protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PGG | PF13962 | 179 - 290 | 1.3e-23 | Domain of unknown function |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 249, 686 |
| AccBSI | CCGCTC | 1 cut(s) | 286 |
| AccII | CGCG | 1 cut(s) | 44 |
| AciI | CCGC | 2 cut(s) | 286, 651 |
| AclI | AACGTT | 1 cut(s) | 1021 |
| AclWI | GGATC | 1 cut(s) | 278 |
| AcsI | RAATTY | 1 cut(s) | 744 |
| AfaI | GTAC | 2 cut(s) | 419, 441 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 267 |
| AgsI | TTSAA | 1 cut(s) | 921 |
| AjiI | CACGTC | 2 cut(s) | 16, 753 |
| AjnI | CCWGG | 2 cut(s) | 379, 622 |
| AluBI | AGCT | 3 cut(s) | 40, 119, 325 |
| AluI | AGCT | 3 cut(s) | 40, 119, 325 |
| Alw21I | GWGCWC | 1 cut(s) | 583 |
| Alw26I | GTCTC | 2 cut(s) | 425, 545 |
| AlwI | GGATC | 1 cut(s) | 278 |
| AoxI | GGCC | 1 cut(s) | 257 |
| ApeKI | GCWGC | 4 cut(s) | 386, 400, 605, 860 |
| ApoI | RAATTY | 1 cut(s) | 744 |
| AspA2I | CCTAGG | 1 cut(s) | 446 |
| AspS9I | GGNCC | 1 cut(s) | 258 |
| AsuHPI | GGTGA | 1 cut(s) | 301 |
| AsuII | TTCGAA | 1 cut(s) | 114 |
| AvrII | CCTAGG | 1 cut(s) | 446 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 423, 456 |
| Bbv12I | GWGCWC | 1 cut(s) | 583 |
| BbvI | GCAGC | 4 cut(s) | 398, 412, 592, 847 |
| BccI | CCATC | 3 cut(s) | 230, 358, 602 |
| BciT130I | CCWGG | 2 cut(s) | 381, 624 |
| BcoDI | GTCTC | 2 cut(s) | 425, 545 |
| BfaI | CTAG | 2 cut(s) | 447, 965 |
| BisI | GCNGC | 4 cut(s) | 387, 401, 606, 861 |
| BlnI | CCTAGG | 1 cut(s) | 446 |
| BlsI | GCNGC | 4 cut(s) | 388, 402, 607, 862 |
| Bme1390I | CCNGG | 2 cut(s) | 381, 624 |
| BmgBI | CACGTC | 2 cut(s) | 16, 753 |
| BmgT120I | GGNCC | 1 cut(s) | 258 |
| BmiI | GGNNCC | 1 cut(s) | 260 |
| BmrFI | CCNGG | 2 cut(s) | 381, 624 |
| BmsI | GCATC | 3 cut(s) | 85, 685, 939 |
| BpmI | CTGGAG | 1 cut(s) | 645 |
| Bpu14I | TTCGAA | 1 cut(s) | 114 |
| BpuEI | CTTGAG | 1 cut(s) | 476 |
| Bsa29I | ATCGAT | 1 cut(s) | 660 |
| BsaBI | GATNNNNATC | 1 cut(s) | 75 |
| BsaJI | CCNNGG | 3 cut(s) | 380, 446, 488 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 267 |
| Bse118I | RCCGGY | 1 cut(s) | 641 |
| Bse1I | ACTGG | 1 cut(s) | 929 |
| Bse3DI | GCAATG | 2 cut(s) | 389, 419 |
| Bse8I | GATNNNNATC | 1 cut(s) | 75 |
| BseBI | CCWGG | 2 cut(s) | 381, 624 |
| BseCI | ATCGAT | 1 cut(s) | 660 |
| BseDI | CCNNGG | 3 cut(s) | 380, 446, 488 |
| BseGI | GGATG | 2 cut(s) | 549, 954 |
| BseJI | GATNNNNATC | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 267 |
| BseMI | GCAATG | 2 cut(s) | 389, 419 |
| BseNI | ACTGG | 1 cut(s) | 929 |
| BseXI | GCAGC | 4 cut(s) | 398, 412, 592, 847 |
| BseYI | CCCAGC | 1 cut(s) | 335 |
| BsgI | GTGCAG | 1 cut(s) | 339 |
| Bsh1236I | CGCG | 1 cut(s) | 44 |
| BshFI | GGCC | 1 cut(s) | 259 |
| BshVI | ATCGAT | 1 cut(s) | 660 |
| BsiHKAI | GWGCWC | 1 cut(s) | 583 |
| BsiSI | CCGG | 1 cut(s) | 642 |
| BslFI | GGGAC | 2 cut(s) | 331, 941 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 267 |
| BsmAI | GTCTC | 2 cut(s) | 425, 545 |
| BsmFI | GGGAC | 2 cut(s) | 331, 941 |
| BsmI | GAATGC | 1 cut(s) | 653 |
| BsnI | GGCC | 1 cut(s) | 259 |
| Bsp119I | TTCGAA | 1 cut(s) | 114 |
| Bsp1286I | GDGCHC | 1 cut(s) | 583 |
| Bsp143I | GATC | 1 cut(s) | 270 |
| BspACI | CCGC | 2 cut(s) | 286, 651 |
| BspANI | GGCC | 1 cut(s) | 259 |
| BspDI | ATCGAT | 1 cut(s) | 660 |
| BspFNI | CGCG | 1 cut(s) | 44 |
| BspLI | GGNNCC | 1 cut(s) | 260 |
| BspPI | GGATC | 1 cut(s) | 278 |
| BspT104I | TTCGAA | 1 cut(s) | 114 |
| BsrBI | CCGCTC | 1 cut(s) | 286 |
| BsrDI | GCAATG | 2 cut(s) | 389, 419 |
| BsrFI | RCCGGY | 1 cut(s) | 641 |
| BsrI | ACTGG | 1 cut(s) | 929 |
| BssAI | RCCGGY | 1 cut(s) | 641 |
| BssECI | CCNNGG | 3 cut(s) | 380, 446, 488 |
| BssMI | GATC | 1 cut(s) | 270 |
| BssT1I | CCWWGG | 2 cut(s) | 446, 488 |
| Bst2UI | CCWGG | 2 cut(s) | 381, 624 |
| Bst4CI | ACNGT | 2 cut(s) | 515, 571 |
| Bst6I | CTCTTC | 1 cut(s) | 45 |
| BstBI | TTCGAA | 1 cut(s) | 114 |
| BstC8I | GCNNGC | 2 cut(s) | 42, 46 |
| BstF5I | GGATG | 2 cut(s) | 549, 954 |
| BstFNI | CGCG | 1 cut(s) | 44 |
| BstKTI | GATC | 1 cut(s) | 273 |
| BstMAI | GTCTC | 2 cut(s) | 425, 545 |
| BstMBI | GATC | 1 cut(s) | 270 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 104, 400, 409, 857 |
| BstNI | CCWGG | 2 cut(s) | 381, 624 |
| BstSCI | CCNGG | 2 cut(s) | 379, 622 |
| BstUI | CGCG | 1 cut(s) | 44 |
| BstV1I | GCAGC | 4 cut(s) | 398, 412, 592, 847 |
| BstX2I | RGATCY | 1 cut(s) | 270 |
| BstYI | RGATCY | 1 cut(s) | 270 |
| Bsu15I | ATCGAT | 1 cut(s) | 660 |
| BsuRI | GGCC | 1 cut(s) | 259 |
| BsuTUI | ATCGAT | 1 cut(s) | 660 |
| BtrI | CACGTC | 2 cut(s) | 16, 753 |
| BtsCI | GGATG | 2 cut(s) | 549, 954 |
| BtsI | GCAGTG | 1 cut(s) | 93 |
| BtsIMutI | CAGTG | 3 cut(s) | 93, 520, 567 |
| Cac8I | GCNNGC | 2 cut(s) | 42, 46 |
| Cfr10I | RCCGGY | 1 cut(s) | 641 |
| Cfr13I | GGNCC | 1 cut(s) | 258 |
| ClaI | ATCGAT | 1 cut(s) | 660 |
| Csp6I | GTAC | 2 cut(s) | 418, 440 |
| CviAII | CATG | 3 cut(s) | 331, 598, 841 |
| CviJI | RGCY | 7 cut(s) | 40, 119, 259, 325, 335, 451, 645 |
| CviKI_1 | RGCY | 7 cut(s) | 40, 119, 259, 325, 335, 451, 645 |
| CviQI | GTAC | 2 cut(s) | 418, 440 |
| DpnI | GATC | 1 cut(s) | 272 |
| DpnII | GATC | 1 cut(s) | 270 |
| DraI | TTTAAA | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 1 cut(s) | 45 |
| EarI | CTCTTC | 1 cut(s) | 45 |
| Eco130I | CCWWGG | 2 cut(s) | 446, 488 |
| EcoRI | GAATTC | 1 cut(s) | 744 |
| EcoRII | CCWGG | 2 cut(s) | 379, 622 |
| EcoT14I | CCWWGG | 2 cut(s) | 446, 488 |
| EcoT22I | ATGCAT | 1 cut(s) | 78 |
| ErhI | CCWWGG | 2 cut(s) | 446, 488 |
| FaeI | CATG | 3 cut(s) | 334, 601, 844 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 351, 383, 462, 494 |
| FaqI | GGGAC | 2 cut(s) | 331, 941 |
| FatI | CATG | 3 cut(s) | 330, 597, 840 |
| FauI | CCCGC | 2 cut(s) | 279, 658 |
| Fnu4HI | GCNGC | 4 cut(s) | 387, 401, 606, 861 |
| FokI | GGATG | 2 cut(s) | 556, 961 |
| Fsp4HI | GCNGC | 4 cut(s) | 387, 401, 606, 861 |
| FspBI | CTAG | 2 cut(s) | 447, 965 |
| GluI | GCNGC | 4 cut(s) | 387, 401, 606, 861 |
| GsaI | CCCAGC | 1 cut(s) | 339 |
| GsuI | CTGGAG | 1 cut(s) | 645 |
| HaeIII | GGCC | 1 cut(s) | 259 |
| HapII | CCGG | 1 cut(s) | 642 |
| Hin1II | CATG | 3 cut(s) | 334, 601, 844 |
| HincII | GTYRAC | 1 cut(s) | 19 |
| HindII | GTYRAC | 1 cut(s) | 19 |
| HinfI | GANTC | 2 cut(s) | 508, 901 |
| HpaII | CCGG | 1 cut(s) | 642 |
| HphI | GGTGA | 1 cut(s) | 301 |
| Hpy166II | GTNNAC | 4 cut(s) | 13, 19, 407, 884 |
| Hpy188I | TCNGA | 2 cut(s) | 694, 743 |
| Hpy188III | TCNNGA | 3 cut(s) | 170, 236, 455 |
| Hpy8I | GTNNAC | 4 cut(s) | 13, 19, 407, 884 |
| HpyAV | CCTTC | 3 cut(s) | 195, 263, 875 |
| HpyCH4III | ACNGT | 2 cut(s) | 515, 571 |
| HpyCH4IV | ACGT | 5 cut(s) | 15, 734, 752, 757, 1021 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 104, 400, 409, 857 |
| HpySE526I | ACGT | 5 cut(s) | 15, 734, 752, 757, 1021 |
| Hsp92II | CATG | 3 cut(s) | 334, 601, 844 |
| Kzo9I | GATC | 1 cut(s) | 270 |
| LpnPI | CCDG | 8 cut(s) | 183, 321, 366, 393, 609, 636, 655, 942 |
| Lsp1109I | GCAGC | 4 cut(s) | 398, 412, 592, 847 |
| LweI | GCATC | 3 cut(s) | 85, 685, 939 |
| MaeI | CTAG | 2 cut(s) | 447, 965 |
| MaeII | ACGT | 5 cut(s) | 15, 734, 752, 757, 1021 |
| MaeIII | GTNAC | 4 cut(s) | 509, 753, 758, 931 |
| MalI | GATC | 1 cut(s) | 272 |
| MbiI | CCGCTC | 1 cut(s) | 286 |
| MboI | GATC | 1 cut(s) | 270 |
| MboII | GAAGA | 6 cut(s) | 16, 62, 103, 705, 779, 817 |
| MflI | RGATCY | 1 cut(s) | 270 |
| MhlI | GDGCHC | 1 cut(s) | 583 |
| MluCI | AATT | 9 cut(s) | 100, 618, 668, 687, 744, 804, 870, 972, 979 |
| MlyI | GAGTC | 1 cut(s) | 517 |
| MmeI | TCCRAC | 1 cut(s) | 929 |
| MnlI | CCTC | 6 cut(s) | 190, 453, 456, 523, 620, 971 |
| Mph1103I | ATGCAT | 1 cut(s) | 78 |
| MseI | TTAA | 3 cut(s) | 35, 369, 1005 |
| MslI | CAYNNNNRTG | 1 cut(s) | 797 |
| MspI | CCGG | 1 cut(s) | 642 |
| MspR9I | CCNGG | 2 cut(s) | 381, 624 |
| Mva1269I | GAATGC | 1 cut(s) | 653 |
| MvaI | CCWGG | 2 cut(s) | 381, 624 |
| MvnI | CGCG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 104, 400, 409, 857 |
| NdeII | GATC | 1 cut(s) | 270 |
| NlaIII | CATG | 3 cut(s) | 334, 601, 844 |
| NlaIV | GGNNCC | 1 cut(s) | 260 |
| NmuCI | GTSAC | 3 cut(s) | 509, 753, 931 |
| NsiI | ATGCAT | 1 cut(s) | 78 |
| NspV | TTCGAA | 1 cut(s) | 114 |
| PctI | GAATGC | 1 cut(s) | 653 |
| PfeI | GAWTC | 1 cut(s) | 901 |
| PfoI | TCCNGGA | 1 cut(s) | 622 |
| PkrI | GCNGC | 4 cut(s) | 388, 402, 607, 862 |
| PleI | GAGTC | 1 cut(s) | 516 |
| PpsI | GAGTC | 1 cut(s) | 516 |
| PsiI | TTATAA | 2 cut(s) | 249, 686 |
| Psp1406I | AACGTT | 1 cut(s) | 1021 |
| Psp6I | CCWGG | 2 cut(s) | 379, 622 |
| PspFI | CCCAGC | 1 cut(s) | 335 |
| PspGI | CCWGG | 2 cut(s) | 379, 622 |
| PspN4I | GGNNCC | 1 cut(s) | 260 |
| PspPI | GGNCC | 1 cut(s) | 258 |
| PsuI | RGATCY | 1 cut(s) | 270 |
| RsaI | GTAC | 2 cut(s) | 419, 441 |
| RsaNI | GTAC | 2 cut(s) | 418, 440 |
| RseI | CAYNNNNRTG | 1 cut(s) | 797 |
| SaqAI | TTAA | 3 cut(s) | 35, 369, 1005 |
| SatI | GCNGC | 4 cut(s) | 387, 401, 606, 861 |
| Sau3AI | GATC | 1 cut(s) | 270 |
| Sau96I | GGNCC | 1 cut(s) | 258 |
| SchI | GAGTC | 1 cut(s) | 517 |
| ScrFI | CCNGG | 2 cut(s) | 381, 624 |
| SduI | GDGCHC | 1 cut(s) | 583 |
| SfaNI | GCATC | 3 cut(s) | 85, 685, 939 |
| SfuI | TTCGAA | 1 cut(s) | 114 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 797 |
| SmlI | CTYRAG | 1 cut(s) | 455 |
| SmoI | CTYRAG | 1 cut(s) | 455 |
| Sse9I | AATT | 9 cut(s) | 100, 618, 668, 687, 744, 804, 870, 972, 979 |
| SsiI | CCGC | 2 cut(s) | 286, 651 |
| SspI | AATATT | 1 cut(s) | 1002 |
| SspMI | CTAG | 2 cut(s) | 447, 965 |
| StyD4I | CCNGG | 2 cut(s) | 379, 622 |
| StyI | CCWWGG | 2 cut(s) | 446, 488 |
| TaaI | ACNGT | 2 cut(s) | 515, 571 |
| TaiI | ACGT | 5 cut(s) | 18, 737, 755, 760, 1024 |
| TaqI | TCGA | 3 cut(s) | 114, 225, 660 |
| TasI | AATT | 9 cut(s) | 100, 618, 668, 687, 744, 804, 870, 972, 979 |
| TfiI | GAWTC | 1 cut(s) | 901 |
| Tru1I | TTAA | 3 cut(s) | 35, 369, 1005 |
| Tru9I | TTAA | 3 cut(s) | 35, 369, 1005 |
| TscAI | CASTG | 3 cut(s) | 100, 520, 574 |
| TseFI | GTSAC | 3 cut(s) | 509, 753, 931 |
| TseI | GCWGC | 4 cut(s) | 386, 400, 605, 860 |
| Tsp45I | GTSAC | 3 cut(s) | 509, 753, 931 |
| TspDTI | ATGAA | 5 cut(s) | 17, 489, 560, 646, 678 |
| TspRI | CASTG | 3 cut(s) | 100, 520, 574 |
| XapI | RAATTY | 1 cut(s) | 744 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 328 |
| XmaJI | CCTAGG | 1 cut(s) | 446 |
| XspI | CTAG | 2 cut(s) | 447, 965 |
| Zsp2I | ATGCAT | 1 cut(s) | 78 |