCWWGG 1 cut(s) 1277
Eco47I GGWCC 2 cut(s) 733, 1204
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 2 cut(s) 963, 1548
Eco88I CYCGRG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 188, 269, 1723
EcoT14I CCWWGG 1 cut(s) 1277
EcoT22I ATGCAT 1 cut(s) 859
ErhI CCWWGG 1 cut(s) 1277
Esp3I CGTCTC 1 cut(s) 320
FaqI GGGAC 3 cut(s) 2, 554, 746
FauI CCCGC 1 cut(s) 212
FauNDI CATATG 1 cut(s) 1573
FblI GTMKAC 1 cut(s) 931
Fnu4HI GCNGC 5 cut(s) 6, 1433, 1488, 1680, 1707
FokI GGATG 2 cut(s) 239, 665
Fsp4HI GCNGC 5 cut(s) 6, 1433, 1488, 1680, 1707
FspBI CTAG 8 cut(s) 21, 599, 638, 672, 864, 891, 1052, 1286
GlaI GCGC 1 cut(s) 1535
GluI GCNGC 5 cut(s) 6, 1433, 1488, 1680, 1707
GsuI CTGGAG 1 cut(s) 1065
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 549, 1077
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 1536
Hin6I GCGC 1 cut(s) 1534
HinP1I GCGC 1 cut(s) 1534
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 4 cut(s) 354, 842, 1015, 1080
HpaII CCGG 2 cut(s) 549, 1077
HphI GGTGA 2 cut(s) 295, 851
Hpy166II GTNNAC 3 cut(s) 340, 932, 1606
Hpy188I TCNGA 3 cut(s) 902, 984, 1011
Hpy8I GTNNAC 3 cut(s) 340, 932, 1606
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 119, 383, 1440, 1519
HpyCH4III ACNGT 7 cut(s) 13, 291, 570, 605, 1143, 1315, 1714
HpyCH4IV ACGT 2 cut(s) 384, 409
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 266, 869, 1676
HpyF3I CTNAG 4 cut(s) 231, 589, 963, 1548
HpySE526I ACGT 2 cut(s) 384, 409
HspAI GCGC 1 cut(s) 1534
Kpn2I TCCGGA 1 cut(s) 1076
Kzo9I GATC 5 cut(s) 72, 997, 1174, 1290, 1552
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 3 cut(s) 1119, 1249, 1531
Lsp1109I GCAGC 5 cut(s) 17, 1419, 1499, 1666, 1693
LweI GCATC 4 cut(s) 217, 256, 691, 1345
MaeI CTAG 8 cut(s) 21, 599, 638, 672, 864, 891, 1052, 1286
MaeII ACGT 2 cut(s) 384, 409
MaeIII GTNAC 2 cut(s) 1037, 1714
MalI GATC 5 cut(s) 74, 999, 1176, 1292, 1554
MboI GATC 5 cut(s) 72, 997, 1174, 1290, 1552
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 2 cut(s) 72, 1552
MluI ACGCGT 1 cut(s) 1091
MlyI GAGTC 1 cut(s) 363
MmeI TCCRAC 2 cut(s) 376, 768
Mph1103I ATGCAT 1 cut(s) 859
MroI TCCGGA 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 290
MslI CAYNNNNRTG 2 cut(s) 777, 837
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 2 cut(s) 549, 1077
MspR9I CCNGG 3 cut(s) 190, 271, 1725
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 3 cut(s) 190, 271, 1725
MvnI CGCG 2 cut(s) 1026, 1093
MwoI GCNNNNNNNGC 4 cut(s) 200, 266, 869, 1676
NdeI CATATG 1 cut(s) 1573
NdeII GATC 5 cut(s) 72, 997, 1174, 1290, 1552
NheI GCTAGC 1 cut(s) 890
NlaIV GGNNCC 2 cut(s) 734, 1283
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 1714
NruI TCGCGA 1 cut(s) 1026
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 4 cut(s) 1150, 1244, 1432, 1439
NspV TTCGAA 1 cut(s) 496
OliI CACNNNNGTG 1 cut(s) 837
PaeI GCATGC 1 cut(s) 1150
PciSI GCTCTTC 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 1585
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 3 cut(s) 842, 1015, 1080
Pfl23II CGTACG 1 cut(s) 1088
PflFI GACNNNGTC 2 cut(s) 353, 1397
PflMI CCANNNNNTGG 1 cut(s) 1228
PinAI ACCGGT 1 cut(s) 548
PkrI GCNGC 5 cut(s) 7, 1434, 1489, 1681, 1708
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 183
PsiI TTATAA 2 cut(s) 242, 924
Psp6I CCWGG 3 cut(s) 188, 269, 1723
PspGI CCWGG 3 cut(s) 188, 269, 1723
PspLI CGTACG 1 cut(s) 1088
PspN4I GGNNCC 2 cut(s) 734, 1283
PspPI GGNCC 3 cut(s) 192, 733, 1204
PsuI RGATCY 2 cut(s) 72, 1552
PsyI GACNNNGTC 2 cut(s) 353, 1397
RruI TCGCGA 1 cut(s) 1026
RsaI GTAC 2 cut(s) 868, 1090
RsaNI GTAC 2 cut(s) 867, 1089
RseI CAYNNNNRTG 2 cut(s) 777, 837
SapI GCTCTTC 1 cut(s) 522
SatI GCNGC 5 cut(s) 6, 1433, 1488, 1680, 1707
Sau3AI GATC 5 cut(s) 72, 997, 1174, 1290, 1552
Sau96I GGNCC 3 cut(s) 192, 733, 1204
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 3 cut(s) 190, 271, 1725
SfaNI GCATC 4 cut(s) 217, 256, 691, 1345
SfcI CTRYAG 2 cut(s) 972, 1139
SfuI TTCGAA 1 cut(s) 496
SinI GGWCC 2 cut(s) 733, 1204
SmiMI CAYNNNNRTG 2 cut(s) 777, 837
SmlI CTYRAG 2 cut(s) 722, 825
SmoI CTYRAG 2 cut(s) 722, 825
SpeI ACTAGT 1 cut(s) 1051
SphI GCATGC 1 cut(s) 1150
SsiI CCGC 3 cut(s) 219, 419, 663
SspI AATATT 1 cut(s) 1186
SspMI CTAG 8 cut(s) 21, 599, 638, 672, 864, 891, 1052, 1286
StyD4I CCNGG 3 cut(s) 188, 269, 1723
StyI CCWWGG 1 cut(s) 1277
TaaI ACNGT 7 cut(s) 13, 291, 570, 605, 1143, 1315, 1714
TaiI ACGT 2 cut(s) 387, 412
TaqI TCGA 4 cut(s) 123, 496, 1131, 1480
TaqII GACCGA 1 cut(s) 750
TfiI GAWTC 3 cut(s) 842, 1015, 1080
TscAI CASTG 3 cut(s) 1148, 1233, 1719
TseFI GTSAC 1 cut(s) 1714
TseI GCWGC 5 cut(s) 5, 1432, 1487, 1679, 1706
Tsp45I GTSAC 1 cut(s) 1714
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 3 cut(s) 1148, 1233, 1719
Tth111I GACNNNGTC 2 cut(s) 353, 1397
Van91I CCANNNNNTGG 1 cut(s) 1228
Vha464I CTTAAG 1 cut(s) 722
VpaK11BI GGWCC 2 cut(s) 733, 1204
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 9 cut(s) 161, 276, 306, 491, 1134, 1370, 1567, 1595, 1615
XceI RCATGY 4 cut(s) 1150, 1244, 1432, 1439
XmiI GTMKAC 1 cut(s) 931
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 8 cut(s) 21, 599, 638, 672, 864, 891, 1052, 1286
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.