protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ank_2 | PF12796 | 194 - 266 | 1.7e-11 | Ankyrin repeats (3 copies) |
| Ank_5 | PF13857 | 211 - 254 | 8.9e-06 | Ankyrin repeats (many copies) |
| Ank_4 | PF13637 | 216 - 264 | 3.5e-06 | Ankyrin repeats (many copies) |
| Ank_2 | PF12796 | 236 - 302 | 5e-10 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 274 - 338 | 5.2e-07 | Ankyrin repeats (3 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 799 |
| AccBSI | CCGCTC | 2 cut(s) | 374, 749 |
| AccII | CGCG | 1 cut(s) | 659 |
| AciI | CCGC | 6 cut(s) | 276, 374, 657, 747, 1246, 1286 |
| AclWI | GGATC | 4 cut(s) | 643, 1499, 1612, 1749 |
| AcoI | YGGCCR | 1 cut(s) | 1386 |
| AcsI | RAATTY | 9 cut(s) | 134, 161, 262, 1232, 1343, 1475, 1637, 1851, 1948 |
| AcuI | CTGAAG | 1 cut(s) | 2085 |
| AcyI | GRCGYC | 1 cut(s) | 783 |
| AdeI | CACNNNGTG | 1 cut(s) | 1914 |
| AfaI | GTAC | 5 cut(s) | 249, 606, 765, 1112, 1404 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 309 |
| AflII | CTTAAG | 1 cut(s) | 1456 |
| AgsI | TTSAA | 8 cut(s) | 62, 982, 1371, 1397, 1576, 1637, 1835, 1982 |
| AhlI | ACTAGT | 1 cut(s) | 1687 |
| AjnI | CCWGG | 1 cut(s) | 302 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 494, 526, 2109 |
| AleI | CACNNNNGTG | 1 cut(s) | 1098 |
| Alw21I | GWGCWC | 1 cut(s) | 73 |
| Alw26I | GTCTC | 3 cut(s) | 805, 1098, 1440 |
| AlwI | GGATC | 4 cut(s) | 643, 1499, 1612, 1749 |
| AoxI | GGCC | 2 cut(s) | 1243, 1386 |
| ApeKI | GCWGC | 5 cut(s) | 12, 299, 626, 869, 1940 |
| ApoI | RAATTY | 9 cut(s) | 134, 161, 262, 1232, 1343, 1475, 1637, 1851, 1948 |
| AspA2I | CCTAGG | 1 cut(s) | 1585 |
| AspLEI | GCGC | 1 cut(s) | 1310 |
| AspS9I | GGNCC | 1 cut(s) | 1243 |
| AsuHPI | GGTGA | 5 cut(s) | 16, 488, 566, 860, 1667 |
| AsuII | TTCGAA | 1 cut(s) | 1722 |
| AvrII | CCTAGG | 1 cut(s) | 1585 |
| BalI | TGGCCA | 1 cut(s) | 1388 |
| BanI | GGYRCC | 1 cut(s) | 799 |
| BanII | GRGCYC | 1 cut(s) | 2063 |
| BbsI | GAAGAC | 1 cut(s) | 462 |
| Bbv12I | GWGCWC | 1 cut(s) | 73 |
| BbvI | GCAGC | 5 cut(s) | 24, 311, 638, 881, 1927 |
| BccI | CCATC | 5 cut(s) | 266, 1043, 1293, 1542, 2028 |
| BceAI | ACGGC | 4 cut(s) | 34, 770, 787, 1080 |
| BciT130I | CCWGG | 1 cut(s) | 304 |
| BcoDI | GTCTC | 3 cut(s) | 805, 1098, 1440 |
| BcuI | ACTAGT | 1 cut(s) | 1687 |
| BfaI | CTAG | 7 cut(s) | 351, 362, 630, 1070, 1586, 1688, 2088 |
| BfmI | CTRYAG | 3 cut(s) | 639, 1728, 1941 |
| BfoI | RGCGCY | 1 cut(s) | 1311 |
| BfrI | CTTAAG | 1 cut(s) | 1456 |
| BglII | AGATCT | 2 cut(s) | 358, 715 |
| BisI | GCNGC | 8 cut(s) | 13, 300, 627, 657, 870, 1246, 1286, 1941 |
| BlnI | CCTAGG | 1 cut(s) | 1585 |
| BlsI | GCNGC | 8 cut(s) | 14, 301, 628, 658, 871, 1247, 1287, 1942 |
| Bme1390I | CCNGG | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 1 cut(s) | 1243 |
| BmiI | GGNNCC | 1 cut(s) | 801 |
| BmrFI | CCNGG | 1 cut(s) | 304 |
| BmrI | ACTGGG | 1 cut(s) | 568 |
| BmsI | GCATC | 2 cut(s) | 37, 415 |
| BmuI | ACTGGG | 1 cut(s) | 568 |
| BpiI | GAAGAC | 1 cut(s) | 462 |
| BpmI | CTGGAG | 1 cut(s) | 502 |
| Bpu10I | CCTNAGC | 3 cut(s) | 72, 213, 570 |
| Bpu14I | TTCGAA | 1 cut(s) | 1722 |
| BpuEI | CTTGAG | 2 cut(s) | 693, 1508 |
| Bsa29I | ATCGAT | 1 cut(s) | 420 |
| BsaHI | GRCGYC | 1 cut(s) | 783 |
| BsaJI | CCNNGG | 8 cut(s) | 16, 42, 1146, 1268, 1355, 1379, 1389, 1585 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 500, 530, 2029, 2059 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 309 |
| Bse1I | ACTGG | 1 cut(s) | 563 |
| Bse3DI | GCAATG | 2 cut(s) | 651, 2021 |
| BseBI | CCWGG | 1 cut(s) | 304 |
| BseCI | ATCGAT | 1 cut(s) | 420 |
| BseDI | CCNNGG | 8 cut(s) | 16, 42, 1146, 1268, 1355, 1379, 1389, 1585 |
| BseGI | GGATG | 8 cut(s) | 52, 71, 277, 1553, 1635, 1681, 1804, 2039 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 309 |
| BseMI | GCAATG | 2 cut(s) | 651, 2021 |
| BseMII | CTCAG | 1 cut(s) | 86 |
| BseNI | ACTGG | 1 cut(s) | 563 |
| BseRI | GAGGAG | 1 cut(s) | 449 |
| BseXI | GCAGC | 5 cut(s) | 24, 311, 638, 881, 1927 |
| BseYI | CCCAGC | 1 cut(s) | 872 |
| Bsh1236I | CGCG | 1 cut(s) | 659 |
| BshFI | GGCC | 2 cut(s) | 1245, 1388 |
| BshNI | GGYRCC | 1 cut(s) | 799 |
| BshVI | ATCGAT | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 1 cut(s) | 73 |
| BsiSI | CCGG | 1 cut(s) | 623 |
| BslFI | GGGAC | 3 cut(s) | 97, 106, 1373 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 309 |
| BsmAI | GTCTC | 3 cut(s) | 805, 1098, 1440 |
| BsmBI | CGTCTC | 1 cut(s) | 1098 |
| BsmFI | GGGAC | 3 cut(s) | 97, 106, 1373 |
| BsmI | GAATGC | 2 cut(s) | 1451, 1470 |
| BsnI | GGCC | 2 cut(s) | 1245, 1388 |
| Bsp119I | TTCGAA | 1 cut(s) | 1722 |
| Bsp1286I | GDGCHC | 2 cut(s) | 73, 2063 |
| Bsp1407I | TGTACA | 1 cut(s) | 1402 |
| Bsp19I | CCATGG | 1 cut(s) | 1146 |
| BspACI | CCGC | 6 cut(s) | 276, 374, 657, 747, 1246, 1286 |
| BspANI | GGCC | 2 cut(s) | 1245, 1388 |
| BspCNI | CTCAG | 1 cut(s) | 85 |
| BspDI | ATCGAT | 1 cut(s) | 420 |
| BspFNI | CGCG | 1 cut(s) | 659 |
| BspLI | GGNNCC | 1 cut(s) | 801 |
| BspMAI | CTGCAG | 1 cut(s) | 1945 |
| BspPI | GGATC | 4 cut(s) | 643, 1499, 1612, 1749 |
| BspQI | GCTCTTC | 4 cut(s) | 651, 756, 864, 969 |
| BspT104I | TTCGAA | 1 cut(s) | 1722 |
| BspT107I | GGYRCC | 1 cut(s) | 799 |
| BspTI | CTTAAG | 1 cut(s) | 1456 |
| BsrBI | CCGCTC | 2 cut(s) | 374, 749 |
| BsrDI | GCAATG | 2 cut(s) | 651, 2021 |
| BsrGI | TGTACA | 1 cut(s) | 1402 |
| BsrI | ACTGG | 1 cut(s) | 563 |
| BssECI | CCNNGG | 8 cut(s) | 16, 42, 1146, 1268, 1355, 1379, 1389, 1585 |
| BssNI | GRCGYC | 1 cut(s) | 783 |
| BssT1I | CCWWGG | 4 cut(s) | 42, 1146, 1379, 1585 |
| Bst2UI | CCWGG | 1 cut(s) | 304 |
| Bst4CI | ACNGT | 6 cut(s) | 497, 1115, 1393, 1402, 1871, 1968 |
| Bst6I | CTCTTC | 6 cut(s) | 384, 651, 756, 864, 969, 983 |
| BstACI | GRCGYC | 1 cut(s) | 783 |
| BstAFI | CTTAAG | 1 cut(s) | 1456 |
| BstAUI | TGTACA | 1 cut(s) | 1402 |
| BstBI | TTCGAA | 1 cut(s) | 1722 |
| BstC8I | GCNNGC | 2 cut(s) | 1219, 1915 |
| BstDEI | CTNAG | 5 cut(s) | 72, 213, 251, 570, 608 |
| BstDSI | CCRYGG | 5 cut(s) | 16, 1146, 1268, 1355, 1389 |
| BstF5I | GGATG | 8 cut(s) | 52, 71, 277, 1553, 1635, 1681, 1804, 2039 |
| BstFNI | CGCG | 1 cut(s) | 659 |
| BstH2I | RGCGCY | 1 cut(s) | 1311 |
| BstHHI | GCGC | 1 cut(s) | 1310 |
| BstMAI | GTCTC | 3 cut(s) | 805, 1098, 1440 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 18, 77 |
| BstNI | CCWGG | 1 cut(s) | 304 |
| BstNSI | RCATGY | 5 cut(s) | 317, 674, 992, 1225, 1940 |
| BstSCI | CCNGG | 1 cut(s) | 302 |
| BstSFI | CTRYAG | 3 cut(s) | 639, 1728, 1941 |
| BstUI | CGCG | 1 cut(s) | 659 |
| BstV1I | GCAGC | 5 cut(s) | 24, 311, 638, 881, 1927 |
| BstV2I | GAAGAC | 1 cut(s) | 462 |
| BstX2I | RGATCY | 5 cut(s) | 358, 635, 715, 1491, 1741 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1100 |
| BstYI | RGATCY | 5 cut(s) | 358, 635, 715, 1491, 1741 |
| Bsu15I | ATCGAT | 1 cut(s) | 420 |
| BsuRI | GGCC | 2 cut(s) | 1245, 1388 |
| BsuTUI | ATCGAT | 1 cut(s) | 420 |
| BtgI | CCRYGG | 5 cut(s) | 16, 1146, 1268, 1355, 1389 |
| BtsCI | GGATG | 8 cut(s) | 52, 71, 277, 1553, 1635, 1681, 1804, 2039 |
| BtsIMutI | CAGTG | 2 cut(s) | 273, 1120 |
| Cac8I | GCNNGC | 2 cut(s) | 1219, 1915 |
| CfoI | GCGC | 1 cut(s) | 1310 |
| Cfr13I | GGNCC | 1 cut(s) | 1243 |
| ClaI | ATCGAT | 1 cut(s) | 420 |
| CseI | GACGC | 1 cut(s) | 791 |
| Csp6I | GTAC | 5 cut(s) | 248, 605, 764, 1111, 1403 |
| CviQI | GTAC | 5 cut(s) | 248, 605, 764, 1111, 1403 |
| DdeI | CTNAG | 5 cut(s) | 72, 213, 251, 570, 608 |
| DraI | TTTAAA | 1 cut(s) | 1921 |
| DraIII | CACNNNGTG | 1 cut(s) | 1914 |
| EaeI | YGGCCR | 1 cut(s) | 1386 |
| Eam1104I | CTCTTC | 6 cut(s) | 384, 651, 756, 864, 969, 983 |
| EarI | CTCTTC | 6 cut(s) | 384, 651, 756, 864, 969, 983 |
| EciI | GGCGGA | 1 cut(s) | 291 |
| Eco130I | CCWWGG | 4 cut(s) | 42, 1146, 1379, 1585 |
| Eco24I | GRGCYC | 1 cut(s) | 2063 |
| Eco32I | GATATC | 1 cut(s) | 404 |
| Eco57I | CTGAAG | 1 cut(s) | 2085 |
| EcoRI | GAATTC | 1 cut(s) | 161 |
| EcoRII | CCWGG | 1 cut(s) | 302 |
| EcoRV | GATATC | 1 cut(s) | 404 |
| EcoT14I | CCWWGG | 4 cut(s) | 42, 1146, 1379, 1585 |
| EcoT38I | GRGCYC | 1 cut(s) | 2063 |
| ErhI | CCWWGG | 4 cut(s) | 42, 1146, 1379, 1585 |
| Esp3I | CGTCTC | 1 cut(s) | 1098 |
| FaqI | GGGAC | 3 cut(s) | 97, 106, 1373 |
| Fnu4HI | GCNGC | 8 cut(s) | 13, 300, 627, 657, 870, 1246, 1286, 1941 |
| FokI | GGATG | 8 cut(s) | 59, 78, 284, 1560, 1642, 1688, 1811, 2046 |
| FriOI | GRGCYC | 1 cut(s) | 2063 |
| Fsp4HI | GCNGC | 8 cut(s) | 13, 300, 627, 657, 870, 1246, 1286, 1941 |
| FspBI | CTAG | 7 cut(s) | 351, 362, 630, 1070, 1586, 1688, 2088 |
| GlaI | GCGC | 1 cut(s) | 1309 |
| GluI | GCNGC | 8 cut(s) | 13, 300, 627, 657, 870, 1246, 1286, 1941 |
| GsaI | CCCAGC | 1 cut(s) | 876 |
| GsuI | CTGGAG | 1 cut(s) | 502 |
| HaeII | RGCGCY | 1 cut(s) | 1311 |
| HaeIII | GGCC | 2 cut(s) | 1245, 1388 |
| HapII | CCGG | 1 cut(s) | 623 |
| HgaI | GACGC | 1 cut(s) | 791 |
| HhaI | GCGC | 1 cut(s) | 1310 |
| Hin1I | GRCGYC | 1 cut(s) | 783 |
| Hin6I | GCGC | 1 cut(s) | 1308 |
| HinP1I | GCGC | 1 cut(s) | 1308 |
| HincII | GTYRAC | 3 cut(s) | 441, 1564, 1582 |
| HindII | GTYRAC | 3 cut(s) | 441, 1564, 1582 |
| HindIII | AAGCTT | 2 cut(s) | 1032, 1275 |
| HinfI | GANTC | 6 cut(s) | 182, 515, 539, 706, 1531, 1590 |
| HpaI | GTTAAC | 1 cut(s) | 1564 |
| HpaII | CCGG | 1 cut(s) | 623 |
| HphI | GGTGA | 5 cut(s) | 16, 488, 566, 860, 1667 |
| Hpy166II | GTNNAC | 6 cut(s) | 157, 441, 781, 1564, 1582, 1789 |
| Hpy188I | TCNGA | 7 cut(s) | 492, 1422, 1629, 2070, 2075, 2084, 2104 |
| Hpy188III | TCNNGA | 4 cut(s) | 362, 710, 719, 1745 |
| Hpy8I | GTNNAC | 6 cut(s) | 157, 441, 781, 1564, 1582, 1789 |
| HpyAV | CCTTC | 7 cut(s) | 83, 473, 659, 763, 1112, 1333, 2111 |
| HpyCH4III | ACNGT | 6 cut(s) | 497, 1115, 1393, 1402, 1871, 1968 |
| HpyCH4IV | ACGT | 2 cut(s) | 294, 1645 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 18, 77 |
| HpyF3I | CTNAG | 5 cut(s) | 72, 213, 251, 570, 608 |
| HpySE526I | ACGT | 2 cut(s) | 294, 1645 |
| Hsp92I | GRCGYC | 1 cut(s) | 783 |
| HspAI | GCGC | 1 cut(s) | 1308 |
| KspAI | GTTAAC | 1 cut(s) | 1564 |
| LguI | GCTCTTC | 4 cut(s) | 651, 756, 864, 969 |
| LmnI | GCTCC | 2 cut(s) | 1121, 1334 |
| Lsp1109I | GCAGC | 5 cut(s) | 24, 311, 638, 881, 1927 |
| LweI | GCATC | 2 cut(s) | 37, 415 |
| MaeI | CTAG | 7 cut(s) | 351, 362, 630, 1070, 1586, 1688, 2088 |
| MaeII | ACGT | 2 cut(s) | 294, 1645 |
| MaeIII | GTNAC | 2 cut(s) | 554, 1261 |
| MbiI | CCGCTC | 2 cut(s) | 374, 749 |
| MfeI | CAATTG | 2 cut(s) | 952, 1830 |
| MflI | RGATCY | 5 cut(s) | 358, 635, 715, 1491, 1741 |
| MhlI | GDGCHC | 2 cut(s) | 73, 2063 |
| MlsI | TGGCCA | 1 cut(s) | 1388 |
| MluNI | TGGCCA | 1 cut(s) | 1388 |
| MlyI | GAGTC | 2 cut(s) | 509, 700 |
| MmeI | TCCRAC | 2 cut(s) | 525, 972 |
| Mox20I | TGGCCA | 1 cut(s) | 1388 |
| MscI | TGGCCA | 1 cut(s) | 1388 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1098 |
| Msp20I | TGGCCA | 1 cut(s) | 1388 |
| MspA1I | CMGCKG | 2 cut(s) | 449, 872 |
| MspCI | CTTAAG | 1 cut(s) | 1456 |
| MspI | CCGG | 1 cut(s) | 623 |
| MspR9I | CCNGG | 1 cut(s) | 304 |
| MunI | CAATTG | 2 cut(s) | 952, 1830 |
| Mva1269I | GAATGC | 2 cut(s) | 1451, 1470 |
| MvaI | CCWGG | 1 cut(s) | 304 |
| MvnI | CGCG | 1 cut(s) | 659 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 18, 77 |
| NcoI | CCATGG | 1 cut(s) | 1146 |
| NlaIV | GGNNCC | 1 cut(s) | 801 |
| NmuCI | GTSAC | 1 cut(s) | 554 |
| NspI | RCATGY | 5 cut(s) | 317, 674, 992, 1225, 1940 |
| NspV | TTCGAA | 1 cut(s) | 1722 |
| OliI | CACNNNNGTG | 1 cut(s) | 1098 |
| PciSI | GCTCTTC | 4 cut(s) | 651, 756, 864, 969 |
| PctI | GAATGC | 2 cut(s) | 1451, 1470 |
| PfeI | GAWTC | 4 cut(s) | 182, 539, 1531, 1590 |
| PkrI | GCNGC | 8 cut(s) | 14, 301, 628, 658, 871, 1247, 1287, 1942 |
| PleI | GAGTC | 2 cut(s) | 509, 700 |
| PpsI | GAGTC | 2 cut(s) | 509, 700 |
| Psp6I | CCWGG | 1 cut(s) | 302 |
| PspFI | CCCAGC | 1 cut(s) | 872 |
| PspGI | CCWGG | 1 cut(s) | 302 |
| PspN4I | GGNNCC | 1 cut(s) | 801 |
| PspPI | GGNCC | 1 cut(s) | 1243 |
| PstI | CTGCAG | 1 cut(s) | 1945 |
| PsuI | RGATCY | 5 cut(s) | 358, 635, 715, 1491, 1741 |
| PvuII | CAGCTG | 2 cut(s) | 449, 872 |
| RsaI | GTAC | 5 cut(s) | 249, 606, 765, 1112, 1404 |
| RsaNI | GTAC | 5 cut(s) | 248, 605, 764, 1111, 1403 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1098 |
| SapI | GCTCTTC | 4 cut(s) | 651, 756, 864, 969 |
| SatI | GCNGC | 8 cut(s) | 13, 300, 627, 657, 870, 1246, 1286, 1941 |
| Sau96I | GGNCC | 1 cut(s) | 1243 |
| SchI | GAGTC | 2 cut(s) | 509, 700 |
| ScrFI | CCNGG | 1 cut(s) | 304 |
| SduI | GDGCHC | 2 cut(s) | 73, 2063 |
| SfaNI | GCATC | 2 cut(s) | 37, 415 |
| SfcI | CTRYAG | 3 cut(s) | 639, 1728, 1941 |
| SfuI | TTCGAA | 1 cut(s) | 1722 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1098 |
| SmlI | CTYRAG | 3 cut(s) | 708, 1456, 1523 |
| SmoI | CTYRAG | 3 cut(s) | 708, 1456, 1523 |
| SpeI | ACTAGT | 1 cut(s) | 1687 |
| SsiI | CCGC | 6 cut(s) | 276, 374, 657, 747, 1246, 1286 |
| SspMI | CTAG | 7 cut(s) | 351, 362, 630, 1070, 1586, 1688, 2088 |
| StyD4I | CCNGG | 1 cut(s) | 302 |
| StyI | CCWWGG | 4 cut(s) | 42, 1146, 1379, 1585 |
| TaaI | ACNGT | 6 cut(s) | 497, 1115, 1393, 1402, 1871, 1968 |
| TaiI | ACGT | 2 cut(s) | 297, 1648 |
| TaqI | TCGA | 4 cut(s) | 420, 513, 1131, 1722 |
| TatI | WGTACW | 5 cut(s) | 247, 604, 763, 1110, 1402 |
| TauI | GCSGC | 3 cut(s) | 659, 1248, 1288 |
| TfiI | GAWTC | 4 cut(s) | 182, 539, 1531, 1590 |
| TscAI | CASTG | 2 cut(s) | 273, 1120 |
| TseFI | GTSAC | 1 cut(s) | 554 |
| TseI | GCWGC | 5 cut(s) | 12, 299, 626, 869, 1940 |
| Tsp45I | GTSAC | 1 cut(s) | 554 |
| TspDTI | ATGAA | 9 cut(s) | 468, 540, 851, 1512, 1620, 1625, 1721, 1811, 1815 |
| TspGWI | ACGGA | 3 cut(s) | 101, 1249, 1344 |
| TspRI | CASTG | 2 cut(s) | 273, 1120 |
| Vha464I | CTTAAG | 1 cut(s) | 1456 |
| XapI | RAATTY | 9 cut(s) | 134, 161, 262, 1232, 1343, 1475, 1637, 1851, 1948 |
| XbaI | TCTAGA | 1 cut(s) | 361 |
| XceI | RCATGY | 5 cut(s) | 317, 674, 992, 1225, 1940 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1169, 1296 |
| XmaJI | CCTAGG | 1 cut(s) | 1585 |
| XspI | CTAG | 7 cut(s) | 351, 362, 630, 1070, 1586, 1688, 2088 |