protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 46 - 152 | 1.9e-18 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 207, 599, 632 |
| AcsI | RAATTY | 2 cut(s) | 18, 58 |
| AcvI | CACGTG | 1 cut(s) | 71 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AgeI | ACCGGT | 1 cut(s) | 224 |
| AgsI | TTSAA | 2 cut(s) | 57, 259 |
| AjiI | CACGTC | 1 cut(s) | 336 |
| AjnI | CCWGG | 1 cut(s) | 202 |
| AluBI | AGCT | 3 cut(s) | 140, 200, 253 |
| AluI | AGCT | 3 cut(s) | 140, 200, 253 |
| Alw21I | GWGCWC | 1 cut(s) | 163 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 203 |
| AoxI | GGCC | 1 cut(s) | 391 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| ApoI | RAATTY | 2 cut(s) | 18, 58 |
| AsiGI | ACCGGT | 1 cut(s) | 224 |
| AspS9I | GGNCC | 1 cut(s) | 575 |
| AsuHPI | GGTGA | 1 cut(s) | 22 |
| AvaII | GGWCC | 1 cut(s) | 575 |
| BaeGI | GKGCMC | 2 cut(s) | 448, 638 |
| BbrPI | CACGTG | 1 cut(s) | 71 |
| BbsI | GAAGAC | 2 cut(s) | 221, 357 |
| Bbv12I | GWGCWC | 1 cut(s) | 163 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 1 cut(s) | 458 |
| BciT130I | CCWGG | 1 cut(s) | 204 |
| BclI | TGATCA | 1 cut(s) | 429 |
| BfmI | CTRYAG | 2 cut(s) | 153, 186 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| Bme1390I | CCNGG | 1 cut(s) | 204 |
| Bme18I | GGWCC | 1 cut(s) | 575 |
| BmgBI | CACGTC | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 1 cut(s) | 575 |
| BmiI | GGNNCC | 1 cut(s) | 368 |
| BmrFI | CCNGG | 1 cut(s) | 204 |
| BmsI | GCATC | 1 cut(s) | 554 |
| BpiI | GAAGAC | 2 cut(s) | 221, 357 |
| BsaAI | YACGTR | 1 cut(s) | 71 |
| BsaWI | WCCGGW | 2 cut(s) | 224, 487 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bse118I | RCCGGY | 1 cut(s) | 224 |
| BseBI | CCWGG | 1 cut(s) | 204 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseSI | GKGCMC | 2 cut(s) | 448, 638 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| BshFI | GGCC | 1 cut(s) | 393 |
| BshTI | ACCGGT | 1 cut(s) | 224 |
| BsiHKAI | GWGCWC | 1 cut(s) | 163 |
| BsiSI | CCGG | 2 cut(s) | 225, 488 |
| BslFI | GGGAC | 1 cut(s) | 339 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmFI | GGGAC | 1 cut(s) | 339 |
| BsmI | GAATGC | 1 cut(s) | 191 |
| BsnI | GGCC | 1 cut(s) | 393 |
| Bsp1286I | GDGCHC | 3 cut(s) | 163, 448, 638 |
| Bsp143I | GATC | 2 cut(s) | 429, 615 |
| BspACI | CCGC | 3 cut(s) | 207, 599, 632 |
| BspANI | GGCC | 1 cut(s) | 393 |
| BspCNI | CTCAG | 1 cut(s) | 287 |
| BspLI | GGNNCC | 1 cut(s) | 368 |
| BsrFI | RCCGGY | 1 cut(s) | 224 |
| BssAI | RCCGGY | 1 cut(s) | 224 |
| BssMI | GATC | 2 cut(s) | 429, 615 |
| Bst2UI | CCWGG | 1 cut(s) | 204 |
| Bst4CI | ACNGT | 2 cut(s) | 154, 508 |
| Bst6I | CTCTTC | 1 cut(s) | 8 |
| BstBAI | YACGTR | 1 cut(s) | 71 |
| BstC8I | GCNNGC | 2 cut(s) | 601, 634 |
| BstDEI | CTNAG | 1 cut(s) | 274 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstKTI | GATC | 2 cut(s) | 432, 618 |
| BstMBI | GATC | 2 cut(s) | 429, 615 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 119, 197, 250 |
| BstNI | CCWGG | 1 cut(s) | 204 |
| BstSCI | CCNGG | 1 cut(s) | 202 |
| BstSFI | CTRYAG | 2 cut(s) | 153, 186 |
| BstSLI | GKGCMC | 2 cut(s) | 448, 638 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstV2I | GAAGAC | 2 cut(s) | 221, 357 |
| BsuRI | GGCC | 1 cut(s) | 393 |
| BtrI | CACGTC | 1 cut(s) | 336 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| Cac8I | GCNNGC | 2 cut(s) | 601, 634 |
| CaiI | CAGNNNCTG | 1 cut(s) | 203 |
| Cfr10I | RCCGGY | 1 cut(s) | 224 |
| Cfr13I | GGNCC | 1 cut(s) | 575 |
| CspAI | ACCGGT | 1 cut(s) | 224 |
| CviAII | CATG | 3 cut(s) | 38, 124, 424 |
| CviJI | RGCY | 5 cut(s) | 122, 140, 200, 253, 393 |
| CviKI_1 | RGCY | 5 cut(s) | 122, 140, 200, 253, 393 |
| DdeI | CTNAG | 1 cut(s) | 274 |
| DpnI | GATC | 2 cut(s) | 431, 617 |
| DpnII | GATC | 2 cut(s) | 429, 615 |
| Eam1104I | CTCTTC | 1 cut(s) | 8 |
| EarI | CTCTTC | 1 cut(s) | 8 |
| EciI | GGCGGA | 1 cut(s) | 222 |
| Eco147I | AGGCCT | 1 cut(s) | 393 |
| Eco47I | GGWCC | 1 cut(s) | 575 |
| Eco72I | CACGTG | 1 cut(s) | 71 |
| EcoRI | GAATTC | 1 cut(s) | 18 |
| EcoRII | CCWGG | 1 cut(s) | 202 |
| EcoT22I | ATGCAT | 2 cut(s) | 39, 246 |
| FaeI | CATG | 3 cut(s) | 41, 127, 427 |
| FaqI | GGGAC | 1 cut(s) | 339 |
| FatI | CATG | 3 cut(s) | 37, 123, 423 |
| FauI | CCCGC | 2 cut(s) | 592, 625 |
| FbaI | TGATCA | 1 cut(s) | 429 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| GluI | GCNGC | 1 cut(s) | 138 |
| HaeIII | GGCC | 1 cut(s) | 393 |
| HapII | CCGG | 2 cut(s) | 225, 488 |
| Hin1II | CATG | 3 cut(s) | 41, 127, 427 |
| HincII | GTYRAC | 1 cut(s) | 339 |
| HindII | GTYRAC | 1 cut(s) | 339 |
| HinfI | GANTC | 1 cut(s) | 88 |
| HpaII | CCGG | 2 cut(s) | 225, 488 |
| HphI | GGTGA | 1 cut(s) | 22 |
| Hpy166II | GTNNAC | 2 cut(s) | 74, 339 |
| Hpy188I | TCNGA | 3 cut(s) | 31, 165, 277 |
| Hpy188III | TCNNGA | 1 cut(s) | 259 |
| Hpy8I | GTNNAC | 2 cut(s) | 74, 339 |
| Hpy99I | CGWCG | 1 cut(s) | 518 |
| HpyAV | CCTTC | 2 cut(s) | 36, 588 |
| HpyCH4III | ACNGT | 2 cut(s) | 154, 508 |
| HpyCH4IV | ACGT | 4 cut(s) | 70, 317, 335, 434 |
| HpyCH4V | TGCA | 9 cut(s) | 4, 37, 137, 244, 302, 347, 527, 561, 567 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 119, 197, 250 |
| HpyF3I | CTNAG | 1 cut(s) | 274 |
| HpySE526I | ACGT | 4 cut(s) | 70, 317, 335, 434 |
| Hsp92II | CATG | 3 cut(s) | 41, 127, 427 |
| Ksp22I | TGATCA | 1 cut(s) | 429 |
| Kzo9I | GATC | 2 cut(s) | 429, 615 |
| LmnI | GCTCC | 1 cut(s) | 205 |
| LpnPI | CCDG | 4 cut(s) | 189, 216, 238, 501 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| LweI | GCATC | 1 cut(s) | 554 |
| MaeII | ACGT | 4 cut(s) | 70, 317, 335, 434 |
| MaeIII | GTNAC | 2 cut(s) | 169, 218 |
| MalI | GATC | 2 cut(s) | 431, 617 |
| MboI | GATC | 2 cut(s) | 429, 615 |
| MboII | GAAGA | 5 cut(s) | 25, 135, 221, 288, 362 |
| MhlI | GDGCHC | 3 cut(s) | 163, 448, 638 |
| MluCI | AATT | 7 cut(s) | 18, 58, 98, 312, 380, 483, 528 |
| MlyI | GAGTC | 1 cut(s) | 97 |
| MnlI | CCTC | 1 cut(s) | 554 |
| Mph1103I | ATGCAT | 2 cut(s) | 39, 246 |
| MseI | TTAA | 1 cut(s) | 101 |
| MslI | CAYNNNNRTG | 1 cut(s) | 42 |
| MspI | CCGG | 2 cut(s) | 225, 488 |
| MspR9I | CCNGG | 1 cut(s) | 204 |
| Mva1269I | GAATGC | 1 cut(s) | 191 |
| MvaI | CCWGG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 119, 197, 250 |
| NdeII | GATC | 2 cut(s) | 429, 615 |
| NlaIII | CATG | 3 cut(s) | 41, 127, 427 |
| NlaIV | GGNNCC | 1 cut(s) | 368 |
| NsiI | ATGCAT | 2 cut(s) | 39, 246 |
| PceI | AGGCCT | 1 cut(s) | 393 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 314 |
| PctI | GAATGC | 1 cut(s) | 191 |
| PinAI | ACCGGT | 1 cut(s) | 224 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| PleI | GAGTC | 1 cut(s) | 96 |
| PmaCI | CACGTG | 1 cut(s) | 71 |
| PmlI | CACGTG | 1 cut(s) | 71 |
| PpsI | GAGTC | 1 cut(s) | 96 |
| Ppu21I | YACGTR | 1 cut(s) | 71 |
| Psp6I | CCWGG | 1 cut(s) | 202 |
| PspCI | CACGTG | 1 cut(s) | 71 |
| PspGI | CCWGG | 1 cut(s) | 202 |
| PspN4I | GGNNCC | 1 cut(s) | 368 |
| PspPI | GGNCC | 1 cut(s) | 575 |
| PstNI | CAGNNNCTG | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 1 cut(s) | 42 |
| SaqAI | TTAA | 1 cut(s) | 101 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 2 cut(s) | 429, 615 |
| Sau96I | GGNCC | 1 cut(s) | 575 |
| SchI | GAGTC | 1 cut(s) | 97 |
| ScrFI | CCNGG | 1 cut(s) | 204 |
| SduI | GDGCHC | 3 cut(s) | 163, 448, 638 |
| SfaNI | GCATC | 1 cut(s) | 554 |
| SfcI | CTRYAG | 2 cut(s) | 153, 186 |
| SinI | GGWCC | 1 cut(s) | 575 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 42 |
| Sse9I | AATT | 7 cut(s) | 18, 58, 98, 312, 380, 483, 528 |
| SseBI | AGGCCT | 1 cut(s) | 393 |
| SsiI | CCGC | 3 cut(s) | 207, 599, 632 |
| StuI | AGGCCT | 1 cut(s) | 393 |
| StyD4I | CCNGG | 1 cut(s) | 202 |
| TaaI | ACNGT | 2 cut(s) | 154, 508 |
| TaiI | ACGT | 4 cut(s) | 73, 320, 338, 437 |
| TaqI | TCGA | 2 cut(s) | 581, 614 |
| TasI | AATT | 7 cut(s) | 18, 58, 98, 312, 380, 483, 528 |
| Tru1I | TTAA | 1 cut(s) | 101 |
| Tru9I | TTAA | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 137 |
| TspDTI | ATGAA | 3 cut(s) | 54, 123, 140 |
| VpaK11BI | GGWCC | 1 cut(s) | 575 |
| XapI | RAATTY | 2 cut(s) | 18, 58 |
| Zsp2I | ATGCAT | 2 cut(s) | 39, 246 |