protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 262 - 368 | 3.6e-17 | Domain of unknown function |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 593, 855, 1247, 1280 |
| AclWI | GGATC | 1 cut(s) | 221 |
| AcsI | RAATTY | 6 cut(s) | 184, 374, 480, 666, 706, 1027 |
| AcvI | CACGTG | 2 cut(s) | 13, 719 |
| AdeI | CACNNNGTG | 1 cut(s) | 536 |
| AfaI | GTAC | 1 cut(s) | 51 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 777 |
| AgeI | ACCGGT | 1 cut(s) | 872 |
| AjiI | CACGTC | 1 cut(s) | 984 |
| AjnI | CCWGG | 1 cut(s) | 850 |
| AluBI | AGCT | 4 cut(s) | 269, 353, 788, 848 |
| AluI | AGCT | 4 cut(s) | 269, 353, 788, 848 |
| Alw21I | GWGCWC | 1 cut(s) | 811 |
| AlwI | GGATC | 1 cut(s) | 221 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 851 |
| AoxI | GGCC | 1 cut(s) | 1039 |
| ApeKI | GCWGC | 2 cut(s) | 562, 785 |
| ApoI | RAATTY | 6 cut(s) | 184, 374, 480, 666, 706, 1027 |
| AsiGI | ACCGGT | 1 cut(s) | 872 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 63 |
| AspS9I | GGNCC | 1 cut(s) | 1223 |
| AsuHPI | GGTGA | 1 cut(s) | 670 |
| AvaII | GGWCC | 1 cut(s) | 1223 |
| BaeGI | GKGCMC | 2 cut(s) | 1096, 1286 |
| BbrPI | CACGTG | 2 cut(s) | 13, 719 |
| BbsI | GAAGAC | 3 cut(s) | 337, 869, 1005 |
| Bbv12I | GWGCWC | 1 cut(s) | 811 |
| BbvI | GCAGC | 2 cut(s) | 549, 797 |
| BccI | CCATC | 1 cut(s) | 1106 |
| BciT130I | CCWGG | 1 cut(s) | 852 |
| BclI | TGATCA | 1 cut(s) | 1077 |
| BfaI | CTAG | 2 cut(s) | 138, 266 |
| BfmI | CTRYAG | 2 cut(s) | 801, 834 |
| BisI | GCNGC | 2 cut(s) | 563, 786 |
| BlsI | GCNGC | 2 cut(s) | 564, 787 |
| Bme1390I | CCNGG | 1 cut(s) | 852 |
| Bme18I | GGWCC | 1 cut(s) | 1223 |
| BmgBI | CACGTC | 1 cut(s) | 984 |
| BmgT120I | GGNCC | 1 cut(s) | 1223 |
| BmiI | GGNNCC | 1 cut(s) | 1016 |
| BmrFI | CCNGG | 1 cut(s) | 852 |
| BmsI | GCATC | 1 cut(s) | 1202 |
| BpiI | GAAGAC | 3 cut(s) | 337, 869, 1005 |
| BsaAI | YACGTR | 2 cut(s) | 13, 719 |
| BsaJI | CCNNGG | 1 cut(s) | 87 |
| BsaWI | WCCGGW | 2 cut(s) | 872, 1135 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 777 |
| Bse118I | RCCGGY | 1 cut(s) | 872 |
| BseBI | CCWGG | 1 cut(s) | 852 |
| BseDI | CCNNGG | 1 cut(s) | 87 |
| BseGI | GGATG | 1 cut(s) | 760 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 777 |
| BseMII | CTCAG | 1 cut(s) | 936 |
| BseRI | GAGGAG | 1 cut(s) | 668 |
| BseSI | GKGCMC | 2 cut(s) | 1096, 1286 |
| BseXI | GCAGC | 2 cut(s) | 549, 797 |
| BshFI | GGCC | 1 cut(s) | 1041 |
| BshTI | ACCGGT | 1 cut(s) | 872 |
| BsiHKAI | GWGCWC | 1 cut(s) | 811 |
| BsiSI | CCGG | 2 cut(s) | 873, 1136 |
| BslFI | GGGAC | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 777 |
| BsmFI | GGGAC | 1 cut(s) | 83 |
| BsmI | GAATGC | 2 cut(s) | 16, 839 |
| BsnI | GGCC | 1 cut(s) | 1041 |
| Bsp1286I | GDGCHC | 3 cut(s) | 811, 1096, 1286 |
| Bsp143I | GATC | 3 cut(s) | 213, 1077, 1263 |
| BspACI | CCGC | 4 cut(s) | 593, 855, 1247, 1280 |
| BspANI | GGCC | 1 cut(s) | 1041 |
| BspCNI | CTCAG | 1 cut(s) | 935 |
| BspLI | GGNNCC | 1 cut(s) | 1016 |
| BspPI | GGATC | 1 cut(s) | 221 |
| BsrFI | RCCGGY | 1 cut(s) | 872 |
| BssAI | RCCGGY | 1 cut(s) | 872 |
| BssECI | CCNNGG | 1 cut(s) | 87 |
| BssMI | GATC | 3 cut(s) | 213, 1077, 1263 |
| BssT1I | CCWWGG | 1 cut(s) | 87 |
| Bst2UI | CCWGG | 1 cut(s) | 852 |
| Bst4CI | ACNGT | 3 cut(s) | 110, 802, 1156 |
| Bst6I | CTCTTC | 1 cut(s) | 656 |
| BstBAI | YACGTR | 2 cut(s) | 13, 719 |
| BstC8I | GCNNGC | 2 cut(s) | 1249, 1282 |
| BstDEI | CTNAG | 1 cut(s) | 922 |
| BstF5I | GGATG | 1 cut(s) | 760 |
| BstKTI | GATC | 3 cut(s) | 216, 1080, 1266 |
| BstMBI | GATC | 3 cut(s) | 213, 1077, 1263 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 767, 845 |
| BstNI | CCWGG | 1 cut(s) | 852 |
| BstNSI | RCATGY | 1 cut(s) | 371 |
| BstSCI | CCNGG | 1 cut(s) | 850 |
| BstSFI | CTRYAG | 2 cut(s) | 801, 834 |
| BstSLI | GKGCMC | 2 cut(s) | 1096, 1286 |
| BstV1I | GCAGC | 2 cut(s) | 549, 797 |
| BstV2I | GAAGAC | 3 cut(s) | 337, 869, 1005 |
| BsuRI | GGCC | 1 cut(s) | 1041 |
| BtrI | CACGTC | 1 cut(s) | 984 |
| BtsCI | GGATG | 1 cut(s) | 760 |
| Cac8I | GCNNGC | 2 cut(s) | 1249, 1282 |
| CaiI | CAGNNNCTG | 1 cut(s) | 851 |
| Cfr10I | RCCGGY | 1 cut(s) | 872 |
| Cfr13I | GGNCC | 1 cut(s) | 1223 |
| Csp6I | GTAC | 1 cut(s) | 50 |
| CspAI | ACCGGT | 1 cut(s) | 872 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 22, 57 |
| CviAII | CATG | 7 cut(s) | 181, 232, 245, 368, 686, 772, 1072 |
| CviJI | RGCY | 7 cut(s) | 269, 353, 770, 788, 848, 976, 1041 |
| CviKI_1 | RGCY | 7 cut(s) | 269, 353, 770, 788, 848, 976, 1041 |
| CviQI | GTAC | 1 cut(s) | 50 |
| DdeI | CTNAG | 1 cut(s) | 922 |
| DpnI | GATC | 3 cut(s) | 215, 1079, 1265 |
| DpnII | GATC | 3 cut(s) | 213, 1077, 1263 |
| DraIII | CACNNNGTG | 1 cut(s) | 536 |
| Eam1104I | CTCTTC | 1 cut(s) | 656 |
| EarI | CTCTTC | 1 cut(s) | 656 |
| EciI | GGCGGA | 2 cut(s) | 582, 870 |
| Eco130I | CCWWGG | 1 cut(s) | 87 |
| Eco147I | AGGCCT | 1 cut(s) | 1041 |
| Eco32I | GATATC | 1 cut(s) | 421 |
| Eco47I | GGWCC | 1 cut(s) | 1223 |
| Eco72I | CACGTG | 2 cut(s) | 13, 719 |
| EcoRI | GAATTC | 1 cut(s) | 666 |
| EcoRII | CCWGG | 1 cut(s) | 850 |
| EcoRV | GATATC | 1 cut(s) | 421 |
| EcoT14I | CCWWGG | 1 cut(s) | 87 |
| EcoT22I | ATGCAT | 2 cut(s) | 687, 894 |
| ErhI | CCWWGG | 1 cut(s) | 87 |
| FaeI | CATG | 7 cut(s) | 184, 235, 248, 371, 689, 775, 1075 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 329, 361 |
| FaqI | GGGAC | 1 cut(s) | 83 |
| FatI | CATG | 7 cut(s) | 180, 231, 244, 367, 685, 771, 1071 |
| FauI | CCCGC | 2 cut(s) | 1240, 1273 |
| FauNDI | CATATG | 1 cut(s) | 387 |
| FbaI | TGATCA | 1 cut(s) | 1077 |
| Fnu4HI | GCNGC | 2 cut(s) | 563, 786 |
| FokI | GGATG | 1 cut(s) | 767 |
| Fsp4HI | GCNGC | 2 cut(s) | 563, 786 |
| FspBI | CTAG | 2 cut(s) | 138, 266 |
| GluI | GCNGC | 2 cut(s) | 563, 786 |
| HaeIII | GGCC | 1 cut(s) | 1041 |
| HapII | CCGG | 2 cut(s) | 873, 1136 |
| Hin1II | CATG | 7 cut(s) | 184, 235, 248, 371, 689, 775, 1075 |
| HincII | GTYRAC | 2 cut(s) | 205, 987 |
| HindII | GTYRAC | 2 cut(s) | 205, 987 |
| HinfI | GANTC | 2 cut(s) | 71, 736 |
| HpaII | CCGG | 2 cut(s) | 873, 1136 |
| HphI | GGTGA | 1 cut(s) | 670 |
| Hpy166II | GTNNAC | 5 cut(s) | 205, 306, 623, 722, 987 |
| Hpy188I | TCNGA | 3 cut(s) | 251, 813, 925 |
| Hpy188III | TCNNGA | 5 cut(s) | 41, 68, 148, 473, 907 |
| Hpy8I | GTNNAC | 5 cut(s) | 205, 306, 623, 722, 987 |
| Hpy99I | CGWCG | 2 cut(s) | 416, 1166 |
| HpyAV | CCTTC | 1 cut(s) | 1236 |
| HpyCH4III | ACNGT | 3 cut(s) | 110, 802, 1156 |
| HpyCH4IV | ACGT | 6 cut(s) | 12, 201, 718, 965, 983, 1082 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 767, 845 |
| HpyF3I | CTNAG | 1 cut(s) | 922 |
| HpySE526I | ACGT | 6 cut(s) | 12, 201, 718, 965, 983, 1082 |
| Hsp92II | CATG | 7 cut(s) | 184, 235, 248, 371, 689, 775, 1075 |
| Ksp22I | TGATCA | 1 cut(s) | 1077 |
| Kzo9I | GATC | 3 cut(s) | 213, 1077, 1263 |
| LmnI | GCTCC | 1 cut(s) | 853 |
| LpnPI | CCDG | 5 cut(s) | 327, 837, 864, 886, 1149 |
| Lsp1109I | GCAGC | 2 cut(s) | 549, 797 |
| LweI | GCATC | 1 cut(s) | 1202 |
| MaeI | CTAG | 2 cut(s) | 138, 266 |
| MaeII | ACGT | 6 cut(s) | 12, 201, 718, 965, 983, 1082 |
| MaeIII | GTNAC | 4 cut(s) | 94, 379, 817, 866 |
| MalI | GATC | 3 cut(s) | 215, 1079, 1265 |
| MboI | GATC | 3 cut(s) | 213, 1077, 1263 |
| MboII | GAAGA | 9 cut(s) | 18, 337, 443, 535, 673, 783, 869, 936, 1010 |
| MhlI | GDGCHC | 3 cut(s) | 811, 1096, 1286 |
| MlyI | GAGTC | 2 cut(s) | 65, 745 |
| MmeI | TCCRAC | 1 cut(s) | 428 |
| MnlI | CCTC | 4 cut(s) | 90, 646, 649, 1202 |
| Mph1103I | ATGCAT | 2 cut(s) | 687, 894 |
| MroXI | GAANNNNTTC | 1 cut(s) | 63 |
| MseI | TTAA | 4 cut(s) | 324, 549, 600, 749 |
| MslI | CAYNNNNRTG | 2 cut(s) | 390, 690 |
| MspI | CCGG | 2 cut(s) | 873, 1136 |
| MspR9I | CCNGG | 1 cut(s) | 852 |
| Mva1269I | GAATGC | 2 cut(s) | 16, 839 |
| MvaI | CCWGG | 1 cut(s) | 852 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 767, 845 |
| NdeI | CATATG | 1 cut(s) | 387 |
| NdeII | GATC | 3 cut(s) | 213, 1077, 1263 |
| NlaIII | CATG | 7 cut(s) | 184, 235, 248, 371, 689, 775, 1075 |
| NlaIV | GGNNCC | 1 cut(s) | 1016 |
| NsiI | ATGCAT | 2 cut(s) | 687, 894 |
| NspI | RCATGY | 1 cut(s) | 371 |
| PceI | AGGCCT | 1 cut(s) | 1041 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 60, 962 |
| PctI | GAATGC | 2 cut(s) | 16, 839 |
| PdmI | GAANNNNTTC | 1 cut(s) | 63 |
| PinAI | ACCGGT | 1 cut(s) | 872 |
| PkrI | GCNGC | 2 cut(s) | 564, 787 |
| PleI | GAGTC | 2 cut(s) | 65, 744 |
| PmaCI | CACGTG | 2 cut(s) | 13, 719 |
| PmlI | CACGTG | 2 cut(s) | 13, 719 |
| PpsI | GAGTC | 2 cut(s) | 65, 744 |
| Ppu21I | YACGTR | 2 cut(s) | 13, 719 |
| Psp6I | CCWGG | 1 cut(s) | 850 |
| PspCI | CACGTG | 2 cut(s) | 13, 719 |
| PspGI | CCWGG | 1 cut(s) | 850 |
| PspN4I | GGNNCC | 1 cut(s) | 1016 |
| PspPI | GGNCC | 1 cut(s) | 1223 |
| PstNI | CAGNNNCTG | 1 cut(s) | 851 |
| RsaI | GTAC | 1 cut(s) | 51 |
| RsaNI | GTAC | 1 cut(s) | 50 |
| RseI | CAYNNNNRTG | 2 cut(s) | 390, 690 |
| SaqAI | TTAA | 4 cut(s) | 324, 549, 600, 749 |
| SatI | GCNGC | 2 cut(s) | 563, 786 |
| Sau3AI | GATC | 3 cut(s) | 213, 1077, 1263 |
| Sau96I | GGNCC | 1 cut(s) | 1223 |
| SchI | GAGTC | 2 cut(s) | 65, 745 |
| ScrFI | CCNGG | 1 cut(s) | 852 |
| SduI | GDGCHC | 3 cut(s) | 811, 1096, 1286 |
| SfaNI | GCATC | 1 cut(s) | 1202 |
| SfcI | CTRYAG | 2 cut(s) | 801, 834 |
| SinI | GGWCC | 1 cut(s) | 1223 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 390, 690 |
| SseBI | AGGCCT | 1 cut(s) | 1041 |
| SsiI | CCGC | 4 cut(s) | 593, 855, 1247, 1280 |
| SspMI | CTAG | 2 cut(s) | 138, 266 |
| StuI | AGGCCT | 1 cut(s) | 1041 |
| StyD4I | CCNGG | 1 cut(s) | 850 |
| StyI | CCWWGG | 1 cut(s) | 87 |
| TaaI | ACNGT | 3 cut(s) | 110, 802, 1156 |
| TaiI | ACGT | 6 cut(s) | 15, 204, 721, 968, 986, 1085 |
| TaqI | TCGA | 4 cut(s) | 239, 651, 1229, 1262 |
| Tru1I | TTAA | 4 cut(s) | 324, 549, 600, 749 |
| Tru9I | TTAA | 4 cut(s) | 324, 549, 600, 749 |
| TseI | GCWGC | 2 cut(s) | 562, 785 |
| TspDTI | ATGAA | 6 cut(s) | 197, 248, 444, 702, 771, 788 |
| VpaK11BI | GGWCC | 1 cut(s) | 1223 |
| XapI | RAATTY | 6 cut(s) | 184, 374, 480, 666, 706, 1027 |
| XceI | RCATGY | 1 cut(s) | 371 |
| XmnI | GAANNNNTTC | 1 cut(s) | 63 |
| XspI | CTAG | 2 cut(s) | 138, 266 |
| Zsp2I | ATGCAT | 2 cut(s) | 687, 894 |