protein ubiquitination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 273, 602, 850 |
| AclWI | GGATC | 1 cut(s) | 509 |
| AcuI | CTGAAG | 2 cut(s) | 780, 858 |
| AfaI | GTAC | 1 cut(s) | 637 |
| AflIII | ACRYGT | 2 cut(s) | 187, 258 |
| AgsI | TTSAA | 3 cut(s) | 493, 737, 953 |
| AhlI | ACTAGT | 1 cut(s) | 34 |
| AjiI | CACGTC | 1 cut(s) | 825 |
| AjnI | CCWGG | 1 cut(s) | 691 |
| AluBI | AGCT | 1 cut(s) | 161 |
| AluI | AGCT | 1 cut(s) | 161 |
| Alw21I | GWGCWC | 1 cut(s) | 652 |
| AlwI | GGATC | 1 cut(s) | 509 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 692 |
| AoxI | GGCC | 2 cut(s) | 250, 880 |
| ApeKI | GCWGC | 5 cut(s) | 173, 458, 674, 677, 1021 |
| AspS9I | GGNCC | 2 cut(s) | 250, 1064 |
| AsuC2I | CCSGG | 1 cut(s) | 1068 |
| AsuHPI | GGTGA | 3 cut(s) | 278, 652, 880 |
| AvaII | GGWCC | 1 cut(s) | 1064 |
| BaeGI | GKGCMC | 1 cut(s) | 937 |
| BbsI | GAAGAC | 1 cut(s) | 710 |
| Bbv12I | GWGCWC | 1 cut(s) | 652 |
| BbvCI | CCTCAGC | 1 cut(s) | 427 |
| BbvI | GCAGC | 5 cut(s) | 185, 470, 661, 664, 1008 |
| BccI | CCATC | 1 cut(s) | 671 |
| BciT130I | CCWGG | 1 cut(s) | 693 |
| BcnI | CCSGG | 1 cut(s) | 1068 |
| BcuI | ACTAGT | 1 cut(s) | 34 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BisI | GCNGC | 6 cut(s) | 174, 273, 459, 675, 678, 1022 |
| BlsI | GCNGC | 6 cut(s) | 175, 274, 460, 676, 679, 1023 |
| Bme1390I | CCNGG | 2 cut(s) | 693, 1068 |
| Bme18I | GGWCC | 1 cut(s) | 1064 |
| BmgBI | CACGTC | 1 cut(s) | 825 |
| BmgT120I | GGNCC | 2 cut(s) | 250, 1064 |
| BmiI | GGNNCC | 1 cut(s) | 1085 |
| BmrFI | CCNGG | 2 cut(s) | 693, 1068 |
| BmsI | GCATC | 1 cut(s) | 757 |
| BpiI | GAAGAC | 1 cut(s) | 710 |
| Bpu10I | CCTNAGC | 1 cut(s) | 427 |
| BpuMI | CCSGG | 1 cut(s) | 1068 |
| Bsa29I | ATCGAT | 1 cut(s) | 965 |
| BsaAI | YACGTR | 1 cut(s) | 1059 |
| BsaJI | CCNNGG | 3 cut(s) | 28, 519, 1067 |
| Bse1I | ACTGG | 2 cut(s) | 993, 1001 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseBI | CCWGG | 1 cut(s) | 693 |
| BseCI | ATCGAT | 1 cut(s) | 965 |
| BseDI | CCNNGG | 3 cut(s) | 28, 519, 1067 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 441 |
| BseNI | ACTGG | 2 cut(s) | 993, 1001 |
| BseSI | GKGCMC | 1 cut(s) | 937 |
| BseXI | GCAGC | 5 cut(s) | 185, 470, 661, 664, 1008 |
| BsgI | GTGCAG | 1 cut(s) | 477 |
| BshFI | GGCC | 2 cut(s) | 252, 882 |
| BshVI | ATCGAT | 1 cut(s) | 965 |
| BsiHKAI | GWGCWC | 1 cut(s) | 652 |
| BsiSI | CCGG | 1 cut(s) | 1067 |
| BsnI | GGCC | 2 cut(s) | 252, 882 |
| Bsp1286I | GDGCHC | 2 cut(s) | 652, 937 |
| Bsp1407I | TGTACA | 1 cut(s) | 635 |
| Bsp143I | GATC | 1 cut(s) | 514 |
| BspACI | CCGC | 3 cut(s) | 273, 602, 850 |
| BspANI | GGCC | 2 cut(s) | 252, 882 |
| BspCNI | CTCAG | 1 cut(s) | 440 |
| BspDI | ATCGAT | 1 cut(s) | 965 |
| BspHI | TCATGA | 1 cut(s) | 39 |
| BspLI | GGNNCC | 1 cut(s) | 1085 |
| BspPI | GGATC | 1 cut(s) | 509 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrGI | TGTACA | 1 cut(s) | 635 |
| BsrI | ACTGG | 2 cut(s) | 993, 1001 |
| BssECI | CCNNGG | 3 cut(s) | 28, 519, 1067 |
| BssMI | GATC | 1 cut(s) | 514 |
| BssT1I | CCWWGG | 1 cut(s) | 519 |
| Bst2UI | CCWGG | 1 cut(s) | 693 |
| Bst4CI | ACNGT | 4 cut(s) | 111, 412, 640, 688 |
| BstAUI | TGTACA | 1 cut(s) | 635 |
| BstBAI | YACGTR | 1 cut(s) | 1059 |
| BstC8I | GCNNGC | 1 cut(s) | 990 |
| BstDEI | CTNAG | 1 cut(s) | 427 |
| BstKTI | GATC | 1 cut(s) | 517 |
| BstMBI | GATC | 1 cut(s) | 514 |
| BstNI | CCWGG | 1 cut(s) | 693 |
| BstNSI | RCATGY | 3 cut(s) | 11, 191, 345 |
| BstSCI | CCNGG | 2 cut(s) | 691, 1066 |
| BstSLI | GKGCMC | 1 cut(s) | 937 |
| BstSNI | TACGTA | 1 cut(s) | 1059 |
| BstV1I | GCAGC | 5 cut(s) | 185, 470, 661, 664, 1008 |
| BstV2I | GAAGAC | 1 cut(s) | 710 |
| BstX2I | RGATCY | 1 cut(s) | 514 |
| BstYI | RGATCY | 1 cut(s) | 514 |
| Bsu15I | ATCGAT | 1 cut(s) | 965 |
| BsuRI | GGCC | 2 cut(s) | 252, 882 |
| BsuTUI | ATCGAT | 1 cut(s) | 965 |
| BtrI | CACGTC | 1 cut(s) | 825 |
| BtsIMutI | CAGTG | 1 cut(s) | 1000 |
| Cac8I | GCNNGC | 1 cut(s) | 990 |
| CaiI | CAGNNNCTG | 1 cut(s) | 692 |
| CciI | TCATGA | 1 cut(s) | 39 |
| Cfr13I | GGNCC | 2 cut(s) | 250, 1064 |
| ClaI | ATCGAT | 1 cut(s) | 965 |
| CseI | GACGC | 1 cut(s) | 420 |
| Csp6I | GTAC | 1 cut(s) | 636 |
| CviJI | RGCY | 5 cut(s) | 161, 252, 461, 882, 1021 |
| CviKI_1 | RGCY | 5 cut(s) | 161, 252, 461, 882, 1021 |
| CviQI | GTAC | 1 cut(s) | 636 |
| DdeI | CTNAG | 1 cut(s) | 427 |
| DpnI | GATC | 1 cut(s) | 516 |
| DpnII | GATC | 1 cut(s) | 514 |
| EciI | GGCGGA | 1 cut(s) | 617 |
| Eco105I | TACGTA | 1 cut(s) | 1059 |
| Eco130I | CCWWGG | 1 cut(s) | 519 |
| Eco147I | AGGCCT | 1 cut(s) | 882 |
| Eco47I | GGWCC | 1 cut(s) | 1064 |
| Eco57I | CTGAAG | 2 cut(s) | 780, 858 |
| EcoRII | CCWGG | 1 cut(s) | 691 |
| EcoT14I | CCWWGG | 1 cut(s) | 519 |
| ErhI | CCWWGG | 1 cut(s) | 519 |
| FauNDI | CATATG | 2 cut(s) | 147, 1016 |
| Fnu4HI | GCNGC | 6 cut(s) | 174, 273, 459, 675, 678, 1022 |
| Fsp4HI | GCNGC | 6 cut(s) | 174, 273, 459, 675, 678, 1022 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GluI | GCNGC | 6 cut(s) | 174, 273, 459, 675, 678, 1022 |
| HaeIII | GGCC | 2 cut(s) | 252, 882 |
| HapII | CCGG | 1 cut(s) | 1067 |
| HgaI | GACGC | 1 cut(s) | 420 |
| HinfI | GANTC | 5 cut(s) | 43, 63, 102, 530, 817 |
| HpaII | CCGG | 1 cut(s) | 1067 |
| HphI | GGTGA | 3 cut(s) | 278, 652, 880 |
| Hpy166II | GTNNAC | 3 cut(s) | 298, 378, 538 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 766, 838 |
| Hpy188III | TCNNGA | 1 cut(s) | 40 |
| Hpy8I | GTNNAC | 3 cut(s) | 298, 378, 538 |
| Hpy99I | CGWCG | 1 cut(s) | 285 |
| HpyAV | CCTTC | 2 cut(s) | 610, 947 |
| HpyCH4III | ACNGT | 4 cut(s) | 111, 412, 640, 688 |
| HpyCH4IV | ACGT | 5 cut(s) | 258, 280, 540, 824, 1058 |
| HpyCH4V | TGCA | 8 cut(s) | 11, 345, 458, 466, 472, 680, 770, 1024 |
| HpyF3I | CTNAG | 1 cut(s) | 427 |
| HpySE526I | ACGT | 5 cut(s) | 258, 280, 540, 824, 1058 |
| Kzo9I | GATC | 1 cut(s) | 514 |
| LpnPI | CCDG | 8 cut(s) | 266, 476, 678, 705, 735, 1006, 1014, 1080 |
| Lsp1109I | GCAGC | 5 cut(s) | 185, 470, 661, 664, 1008 |
| LweI | GCATC | 1 cut(s) | 757 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeII | ACGT | 5 cut(s) | 258, 280, 540, 824, 1058 |
| MaeIII | GTNAC | 7 cut(s) | 284, 324, 402, 432, 658, 825, 1003 |
| MalI | GATC | 1 cut(s) | 516 |
| MboI | GATC | 1 cut(s) | 514 |
| MboII | GAAGA | 4 cut(s) | 347, 710, 777, 851 |
| MflI | RGATCY | 1 cut(s) | 514 |
| MhlI | GDGCHC | 2 cut(s) | 652, 937 |
| MluCI | AATT | 7 cut(s) | 86, 221, 385, 420, 732, 1025, 1094 |
| MlyI | GAGTC | 1 cut(s) | 111 |
| MnlI | CCTC | 9 cut(s) | 23, 129, 176, 436, 446, 490, 592, 902, 1018 |
| MseI | TTAA | 2 cut(s) | 213, 731 |
| MslI | CAYNNNNRTG | 3 cut(s) | 665, 869, 914 |
| MspA1I | CMGCKG | 1 cut(s) | 275 |
| MspI | CCGG | 1 cut(s) | 1067 |
| MspR9I | CCNGG | 2 cut(s) | 693, 1068 |
| MvaI | CCWGG | 1 cut(s) | 693 |
| NciI | CCSGG | 1 cut(s) | 1068 |
| NdeI | CATATG | 2 cut(s) | 147, 1016 |
| NdeII | GATC | 1 cut(s) | 514 |
| NlaIV | GGNNCC | 1 cut(s) | 1085 |
| NmuCI | GTSAC | 4 cut(s) | 284, 432, 658, 825 |
| NspI | RCATGY | 3 cut(s) | 11, 191, 345 |
| PagI | TCATGA | 1 cut(s) | 39 |
| PceI | AGGCCT | 1 cut(s) | 882 |
| PciI | ACATGT | 1 cut(s) | 187 |
| PfeI | GAWTC | 4 cut(s) | 43, 63, 530, 817 |
| PkrI | GCNGC | 6 cut(s) | 175, 274, 460, 676, 679, 1023 |
| PleI | GAGTC | 1 cut(s) | 110 |
| PpsI | GAGTC | 1 cut(s) | 110 |
| Ppu21I | YACGTR | 1 cut(s) | 1059 |
| PscI | ACATGT | 1 cut(s) | 187 |
| Psp6I | CCWGG | 1 cut(s) | 691 |
| PspGI | CCWGG | 1 cut(s) | 691 |
| PspN4I | GGNNCC | 1 cut(s) | 1085 |
| PspPI | GGNCC | 2 cut(s) | 250, 1064 |
| PstNI | CAGNNNCTG | 1 cut(s) | 692 |
| PsuI | RGATCY | 1 cut(s) | 514 |
| RsaI | GTAC | 1 cut(s) | 637 |
| RsaNI | GTAC | 1 cut(s) | 636 |
| RseI | CAYNNNNRTG | 3 cut(s) | 665, 869, 914 |
| SaqAI | TTAA | 2 cut(s) | 213, 731 |
| SatI | GCNGC | 6 cut(s) | 174, 273, 459, 675, 678, 1022 |
| Sau3AI | GATC | 1 cut(s) | 514 |
| Sau96I | GGNCC | 2 cut(s) | 250, 1064 |
| SchI | GAGTC | 1 cut(s) | 111 |
| ScrFI | CCNGG | 2 cut(s) | 693, 1068 |
| SduI | GDGCHC | 2 cut(s) | 652, 937 |
| SfaNI | GCATC | 1 cut(s) | 757 |
| SinI | GGWCC | 1 cut(s) | 1064 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 665, 869, 914 |
| SnaBI | TACGTA | 1 cut(s) | 1059 |
| SpeI | ACTAGT | 1 cut(s) | 34 |
| Sse9I | AATT | 7 cut(s) | 86, 221, 385, 420, 732, 1025, 1094 |
| SseBI | AGGCCT | 1 cut(s) | 882 |
| SsiI | CCGC | 3 cut(s) | 273, 602, 850 |
| SspI | AATATT | 1 cut(s) | 753 |
| SspMI | CTAG | 1 cut(s) | 35 |
| StuI | AGGCCT | 1 cut(s) | 882 |
| StyD4I | CCNGG | 2 cut(s) | 691, 1066 |
| StyI | CCWWGG | 1 cut(s) | 519 |
| TaaI | ACNGT | 4 cut(s) | 111, 412, 640, 688 |
| TaiI | ACGT | 5 cut(s) | 261, 283, 543, 827, 1061 |
| TaqI | TCGA | 2 cut(s) | 451, 965 |
| TasI | AATT | 7 cut(s) | 86, 221, 385, 420, 732, 1025, 1094 |
| TatI | WGTACW | 1 cut(s) | 635 |
| TauI | GCSGC | 1 cut(s) | 275 |
| TfiI | GAWTC | 4 cut(s) | 43, 63, 530, 817 |
| Tru1I | TTAA | 2 cut(s) | 213, 731 |
| Tru9I | TTAA | 2 cut(s) | 213, 731 |
| TscAI | CASTG | 1 cut(s) | 1000 |
| TseFI | GTSAC | 4 cut(s) | 284, 432, 658, 825 |
| TseI | GCWGC | 5 cut(s) | 173, 458, 674, 677, 1021 |
| Tsp45I | GTSAC | 4 cut(s) | 284, 432, 658, 825 |
| TspDTI | ATGAA | 5 cut(s) | 56, 98, 600, 629, 1003 |
| TspGWI | ACGGA | 1 cut(s) | 395 |
| TspRI | CASTG | 1 cut(s) | 1000 |
| VpaK11BI | GGWCC | 1 cut(s) | 1064 |
| XceI | RCATGY | 3 cut(s) | 11, 191, 345 |
| XspI | CTAG | 1 cut(s) | 35 |