protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 16 - 42 | 1.7e-08 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 29 - 102 | 8e-10 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 167 - 241 | 1.6e-11 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 209 - 277 | 1.3e-10 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 249 - 313 | 1.4e-07 | Ankyrin repeats (3 copies) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 724 |
| AccBSI | CCGCTC | 1 cut(s) | 674 |
| AciI | CCGC | 4 cut(s) | 219, 253, 581, 672 |
| AclWI | GGATC | 1 cut(s) | 568 |
| AcsI | RAATTY | 2 cut(s) | 210, 1157 |
| AcuI | CTGAAG | 1 cut(s) | 123 |
| AfaI | GTAC | 4 cut(s) | 531, 670, 690, 1037 |
| AgsI | TTSAA | 5 cut(s) | 30, 86, 161, 295, 907 |
| AjnI | CCWGG | 1 cut(s) | 269 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 419, 451 |
| AleI | CACNNNNGTG | 1 cut(s) | 1023 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 275, 307 |
| AluBI | AGCT | 7 cut(s) | 395, 447, 554, 569, 797, 959, 1049 |
| AluI | AGCT | 7 cut(s) | 395, 447, 554, 569, 797, 959, 1049 |
| Alw26I | GTCTC | 2 cut(s) | 730, 1023 |
| AlwI | GGATC | 1 cut(s) | 568 |
| Ama87I | CYCGRG | 1 cut(s) | 78 |
| AoxI | GGCC | 1 cut(s) | 267 |
| ApeKI | GCWGC | 2 cut(s) | 551, 794 |
| ApoI | RAATTY | 2 cut(s) | 210, 1157 |
| AseI | ATTAAT | 1 cut(s) | 243 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 290 |
| AsuHPI | GGTGA | 3 cut(s) | 491, 595, 785 |
| AvaI | CYCGRG | 1 cut(s) | 78 |
| BanI | GGYRCC | 1 cut(s) | 724 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| BbvI | GCAGC | 2 cut(s) | 563, 806 |
| BccI | CCATC | 2 cut(s) | 259, 968 |
| BceAI | ACGGC | 2 cut(s) | 712, 1005 |
| BciT130I | CCWGG | 1 cut(s) | 271 |
| BcoDI | GTCTC | 2 cut(s) | 730, 1023 |
| BfaI | CTAG | 1 cut(s) | 555 |
| BfmI | CTRYAG | 1 cut(s) | 564 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BglII | AGATCT | 2 cut(s) | 106, 640 |
| BisI | GCNGC | 2 cut(s) | 552, 795 |
| BlsI | GCNGC | 2 cut(s) | 553, 796 |
| Bme1390I | CCNGG | 1 cut(s) | 271 |
| BmeT110I | CYCGRG | 1 cut(s) | 78 |
| BmiI | GGNNCC | 1 cut(s) | 726 |
| BmrFI | CCNGG | 1 cut(s) | 271 |
| BmrI | ACTGGG | 1 cut(s) | 493 |
| BmsI | GCATC | 1 cut(s) | 361 |
| BmuI | ACTGGG | 1 cut(s) | 493 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| BpmI | CTGGAG | 1 cut(s) | 427 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| BpuEI | CTTGAG | 1 cut(s) | 618 |
| Bsa29I | ATCGAT | 1 cut(s) | 366 |
| BsaJI | CCNNGG | 3 cut(s) | 189, 270, 1071 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 275, 305, 425, 455 |
| Bse1I | ACTGG | 2 cut(s) | 488, 1130 |
| Bse3DI | GCAATG | 1 cut(s) | 576 |
| BseBI | CCWGG | 1 cut(s) | 271 |
| BseCI | ATCGAT | 1 cut(s) | 366 |
| BseDI | CCNNGG | 3 cut(s) | 189, 270, 1071 |
| BseGI | GGATG | 1 cut(s) | 121 |
| BseMI | GCAATG | 1 cut(s) | 576 |
| BseNI | ACTGG | 2 cut(s) | 488, 1130 |
| BseXI | GCAGC | 2 cut(s) | 563, 806 |
| BseYI | CCCAGC | 1 cut(s) | 797 |
| BshFI | GGCC | 1 cut(s) | 269 |
| BshNI | GGYRCC | 1 cut(s) | 724 |
| BshVI | ATCGAT | 1 cut(s) | 366 |
| BsiHKCI | CYCGRG | 1 cut(s) | 78 |
| BslFI | GGGAC | 1 cut(s) | 235 |
| BsmAI | GTCTC | 2 cut(s) | 730, 1023 |
| BsmBI | CGTCTC | 1 cut(s) | 1023 |
| BsmFI | GGGAC | 1 cut(s) | 235 |
| BsmI | GAATGC | 1 cut(s) | 190 |
| BsnI | GGCC | 1 cut(s) | 269 |
| BsoBI | CYCGRG | 1 cut(s) | 78 |
| Bsp143I | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| Bsp19I | CCATGG | 1 cut(s) | 1071 |
| BspACI | CCGC | 4 cut(s) | 219, 253, 581, 672 |
| BspANI | GGCC | 1 cut(s) | 269 |
| BspDI | ATCGAT | 1 cut(s) | 366 |
| BspHI | TCATGA | 1 cut(s) | 840 |
| BspLI | GGNNCC | 1 cut(s) | 726 |
| BspPI | GGATC | 1 cut(s) | 568 |
| BspQI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| BspT107I | GGYRCC | 1 cut(s) | 724 |
| BsrBI | CCGCTC | 1 cut(s) | 674 |
| BsrDI | GCAATG | 1 cut(s) | 576 |
| BsrI | ACTGG | 2 cut(s) | 488, 1130 |
| BssECI | CCNNGG | 3 cut(s) | 189, 270, 1071 |
| BssMI | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| BssT1I | CCWWGG | 2 cut(s) | 189, 1071 |
| Bst2UI | CCWGG | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 4 cut(s) | 16, 291, 422, 1040 |
| Bst6I | CTCTTC | 6 cut(s) | 141, 330, 576, 681, 789, 894 |
| BstC8I | GCNNGC | 2 cut(s) | 7, 1144 |
| BstDEI | CTNAG | 2 cut(s) | 495, 533 |
| BstDSI | CCRYGG | 1 cut(s) | 1071 |
| BstF5I | GGATG | 1 cut(s) | 121 |
| BstKTI | GATC | 4 cut(s) | 109, 563, 643, 1056 |
| BstMAI | GTCTC | 2 cut(s) | 730, 1023 |
| BstMBI | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 200, 266 |
| BstNI | CCWGG | 1 cut(s) | 271 |
| BstNSI | RCATGY | 4 cut(s) | 203, 599, 917, 1150 |
| BstSCI | CCNGG | 1 cut(s) | 269 |
| BstSFI | CTRYAG | 1 cut(s) | 564 |
| BstV1I | GCAGC | 2 cut(s) | 563, 806 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 3 cut(s) | 106, 560, 640 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BstYI | RGATCY | 3 cut(s) | 106, 560, 640 |
| Bsu15I | ATCGAT | 1 cut(s) | 366 |
| BsuRI | GGCC | 1 cut(s) | 269 |
| BsuTUI | ATCGAT | 1 cut(s) | 366 |
| BtgI | CCRYGG | 1 cut(s) | 1071 |
| BtsCI | GGATG | 1 cut(s) | 121 |
| BtsIMutI | CAGTG | 1 cut(s) | 1045 |
| Cac8I | GCNNGC | 2 cut(s) | 7, 1144 |
| CciI | TCATGA | 1 cut(s) | 840 |
| ClaI | ATCGAT | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 716 |
| Csp6I | GTAC | 4 cut(s) | 530, 669, 689, 1036 |
| CviAII | CATG | 9 cut(s) | 127, 200, 300, 596, 788, 841, 914, 1072, 1147 |
| CviQI | GTAC | 4 cut(s) | 530, 669, 689, 1036 |
| DdeI | CTNAG | 2 cut(s) | 495, 533 |
| DpnI | GATC | 4 cut(s) | 108, 562, 642, 1055 |
| DpnII | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| Eam1104I | CTCTTC | 6 cut(s) | 141, 330, 576, 681, 789, 894 |
| EarI | CTCTTC | 6 cut(s) | 141, 330, 576, 681, 789, 894 |
| Eco130I | CCWWGG | 2 cut(s) | 189, 1071 |
| Eco32I | GATATC | 1 cut(s) | 350 |
| Eco57I | CTGAAG | 1 cut(s) | 123 |
| Eco88I | CYCGRG | 1 cut(s) | 78 |
| EcoRII | CCWGG | 1 cut(s) | 269 |
| EcoRV | GATATC | 1 cut(s) | 350 |
| EcoT14I | CCWWGG | 2 cut(s) | 189, 1071 |
| ErhI | CCWWGG | 2 cut(s) | 189, 1071 |
| Esp3I | CGTCTC | 1 cut(s) | 1023 |
| FaeI | CATG | 9 cut(s) | 130, 203, 303, 599, 791, 844, 917, 1075, 1150 |
| FaqI | GGGAC | 1 cut(s) | 235 |
| FatI | CATG | 9 cut(s) | 126, 199, 299, 595, 787, 840, 913, 1071, 1146 |
| FauI | CCCGC | 2 cut(s) | 212, 260 |
| Fnu4HI | GCNGC | 2 cut(s) | 552, 795 |
| FokI | GGATG | 1 cut(s) | 128 |
| Fsp4HI | GCNGC | 2 cut(s) | 552, 795 |
| FspBI | CTAG | 1 cut(s) | 555 |
| GluI | GCNGC | 2 cut(s) | 552, 795 |
| GsaI | CCCAGC | 1 cut(s) | 801 |
| GsuI | CTGGAG | 1 cut(s) | 427 |
| HaeIII | GGCC | 1 cut(s) | 269 |
| HgaI | GACGC | 1 cut(s) | 716 |
| Hin1II | CATG | 9 cut(s) | 130, 203, 303, 599, 791, 844, 917, 1075, 1150 |
| HincII | GTYRAC | 2 cut(s) | 124, 387 |
| HindII | GTYRAC | 2 cut(s) | 124, 387 |
| HindIII | AAGCTT | 1 cut(s) | 957 |
| HinfI | GANTC | 4 cut(s) | 223, 440, 464, 631 |
| HphI | GGTGA | 3 cut(s) | 491, 595, 785 |
| Hpy166II | GTNNAC | 3 cut(s) | 124, 387, 706 |
| Hpy188I | TCNGA | 1 cut(s) | 417 |
| Hpy188III | TCNNGA | 5 cut(s) | 137, 635, 644, 841, 904 |
| Hpy8I | GTNNAC | 3 cut(s) | 124, 387, 706 |
| HpyAV | CCTTC | 4 cut(s) | 398, 584, 688, 1037 |
| HpyCH4III | ACNGT | 4 cut(s) | 16, 291, 422, 1040 |
| HpyCH4IV | ACGT | 1 cut(s) | 313 |
| HpyCH4V | TGCA | 6 cut(s) | 203, 601, 814, 919, 1079, 1146 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 200, 266 |
| HpyF3I | CTNAG | 2 cut(s) | 495, 533 |
| HpySE526I | ACGT | 1 cut(s) | 313 |
| Hsp92II | CATG | 9 cut(s) | 130, 203, 303, 599, 791, 844, 917, 1075, 1150 |
| Kzo9I | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| LguI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| LmnI | GCTCC | 1 cut(s) | 1046 |
| Lsp1109I | GCAGC | 2 cut(s) | 563, 806 |
| LweI | GCATC | 1 cut(s) | 361 |
| MaeI | CTAG | 1 cut(s) | 555 |
| MaeII | ACGT | 1 cut(s) | 313 |
| MaeIII | GTNAC | 2 cut(s) | 302, 479 |
| MalI | GATC | 4 cut(s) | 108, 562, 642, 1055 |
| MbiI | CCGCTC | 1 cut(s) | 674 |
| MboI | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| MfeI | CAATTG | 2 cut(s) | 30, 877 |
| MflI | RGATCY | 3 cut(s) | 106, 560, 640 |
| MluCI | AATT | 9 cut(s) | 25, 30, 204, 210, 519, 766, 861, 877, 1157 |
| MlyI | GAGTC | 3 cut(s) | 217, 434, 625 |
| MmeI | TCCRAC | 2 cut(s) | 450, 897 |
| MroXI | GAANNNNTTC | 1 cut(s) | 290 |
| MseI | TTAA | 5 cut(s) | 48, 207, 243, 1065, 1154 |
| MslI | CAYNNNNRTG | 2 cut(s) | 581, 1023 |
| MspA1I | CMGCKG | 2 cut(s) | 395, 797 |
| MspR9I | CCNGG | 1 cut(s) | 271 |
| MunI | CAATTG | 2 cut(s) | 30, 877 |
| Mva1269I | GAATGC | 1 cut(s) | 190 |
| MvaI | CCWGG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 200, 266 |
| NcoI | CCATGG | 1 cut(s) | 1071 |
| NdeII | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| NlaIII | CATG | 9 cut(s) | 130, 203, 303, 599, 791, 844, 917, 1075, 1150 |
| NlaIV | GGNNCC | 1 cut(s) | 726 |
| NmuCI | GTSAC | 2 cut(s) | 302, 479 |
| NspI | RCATGY | 4 cut(s) | 203, 599, 917, 1150 |
| OliI | CACNNNNGTG | 1 cut(s) | 1023 |
| PagI | TCATGA | 1 cut(s) | 840 |
| PciSI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| PctI | GAATGC | 1 cut(s) | 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 290 |
| PfeI | GAWTC | 1 cut(s) | 464 |
| PkrI | GCNGC | 2 cut(s) | 553, 796 |
| PleI | GAGTC | 3 cut(s) | 217, 434, 625 |
| PpsI | GAGTC | 3 cut(s) | 217, 434, 625 |
| PshBI | ATTAAT | 1 cut(s) | 243 |
| Psp6I | CCWGG | 1 cut(s) | 269 |
| PspFI | CCCAGC | 1 cut(s) | 797 |
| PspGI | CCWGG | 1 cut(s) | 269 |
| PspN4I | GGNNCC | 1 cut(s) | 726 |
| PsuI | RGATCY | 3 cut(s) | 106, 560, 640 |
| PvuII | CAGCTG | 2 cut(s) | 395, 797 |
| RsaI | GTAC | 4 cut(s) | 531, 670, 690, 1037 |
| RsaNI | GTAC | 4 cut(s) | 530, 669, 689, 1036 |
| RseI | CAYNNNNRTG | 2 cut(s) | 581, 1023 |
| SapI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| SaqAI | TTAA | 5 cut(s) | 48, 207, 243, 1065, 1154 |
| SatI | GCNGC | 2 cut(s) | 552, 795 |
| Sau3AI | GATC | 4 cut(s) | 106, 560, 640, 1053 |
| SchI | GAGTC | 3 cut(s) | 217, 434, 625 |
| ScrFI | CCNGG | 1 cut(s) | 271 |
| SfaNI | GCATC | 1 cut(s) | 361 |
| SfcI | CTRYAG | 1 cut(s) | 564 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 581, 1023 |
| SmlI | CTYRAG | 1 cut(s) | 633 |
| SmoI | CTYRAG | 1 cut(s) | 633 |
| Sse9I | AATT | 9 cut(s) | 25, 30, 204, 210, 519, 766, 861, 877, 1157 |
| SsiI | CCGC | 4 cut(s) | 219, 253, 581, 672 |
| SspMI | CTAG | 1 cut(s) | 555 |
| StyD4I | CCNGG | 1 cut(s) | 269 |
| StyI | CCWWGG | 2 cut(s) | 189, 1071 |
| TaaI | ACNGT | 4 cut(s) | 16, 291, 422, 1040 |
| TaiI | ACGT | 1 cut(s) | 316 |
| TaqI | TCGA | 4 cut(s) | 226, 366, 438, 1056 |
| TasI | AATT | 9 cut(s) | 25, 30, 204, 210, 519, 766, 861, 877, 1157 |
| TatI | WGTACW | 3 cut(s) | 529, 688, 1035 |
| TfiI | GAWTC | 1 cut(s) | 464 |
| Tru1I | TTAA | 5 cut(s) | 48, 207, 243, 1065, 1154 |
| Tru9I | TTAA | 5 cut(s) | 48, 207, 243, 1065, 1154 |
| TscAI | CASTG | 1 cut(s) | 1045 |
| TseFI | GTSAC | 2 cut(s) | 302, 479 |
| TseI | GCWGC | 2 cut(s) | 551, 794 |
| Tsp45I | GTSAC | 2 cut(s) | 302, 479 |
| TspDTI | ATGAA | 7 cut(s) | 143, 261, 414, 465, 776, 829, 983 |
| TspRI | CASTG | 1 cut(s) | 1045 |
| VspI | ATTAAT | 1 cut(s) | 243 |
| XapI | RAATTY | 2 cut(s) | 210, 1157 |
| XceI | RCATGY | 4 cut(s) | 203, 599, 917, 1150 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1094 |
| XmnI | GAANNNNTTC | 1 cut(s) | 290 |
| XspI | CTAG | 1 cut(s) | 555 |