Rh6DG206200

Domain of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000027
Physical Location & Seq
Reverse (-)
36716804 .. 36724214
7411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG206200.1

Sequence Viewer

Length: 2346 bp
ATGGGAAGTACTATGTTTGCTAATACCTCCATCTTCCCTGAATCACTTAACCGTAATAACTATAATCACTGGAGTATGCGGGTCAAAACCTACTTGTTGGCCGAAGGTTTATGGAACGTTATCAAAGAAACCACTAAACCAGAAGATTGTGATTCTGAACCGGAATGGTTCGAGGCTTGGACAATGAAGAATGCGAAAGCTCTGCATGTAATCCAAAACTCGTGCGGGAGTGATATGTTTTCTCTGATAAGTGATATTGACACTGCCAAAACTGCATGGGAGATCTTGGAAAGAGAGTGCAAGGTACTGAAGGCAGACATAGATATAGTTCTGGAAAAGGAAGAGGAAGGAAAATCTGTTCGCAGCGCAATCCAAACCCAACACAAAGAAGACGAGGAAATAAAGGCAAGTGAAGGTGAGAACAATACCAACAACTTCAAACGCTATGAAACTTTCTTCAATCGTGTGAAGAGTGGAAATTGGCCAAAGGCAAAGGAGTATCTTGAAGAAGAAGGACTAGATATCAACGAAGCGGTAAGAGCAAGAGATCCAAGATACCAATACACAGCTCTTTACCTAGCTGCCAAGGAAGGGCATGCAAAGATTGTGAAAGAGTTACTGTCGTTTATGAGAAAAGAAGAGCTGGAAGTGATAAACACTGGTGGTTACACACTTTTAGGCAATGTTGTAAGAAAAGGCTATGGCGGAGCAACAAATGCAGAAGAAGTGGCTAGATGCATAGTTGAAAAGAACGAGAATGTACTCACCATTGGCATTAATCCTCCCCACAGTTGGTTTCCAGTTGTCGAGGCTTGTTCCTGGAACAGATGGAAACTGGCTCGCTATCTCTATTCTGTCACTCCCCATGAAGCTCTATTAACAGAGACCAGGCGTGATGGCCCTCAAATTCTTACCTATTGTTTTAAGCGTATGAAAGGGTTTGATATTGCACGGGACATATTGAAATGTAATCCAATCTTGGCTCTTACTGAAAACTACGATGGAGAGTTTCCTATGTCCGTATTGGCTTGTATGCAGTCTGCAACCTTCAGTGGAAGGCAACTTAAATATTGGCAGCAGTGGATCTATGACAGTATACAAATGAAACCTGTTGATCCTATCCCTCATGAGATATCTATAAATGTTTCAAAACCGGAAGATGATCAAGATGGCAGTCCAACTCGAGACCTAAAAGATGTGTGTGCAAACAACCCCTATGGTGCAAGGTGGACGACCAATTGCTCAGTCATGAACTTACACAGAGGATCCATGAGGGGTGTCGGTAAACTTTTGGGAATCAAATCCATATATGAAATGAAATTGATCCACATGGAAATCCTTGAATTCATACGTTGCATTGAAGGGATAAAATGGGAGAAACTTACAGAAGAGCAATGGAAAATCGTGAAAACATCAATCTTTCGAGCTGTAGAACGAGGAAATGTTCAGTTTGTCACTGAAATATATAATGCAAATCGACAGATTGGAATGATTAGAGCAAAGGATAAGAAAGGAAGGAACATATTTCATGTTGCCATTGAATGCCGCCAAATTAACATTTATAACCTTATATATGGACTGCGTGAAGAAAAGAGAAGCAATTTGGGATGTACTGTAACGAGCTCTAACGAAAATATGCTCCATATGGCGGGGAAATTGTCTCCACTCTCGCAATTCAATCATATTCAAGGTGCATATTTGCAAATGCAGAGAGAGCTGCAATGGTTTAAGGAGGTGGAGAGTATTGTACCGGTTGAAATGCGTGAATCTCTAAATACTTCATATGTGACACCGCGTGAGCTCTTTACCAAAAGTCATGAGAAATTAATGAAGGATGCAGAAGACTCAATTAAAGGGATAGCAACTTCTTGTACAGTTGTAGGTGCTCTCATTGTTACCATCATGTTTGCTGTAGCATTCACTGTTCCTGGTGGAAGCGATAGTAACACAGGTCTTCCCGTTTTCATGGATAAAAAGTTGTTTAAGATTTTTATCATTTCAGATGTTATATCATTAGTGACATCCACGACCTCAGTAATTATATTTTTGGGAATCCTCACGTCACGTTATGCAGAAGATGACTTCCTCACATTTTTGCCTACAAAAATGATGATCGGTCTTTCCACCCTTTTCCTCTCGATTTCTGCTATGATGATTGCATTTTCTTCTGCCCTCACCATTATGACTGGTGATAAGAGAAACTCCAAGACTTTTATTCGAAACCTATTGCTGGCTTTTCTTCCCATCAGCTCATTTATTTGGATGCAGTTTTCCTTTATCGTTGAGATATTCATCTCTACTTATGGACCAGGAATATTTGACAAGAAGATCAAACGCTGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 DUF4219 PGG

Protein Analysis

781

Amino Acids

89.36

Weight (kDa)

7.19

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 16 - 41 6.9e-08 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 29 - 98 1.9e-07 gag-polypeptide of LTR copia-type
PGG PF13962 618 - 727 8.9e-23 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1563
AccI GTMKAC 1 cut(s) 1096
AccII CGCG 1 cut(s) 1795
AciI CCGC 7 cut(s) 79, 225, 533, 705, 1546, 1649, 1793
AclI AACGTT 1 cut(s) 117
AclWI GGATC 6 cut(s) 542, 1091, 1109, 1260, 1273, 1318
AcoI YGGCCR 2 cut(s) 99, 482
AcsI RAATTY 2 cut(s) 906, 1343
AcuI CTGAAG 2 cut(s) 329, 1033
AdeI CACNNNGTG 1 cut(s) 1796
AfaI GTAC 6 cut(s) 10, 306, 762, 1612, 1749, 1873
AfiI CCNNNNNNNGG 4 cut(s) 591, 792, 1648, 2230
AgeI ACCGGT 1 cut(s) 1750
AjiI CACGTC 1 cut(s) 2061
AjnI CCWGG 4 cut(s) 818, 887, 1927, 2308
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
Alw21I GWGCWC 3 cut(s) 1625, 1803, 1888
Alw26I GTCTC 3 cut(s) 878, 1179, 1665
AlwI GGATC 6 cut(s) 542, 1091, 1109, 1260, 1273, 1318
Ama87I CYCGRG 1 cut(s) 1182
AoxI GGCC 3 cut(s) 99, 482, 898
ApeKI GCWGC 4 cut(s) 363, 581, 1075, 1717
ApoI RAATTY 2 cut(s) 906, 1343
AseI ATTAAT 2 cut(s) 777, 1826
AsiGI ACCGGT 1 cut(s) 1750
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 899, 2306
AsuHPI GGTGA 4 cut(s) 428, 757, 2167, 2201
AsuII TTCGAA 1 cut(s) 2218
AvaI CYCGRG 1 cut(s) 1182
AvaII GGWCC 1 cut(s) 2306
BalI TGGCCA 1 cut(s) 484
BamHI GGATCC 1 cut(s) 1265
BanII GRGCYC 2 cut(s) 1625, 1803
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 3 cut(s) 396, 1848, 1946
Bbv12I GWGCWC 3 cut(s) 1625, 1803, 1888
BbvI GCAGC 4 cut(s) 375, 568, 1087, 1704
BccI CCATC 7 cut(s) 38, 822, 890, 995, 1163, 1907, 2252
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 4 cut(s) 820, 889, 1929, 2310
BclI TGATCA 1 cut(s) 1162
BcoDI GTCTC 3 cut(s) 878, 1179, 1665
BfaI CTAG 3 cut(s) 518, 578, 732
BfmI CTRYAG 2 cut(s) 1428, 1911
BglII AGATCT 1 cut(s) 282
BisI GCNGC 5 cut(s) 364, 582, 1076, 1546, 1718
BlsI GCNGC 5 cut(s) 365, 583, 1077, 1547, 1719
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 4 cut(s) 820, 889, 1929, 2310
Bme18I GGWCC 1 cut(s) 2306
BmeT110I CYCGRG 1 cut(s) 1182
BmgBI CACGTC 1 cut(s) 2061
BmgT120I GGNCC 2 cut(s) 899, 2306
BmiI GGNNCC 1 cut(s) 1267
BmrFI CCNGG 4 cut(s) 820, 889, 1929, 2310
BmsI GCATC 3 cut(s) 725, 1825, 2253
BpiI GAAGAC 3 cut(s) 396, 1848, 1946
BpmI CTGGAG 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 2218
BsaBI GATNNNNATC 2 cut(s) 1991, 2291
BsaI GGTCTC 2 cut(s) 878, 1179
BsaJI CCNNGG 1 cut(s) 585
BsaWI WCCGGW 3 cut(s) 160, 1153, 1750
Bsc4I CCNNNNNNNGG 4 cut(s) 591, 792, 1648, 2230
Bse118I RCCGGY 1 cut(s) 1750
Bse1I ACTGG 5 cut(s) 74, 664, 800, 840, 2191
Bse3DI GCAATG 3 cut(s) 688, 1400, 1727
Bse8I GATNNNNATC 2 cut(s) 1991, 2291
BseBI CCWGG 4 cut(s) 820, 889, 1929, 2310
BseDI CCNNGG 1 cut(s) 585
BseGI GGATG 4 cut(s) 1613, 1840, 2021, 2268
BseJI GATNNNNATC 2 cut(s) 1991, 2291
BseLI CCNNNNNNNGG 4 cut(s) 591, 792, 1648, 2230
BseMI GCAATG 3 cut(s) 688, 1400, 1727
BseMII CTCAG 2 cut(s) 1257, 2046
BseNI ACTGG 5 cut(s) 74, 664, 800, 840, 2191
BseXI GCAGC 4 cut(s) 375, 568, 1087, 1704
Bsh1236I CGCG 1 cut(s) 1795
BshFI GGCC 3 cut(s) 101, 484, 900
BshTI ACCGGT 1 cut(s) 1750
BsiHKAI GWGCWC 3 cut(s) 1625, 1803, 1888
BsiHKCI CYCGRG 1 cut(s) 1182
BsiSI CCGG 3 cut(s) 161, 1154, 1751
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 4 cut(s) 591, 792, 1648, 2230
BsmAI GTCTC 3 cut(s) 878, 1179, 1665
BsmFI GGGAC 1 cut(s) 968
BsmI GAATGC 3 cut(s) 196, 1547, 1916
BsnI GGCC 3 cut(s) 101, 484, 900
Bso31I GGTCTC 2 cut(s) 878, 1179
BsoBI CYCGRG 1 cut(s) 1182
Bsp119I TTCGAA 1 cut(s) 2218
Bsp1286I GDGCHC 3 cut(s) 1625, 1803, 1888
Bsp1407I TGTACA 1 cut(s) 1871
Bsp143I GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
BspACI CCGC 7 cut(s) 79, 225, 533, 705, 1546, 1649, 1793
BspANI GGCC 3 cut(s) 101, 484, 900
BspCNI CTCAG 2 cut(s) 1256, 2045
BspFNI CGCG 1 cut(s) 1795
BspHI TCATGA 3 cut(s) 1126, 1248, 1816
BspLI GGNNCC 1 cut(s) 1267
BspPI GGATC 6 cut(s) 542, 1091, 1109, 1260, 1273, 1318
BspQI GCTCTTC 2 cut(s) 633, 1383
BspT104I TTCGAA 1 cut(s) 2218
BspTNI GGTCTC 2 cut(s) 878, 1179
BsrDI GCAATG 3 cut(s) 688, 1400, 1727
BsrFI RCCGGY 1 cut(s) 1750
BsrGI TGTACA 1 cut(s) 1871
BsrI ACTGG 5 cut(s) 74, 664, 800, 840, 2191
BssAI RCCGGY 1 cut(s) 1750
BssECI CCNNGG 1 cut(s) 585
BssMI GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
BssNAI GTATAC 1 cut(s) 1097
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 585
Bst1107I GTATAC 1 cut(s) 1097
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 4 cut(s) 820, 889, 1929, 2310
Bst4CI ACNGT 7 cut(s) 53, 621, 791, 1094, 1615, 1876, 1924
Bst6I CTCTTC 4 cut(s) 336, 464, 633, 1383
BstAPI GCANNNNNTGC 1 cut(s) 716
BstAUI TGTACA 1 cut(s) 1871
BstBI TTCGAA 1 cut(s) 2218
BstC8I GCNNGC 4 cut(s) 597, 841, 2232, 2339
BstDEI CTNAG 2 cut(s) 1243, 2032
BstF5I GGATG 4 cut(s) 1613, 1840, 2021, 2268
BstFNI CGCG 1 cut(s) 1795
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 9 cut(s) 285, 550, 1086, 1117, 1165, 1268, 1326, 2115, 2331
BstMAI GTCTC 3 cut(s) 878, 1179, 1665
BstMBI GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
BstMWI GCNNNNNNNGC 4 cut(s) 272, 539, 716, 1714
BstNI CCWGG 4 cut(s) 820, 889, 1929, 2310
BstNSI RCATGY 2 cut(s) 209, 599
BstSCI CCNGG 4 cut(s) 818, 887, 1927, 2308
BstSFI CTRYAG 2 cut(s) 1428, 1911
BstUI CGCG 1 cut(s) 1795
BstV1I GCAGC 4 cut(s) 375, 568, 1087, 1704
BstV2I GAAGAC 3 cut(s) 396, 1848, 1946
BstX2I RGATCY 4 cut(s) 282, 547, 1083, 1265
BstYI RGATCY 4 cut(s) 282, 547, 1083, 1265
BstZ17I GTATAC 1 cut(s) 1097
BsuRI GGCC 3 cut(s) 101, 484, 900
BtrI CACGTC 1 cut(s) 2061
BtsCI GGATG 4 cut(s) 1613, 1840, 2021, 2268
BtsI GCAGTG 2 cut(s) 261, 1085
BtsIMutI CAGTG 7 cut(s) 67, 261, 657, 1057, 1085, 1455, 1920
Cac8I GCNNGC 4 cut(s) 597, 841, 2232, 2339
CciI TCATGA 3 cut(s) 1126, 1248, 1816
CfoI GCGC 1 cut(s) 368
Cfr10I RCCGGY 1 cut(s) 1750
Cfr13I GGNCC 2 cut(s) 899, 2306
Csp6I GTAC 6 cut(s) 9, 305, 761, 1611, 1748, 1872
CspAI ACCGGT 1 cut(s) 1750
CviQI GTAC 6 cut(s) 9, 305, 761, 1611, 1748, 1872
DdeI CTNAG 2 cut(s) 1243, 2032
DpnI GATC 9 cut(s) 284, 549, 1085, 1116, 1164, 1267, 1325, 2114, 2330
DpnII GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
DraIII CACNNNGTG 1 cut(s) 1796
EaeI YGGCCR 2 cut(s) 99, 482
Eam1104I CTCTTC 4 cut(s) 336, 464, 633, 1383
EarI CTCTTC 4 cut(s) 336, 464, 633, 1383
EciI GGCGGA 1 cut(s) 720
Ecl136II GAGCTC 2 cut(s) 1623, 1801
Eco130I CCWWGG 1 cut(s) 585
Eco24I GRGCYC 2 cut(s) 1625, 1803
Eco31I GGTCTC 2 cut(s) 878, 1179
Eco32I GATATC 2 cut(s) 523, 1134
Eco47I GGWCC 1 cut(s) 2306
Eco53kI GAGCTC 2 cut(s) 1623, 1801
Eco57I CTGAAG 2 cut(s) 329, 1033
Eco88I CYCGRG 1 cut(s) 1182
EcoICRI GAGCTC 2 cut(s) 1623, 1801
EcoRI GAATTC 1 cut(s) 1343
EcoRII CCWGG 4 cut(s) 818, 887, 1927, 2308
EcoRV GATATC 2 cut(s) 523, 1134
EcoT14I CCWWGG 1 cut(s) 585
EcoT22I ATGCAT 1 cut(s) 740
EcoT38I GRGCYC 2 cut(s) 1625, 1803
ErhI CCWWGG 1 cut(s) 585
FaqI GGGAC 1 cut(s) 968
FauI CCCGC 3 cut(s) 72, 218, 1642
FauNDI CATATG 2 cut(s) 1644, 1783
FbaI TGATCA 1 cut(s) 1162
FblI GTMKAC 1 cut(s) 1096
Fnu4HI GCNGC 5 cut(s) 364, 582, 1076, 1546, 1718
FokI GGATG 4 cut(s) 1620, 1847, 2008, 2275
FriOI GRGCYC 2 cut(s) 1625, 1803
Fsp4HI GCNGC 5 cut(s) 364, 582, 1076, 1546, 1718
FspBI CTAG 3 cut(s) 518, 578, 732
GlaI GCGC 1 cut(s) 367
GluI GCNGC 5 cut(s) 364, 582, 1076, 1546, 1718
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 3 cut(s) 101, 484, 900
HapII CCGG 3 cut(s) 161, 1154, 1751
HhaI GCGC 1 cut(s) 368
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 6 cut(s) 41, 152, 1296, 1766, 1844, 2052
HpaII CCGG 3 cut(s) 161, 1154, 1751
HphI GGTGA 4 cut(s) 428, 757, 2167, 2201
Hpy166II GTNNAC 3 cut(s) 1097, 1230, 1286
Hpy188I TCNGA 3 cut(s) 157, 246, 2002
Hpy188III TCNNGA 9 cut(s) 332, 503, 1127, 1166, 1184, 1249, 1405, 1817, 2137
Hpy8I GTNNAC 3 cut(s) 1097, 1230, 1286
HpyCH4III ACNGT 7 cut(s) 53, 621, 791, 1094, 1615, 1876, 1924
HpyCH4IV ACGT 4 cut(s) 117, 1351, 2060, 2065
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 539, 716, 1714
HpyF3I CTNAG 2 cut(s) 1243, 2032
HpySE526I ACGT 4 cut(s) 117, 1351, 2060, 2065
HspAI GCGC 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 1162
Kzo9I GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
LguI GCTCTTC 2 cut(s) 633, 1383
LmnI GCTCC 2 cut(s) 707, 1644
Lsp1109I GCAGC 4 cut(s) 375, 568, 1087, 1704
LweI GCATC 3 cut(s) 725, 1825, 2253
MaeI CTAG 3 cut(s) 518, 578, 732
MaeII ACGT 4 cut(s) 117, 1351, 2060, 2065
MalI GATC 9 cut(s) 284, 549, 1085, 1116, 1164, 1267, 1325, 2114, 2330
MboI GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
MfeI CAATTG 1 cut(s) 1237
MflI RGATCY 4 cut(s) 282, 547, 1083, 1265
MhlI GDGCHC 3 cut(s) 1625, 1803, 1888
MlsI TGGCCA 1 cut(s) 484
MluNI TGGCCA 1 cut(s) 484
MlyI GAGTC 1 cut(s) 1838
MmeI TCCRAC 1 cut(s) 1202
Mox20I TGGCCA 1 cut(s) 484
Mph1103I ATGCAT 1 cut(s) 740
MscI TGGCCA 1 cut(s) 484
MslI CAYNNNNRTG 1 cut(s) 2180
Msp20I TGGCCA 1 cut(s) 484
MspI CCGG 3 cut(s) 161, 1154, 1751
MspR9I CCNGG 4 cut(s) 820, 889, 1929, 2310
MunI CAATTG 1 cut(s) 1237
Mva1269I GAATGC 3 cut(s) 196, 1547, 1916
MvaI CCWGG 4 cut(s) 820, 889, 1929, 2310
MvnI CGCG 1 cut(s) 1795
MwoI GCNNNNNNNGC 4 cut(s) 272, 539, 716, 1714
NdeI CATATG 2 cut(s) 1644, 1783
NdeII GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
NlaIV GGNNCC 1 cut(s) 1267
NmuCI GTSAC 5 cut(s) 856, 1453, 1786, 2017, 2061
NsiI ATGCAT 1 cut(s) 740
NspI RCATGY 2 cut(s) 209, 599
NspV TTCGAA 1 cut(s) 2218
PaeI GCATGC 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 1182
PagI TCATGA 3 cut(s) 1126, 1248, 1816
PciSI GCTCTTC 2 cut(s) 633, 1383
PctI GAATGC 3 cut(s) 196, 1547, 1916
PfeI GAWTC 5 cut(s) 41, 152, 1296, 1766, 2052
PfoI TCCNGGA 1 cut(s) 818
PinAI ACCGGT 1 cut(s) 1750
PkrI GCNGC 5 cut(s) 365, 583, 1077, 1547, 1719
PleI GAGTC 1 cut(s) 1838
PpsI GAGTC 1 cut(s) 1838
PshBI ATTAAT 2 cut(s) 777, 1826
PsiI TTATAA 1 cut(s) 1563
Psp124BI GAGCTC 2 cut(s) 1625, 1803
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 4 cut(s) 818, 887, 1927, 2308
PspGI CCWGG 4 cut(s) 818, 887, 1927, 2308
PspN4I GGNNCC 1 cut(s) 1267
PspPI GGNCC 2 cut(s) 899, 2306
PsuI RGATCY 4 cut(s) 282, 547, 1083, 1265
RsaI GTAC 6 cut(s) 10, 306, 762, 1612, 1749, 1873
RsaNI GTAC 6 cut(s) 9, 305, 761, 1611, 1748, 1872
RseI CAYNNNNRTG 1 cut(s) 2180
SacI GAGCTC 2 cut(s) 1625, 1803
SapI GCTCTTC 2 cut(s) 633, 1383
SatI GCNGC 5 cut(s) 364, 582, 1076, 1546, 1718
Sau3AI GATC 9 cut(s) 282, 547, 1083, 1114, 1162, 1265, 1323, 2112, 2328
Sau96I GGNCC 2 cut(s) 899, 2306
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 1 cut(s) 1838
ScrFI CCNGG 4 cut(s) 820, 889, 1929, 2310
SduI GDGCHC 3 cut(s) 1625, 1803, 1888
SfaNI GCATC 3 cut(s) 725, 1825, 2253
SfcI CTRYAG 2 cut(s) 1428, 1911
Sfr274I CTCGAG 1 cut(s) 1182
SfuI TTCGAA 1 cut(s) 2218
SinI GGWCC 1 cut(s) 2306
SlaI CTCGAG 1 cut(s) 1182
SmiMI CAYNNNNRTG 1 cut(s) 2180
SmlI CTYRAG 1 cut(s) 1182
SmoI CTYRAG 1 cut(s) 1182
SphI GCATGC 1 cut(s) 599
SsiI CCGC 7 cut(s) 79, 225, 533, 705, 1546, 1649, 1793
SspI AATATT 2 cut(s) 1070, 2316
SspMI CTAG 3 cut(s) 518, 578, 732
SstI GAGCTC 2 cut(s) 1625, 1803
StyD4I CCNGG 4 cut(s) 818, 887, 1927, 2308
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 7 cut(s) 53, 621, 791, 1094, 1615, 1876, 1924
TaiI ACGT 4 cut(s) 120, 1354, 2063, 2068
TaqI TCGA 7 cut(s) 171, 807, 1183, 1423, 1477, 2138, 2218
TaqII GACCGA 1 cut(s) 2105
TatI WGTACW 4 cut(s) 8, 760, 1610, 1871
TauI GCSGC 1 cut(s) 1548
TfiI GAWTC 5 cut(s) 41, 152, 1296, 1766, 2052
TscAI CASTG 7 cut(s) 74, 268, 664, 1057, 1085, 1462, 1927
TseFI GTSAC 5 cut(s) 856, 1453, 1786, 2017, 2061
TseI GCWGC 4 cut(s) 363, 581, 1075, 1717
Tsp45I GTSAC 5 cut(s) 856, 1453, 1786, 2017, 2061
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 7 cut(s) 74, 268, 664, 1057, 1085, 1462, 1927
VpaK11BI GGWCC 1 cut(s) 2306
VspI ATTAAT 2 cut(s) 777, 1826
XapI RAATTY 2 cut(s) 906, 1343
XceI RCATGY 2 cut(s) 209, 599
XhoI CTCGAG 1 cut(s) 1182
XmiI GTMKAC 1 cut(s) 1096
XspI CTAG 3 cut(s) 518, 578, 732
ZrmI AGTACT 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.