FvH4_6g44660

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000027
Physical Location & Seq
Reverse (-)
34390582 .. 34394301
3720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44660.t1

Sequence Viewer

Length: 2280 bp
ATGGCAGCCACAGTAGTCCCTAGTGTAATGATTAATCTAAAAGCTCTCGACAAAAACAACTATAAGCACTGGAGCTTTCGGGTGAAAACATACTTAGTGGCTGAAGATTTGTGGGACGTTGTCGAAGACACAAACGACCCTCCAAAACTAGAAGACGGGAAAGCTATATTCGTGGCTTGGCGGAAAAACAATGCTAGGGCTTTGCATGCTATCACCATATCTTGCGGGGAGGATGCTGAGTCCGCCATTAGCGATATAGAGATGGCGAAAGATGCCTGGAACACTTTGGCAGAAAAGTTCAAGCCTCCTGAAATTATAGAAACTCAAGATTTCAATTCTGAAGTGGACTCCGGCTCAGATGATGGTAATGCTGACTCGAAAATAGATGCGGTTGAAGCATATGACCATGAGACCTATGCATCTTTCTTCAATAAGGTGGCCACAGCCATGGGGGACGGGAAATGGGAGGATGTAAAAGAGTTTATGAAACAACATCCAGAGGCAGTAAGAGCAAAACATGGGCGCTGGGGCTTGACAGTTTTTCACAAAGTAGTCCGGTATCAGGACGTGAGAGGTGTAAAAGAATTGCTGCCGTTTATGAGAAAGAAAGATTGGGGAATACTAGACAATGAAGGACGTACTGCTTTTTCTCTGGTTATAGAAGATGGGCATACAGATGATGCGATCGAAATCGTCAAGTGCATAGTTGAGAAGAACAAAAAATTACTCCTTCGTGTTGTCCATCCTTCCGCCAAAACTGTTCCACTCGTGTATGCTCTGAGTTTGGACAAACCAAAAATGGCCCGTTATCTTTATTCTGTTACTCCACTCGAGAAGCTCAAGAGTAGAGACGCCGCTGAGCTTGTTTCCACGGGTTTGCGATTGAAACATTTAGATATTTCGTTGGACTTACTACGGCGTTTTCCAAACTTGGCCATTGCTGAAGATCACTCTGGTCAATCTCCATTAAATGAATTGGCTAGTACGCGTGCTGGATTATTCTCAGATGCTAGCAAGCTCGGAATGCGGAAACGATTGATTTATAGATGTATGCCTACACCGACACCTACACCCATTACTCGTGAAGTTTCTATAGATGTTCAAAACGAAGAGAAAGATCAAGGCAATCGGAAGCATCACATTGGTAGAGTTACATGTTCCTATCGGCGACTAGTTGTGAATCTCCGTCGCCTTTTCGGAATCGATGACATATATGAAATGAAATTGCTCAACGTCCAGGCCATCGAAATTCTGAAATGCATGTGTGCAGTTTTAAAGGAAGATAATTACAAAAATATGCAACACAAAGTTGTCGTAAAAGCACTCTTCCAATCAGTAGAACGAGGACATGCTCAATTCATCGCCAAAATAATATGGGACAACTGGTTTAATCCAATAAACTGGTTTCTTACAGTCACTAATGAACATGACAAGACCGTATTTCAATTAGCTGCTGACCATCGTCAAGGGGAAATCTTTGCTTTGATAACATGCTTTGATTCAAAAGAAAGACAAGAAATTATAGGTAGAAAAGATAAGTCTGGGAATAACCTGCTGCATCTGTTAGGAAAGTTGACCCCAGTAGCAAAGATTGCTCATATTCGAGGTGCAGCTTTGCAAATGCAGAACGAACTACAGTGGTTCAAGGGCGTGGAGGGGTTGGCAAATCCCAAGGATCTTAATTGTATAAATTCAGAGGGTCGCACACCCCGCGAGGAATTTACTATGAACCACAAAGATCTGGTGAAGGAAGGAGCATCGTCAATGAAAGAAACTGCAACTTCTTCTTCGGCACTTGTAGCTGCTCTTATCATTACCATTATGTTCGCTGCAGCTGTGACAGTTCCTGGTGGAATAAATGAGGACACAGGTATTCCCATATACTTGCACACCAAGGCATTTCAGACTTTTATAGTTGCAGATGTTATATCGCTATGCTCTGCCACAACTTCAGTAATGATATTTCTAGGGATCCTTACATCACGTTTTGCTGAAGAAGATTTTCTCACATCCTTACCCACAAAATTGATACTCGGGTTTCTTACCCTTTTTCTATCTATCGGGGCCATGATGATTGCCTTTTCTTCTGTCATTTTCATTATGCTCCCTGAAACATCTTCTATTGTTATCCCATCTATTGTACTCGCTACAGCTCCGATTGCCTCATTCCTACGGATGCAATTTCCGTTCCTTCTTGATATCATTATTTCTACTTATGGATTCCCAATAAGAGTATATTTAACTCGGATTAGATTGTTACGGTGGGCTAGAACTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 DUF4219

Protein Analysis

760

Amino Acids

85.47

Weight (kDa)

7.95

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4219 PF13961 16 - 42 1.1e-09 Domain of unknown function (DUF4219)
Retrotran_gag_2 PF14223 29 - 101 2.2e-08 gag-polypeptide of LTR copia-type
PGG PF13962 591 - 700 2.3e-21 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18670 AT3G18670 AT3G54065
fragaria_vesca FvH4_1g26570 FvH4_1g26570 FvH4_5g19270 FvH4_5g19273 FvH4_5g35840 FvH4_5g36340 FvH4_5g36630 FvH4_5g37181 FvH4_5g37182 FvH4_5g37185 FvH4_5g37240 FvH4_5g37260 FvH4_6g21440 FvH4_6g44571 FvH4_6g44572 FvH4_6g44610 FvH4_6g44620 FvH4_6g44650 FvH4_6g44660 FvH4_6g45151 FvH4_6g45152 FvH4_6g45152 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45153 FvH4_6g45154 FvH4_6g51440 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090 FvH4_7g08090
malus_domestica MD00G1010300.v1.1 MD00G1010400.v1.1 MD00G1010500.v1.1 MD00G1011000.v1.1 MD00G1011200.v1.1 MD00G1011500.v1.1 MD00G1011900.v1.1 MD03G1133900.v1.1 MD03G1134100.v1.1 MD09G1086300.v1.1 MD09G1086500.v1.1 MD09G1086900.v1.1 MD09G1087000.v1.1 MD09G1088000.v1.1 MD09G1088100.v1.1 MD09G1088200.v1.1 MD09G1088300.v1.1 MD09G1089000.v1.1 MD09G1089300.v1.1 MD09G1133800.v1.1 MD16G1219400.v1.1 MD17G1027900.v1.1 MD17G1028400.v1.1 MD17G1028600.v1.1 MD17G1028700.v1.1 MD17G1028900.v1.1 MD17G1029000.v1.1 MD17G1029100.v1.1 MD17G1029200.v1.1 MD17G1075400.v1.1 MD17G1076000.v1.1 MD17G1077000.v1.1 MD17G1077100.v1.1 MD17G1077800.v1.1 MD17G1078000.v1.1 MD17G1078100.v1.1 MD17G1078300.v1.1 MD17G1100900.v1.1 MD17G1101100.v1.1 MD17G1101400.v1.1 MD17G1104200.v1.1 MD17G1104500.v1.1 MD17G1121300.v1.1 MD17G1121600.v1.1 MD17G1121900.v1.1 MD17G1122700.v1.1 MD17G1218800.v1.1
prunus_persica Prupe.2G033800_v2.0.a1 Prupe.2G033900_v2.0.a1 Prupe.2G080300_v2.0.a1 Prupe.2G080700_v2.0.a1 Prupe.2G080900_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081100_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081200_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G081700_v2.0.a1 Prupe.2G082000_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082100_v2.0.a1 Prupe.2G082200_v2.0.a1 Prupe.2G082300_v2.0.a1 Prupe.2G082700_v2.0.a1 Prupe.2G082800_v2.0.a1 Prupe.2G082900_v2.0.a1 Prupe.3G235600_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236300_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236600_v2.0.a1 Prupe.3G236800_v2.0.a1 Prupe.3G237000_v2.0.a1 Prupe.3G237100_v2.0.a1 Prupe.3G237300_v2.0.a1 Prupe.3G237400_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.3G237500_v2.0.a1 Prupe.4G282500_v2.0.a1 Prupe.4G282500_v2.0.a1
pyrus_communis pycom03g08990 pycom03g09000 pycom09g01180 pycom09g01190 pycom09g01220 pycom09g01230 pycom09g01360 pycom09g01370 pycom09g01380 pycom09g01410 pycom09g05500 pycom11g10280 pycom11g10290 pycom11g10310 pycom16g18270 pycom16g18280 pycom17g02280 pycom17g02290 pycom17g02300 pycom17g02360 pycom17g02390 pycom17g02410 pycom17g02440 pycom17g02460 pycom17g02470 pycom17g02480 pycom17g02510 pycom17g02530 pycom17g02540 pycom17g02550 pycom17g02560 pycom17g02570 pycom17g02580 pycom17g02630 pycom17g02640 pycom17g04970 pycom17g04980 pycom17g05010 pycom17g07090 pycom17g07620 pycom17g07630 pycom17g07640 pycom17g07650 pycom17g07660 pycom17g07740 pycom17g07760 pycom17g07770 pycom17g09580 pycom17g11170 pycom17g11200 pycom17g11220 pycom17g11240 pycom17g11250 pycom17g11300 pycom17g11340 pycom17g11380 pycom17g11440
rosa_chinensis RchiOBHm_Chr1g0332901 RchiOBHm_Chr1g0338981 RchiOBHm_Chr1g0338991 RchiOBHm_Chr1g0341201 RchiOBHm_Chr1g0341211 RchiOBHm_Chr1g0342721 RchiOBHm_Chr1g0343191 RchiOBHm_Chr2g0146761 RchiOBHm_Chr2g0161791 RchiOBHm_Chr2g0161801 RchiOBHm_Chr2g0161841 RchiOBHm_Chr2g0162041 RchiOBHm_Chr2g0162651 RchiOBHm_Chr2g0162691 RchiOBHm_Chr2g0162701 RchiOBHm_Chr2g0162711 RchiOBHm_Chr2g0162721 RchiOBHm_Chr2g0162811 RchiOBHm_Chr2g0162831 RchiOBHm_Chr2g0162841 RchiOBHm_Chr4g0416381 RchiOBHm_Chr4g0416391 RchiOBHm_Chr5g0075981 RchiOBHm_Chr6g0276101 RchiOBHm_Chr7g0214581 RchiOBHm_Chr7g0214631 RchiOBHm_Chr7g0214651 RchiOBHm_Chr7g0214721 RchiOBHm_Chr7g0223161 RchiOBHm_Chr7g0230661 RchiOBHm_Chr7g0230751 RchiOBHm_Chr7g0230781 RchiOBHm_Chr7g0234581 RchiOBHm_Chr7g0234601 RchiOBHm_Chr7g0237561 RchiOBHm_Chr7g0237571 RchiOBHm_Chr7g0238781 RchiOBHm_Chr7g0238811 RchiOBHm_Chr7g0242161 RchiOBHm_Chr7g0242401 RchiOBHm_Chr7g0242451 RchiOBHm_Chr7g0242921 RchiOBHm_Chr7g0242981 RchiOBHm_Chr7g0243111 RchiOBHm_Chr7g0243251 RchiOBHm_Chr7g0243331
rosa_laevigata RLG00000000803 RLG00000000807 RLG00000000809 RLG00000000811 RLG00000000814 RLG00000000854 RLG00000000859 RLG00000000864 RLG00000000994 RLG00000000995 RLG00000001458 RLG00000001461 RLG00000001474 RLG00000001476 RLG00000002729 RLG00000002730 RLG00000003505 RLG00000008871 RLG00000008873 RLG00000018513 RLG00000021300 RLG00000021303 RLG00000021318 RLG00000021356 RLG00000021357 RLG00000029070 RLG00000029071 RLG00000029171 RLG00000029189 RLG00000029190 RLG00000029640 RLG00000034635
rosa_multiflora Rmu_co8149086.1_g000001 Rmu_co8460577.1_g000001 Rmu_sc0000429.1_g000062 Rmu_sc0000429.1_g000071 Rmu_sc0000429.1_g000081 Rmu_sc0000863.1_g000020 Rmu_sc0001488.1_g000011 Rmu_sc0001545.1_g000007 Rmu_sc0001849.1_g000068 Rmu_sc0001993.1_g000003 Rmu_sc0002222.1_g000002 Rmu_sc0002308.1_g000053 Rmu_sc0002308.1_g000069 Rmu_sc0002480.1_g000007 Rmu_sc0003179.1_g000041 Rmu_sc0004213.1_g000011 Rmu_sc0007101.1_g000012 Rmu_sc0008565.1_g000011 Rmu_sc0009298.1_g000003 Rmu_sc0010407.1_g000009 Rmu_sc0010407.1_g000013 Rmu_sc0026966.1_g000004 Rmu_ssc0000152.1_g000012 Rmu_ssc0000152.1_g000014 Rmu_ssc0000295.1_g000021 Rmu_ssc0000295.1_g000026
rosa_roxburghii Rroxscaffold_1G00029600 Rroxscaffold_2G00087790 Rroxscaffold_2G00087800 Rroxscaffold_2G00088360 Rroxscaffold_2G00088500 Rroxscaffold_2G00088530 Rroxscaffold_2G00088590 Rroxscaffold_3G00221570 Rroxscaffold_3G00222190 Rroxscaffold_3G00222240 Rroxscaffold_3G00222880 Rroxscaffold_3G00222900 Rroxscaffold_3G00223990 Rroxscaffold_3G00229750 Rroxscaffold_3G00229760 Rroxscaffold_3G00245140 Rroxscaffold_3G00245150 Rroxscaffold_3G00245200 Rroxscaffold_3G00253520 Rroxscaffold_3G00253530 Rroxscaffold_4G00294500 Rroxscaffold_4G00311800 Rroxscaffold_4G00311830 Rroxscaffold_4G00311850 Rroxscaffold_4G00313180 Rroxscaffold_4G00313210 Rroxscaffold_4G00316270 Rroxscaffold_4G00317910 Rroxscaffold_4G00317920 Rroxscaffold_5G00349290 Rroxscaffold_5G00349300 Rroxscaffold_5G00349310 Rroxscaffold_5G00351950 Rroxscaffold_5G00351960 Rroxscaffold_5G00353390 Rroxscaffold_7G00192540
rosa_rugosa Rorug01G0102500 Rorug01G0102600 Rorug01G0146400.1 Rorug01G0146500.1 Rorug01G0159400.1 Rorug01G0159500.1 Rorug02G0491900 Rorug02G0492000 Rorug02G0492100 Rorug02G0492200 Rorug02G0492300 Rorug02G0492400 Rorug02G0492500 Rorug02G0492700 Rorug02G0498500 Rorug02G0498600 Rorug02G0498800 Rorug04G0006900 Rorug04G0053700 Rorug06G0002000 Rorug06G0002100 Rorug07G0304700 Rorug07G0304800 Rorug07G0304800 Rorug07G0304800 Rorug07G0305300 Rorug07G0305400 Rorug07G0305500 Rorug07G0305500 Rorug07G0318300 Rorug07G0318600 Rorug07G0323600
rosa_samantha Rh1AG128900 Rh1AG162500 Rh1AG163000 Rh1AG164000 Rh1AG164700 Rh1AG173200 Rh1AG173300 Rh1AG173800 Rh1BG098100 Rh1BG129800 Rh1BG130600 Rh1BG141300 Rh1BG141500 Rh1BG141600 Rh1CG122700 Rh1CG151900 Rh1CG152400 Rh1CG153100 Rh1CG153500 Rh1CG161400 Rh1CG161600 Rh1DG134200 Rh1DG173500 Rh1DG173700 Rh2AG558100 Rh2AG558500 Rh2AG560200 Rh2AG564700 Rh2AG564800 Rh2BG465600 Rh2BG571700 Rh2BG572000 Rh2BG573500 Rh2CG439800 Rh2CG541800 Rh2CG542100 Rh2CG542200 Rh2CG543800 Rh2CG547300 Rh2DG474700 Rh2DG580600 Rh2DG580900 Rh2DG581200 Rh2DG581700 Rh2DG581800 Rh2DG583500 Rh2DG587200 Rh2DG587300 Rh2DG587400 Rh4AG128900 Rh4AG203800 Rh4AG319900 Rh4AG320000 Rh4BG122200 Rh4BG201100 Rh4CG136000 Rh4DG122400 Rh4DG201100 Rh4DG323600 Rh6BG077000 Rh6DG206200 Rh7AG282300 Rh7AG282500 Rh7AG283400 Rh7AG358600 Rh7AG414500 Rh7AG415200 Rh7AG415500 Rh7AG461700 Rh7AG469300 Rh7AG477800 Rh7BG273900 Rh7BG274000 Rh7BG390400 Rh7BG390500 Rh7BG391500 Rh7BG391800 Rh7BG408300 Rh7BG432000 Rh7BG439200 Rh7BG449200 Rh7BG449900 Rh7BG450400 Rh7BG450500 Rh7CG220900 Rh7CG301600 Rh7CG302700 Rh7CG377000 Rh7CG433900 Rh7CG434200 Rh7CG478800 Rh7DG286200 Rh7DG354000 Rh7DG424600 Rh7DG448000 Rh7DG462800 Rh7DG462900
rosa_wichuraiana Rw0G003440 Rw0G011970 Rw0G017120 Rw0G017130 Rw0G017140 Rw0G018470 Rw0G018480 Rw0G020440 Rw1G010470 Rw2G046180 Rw2G046210 Rw2G046230 Rw2G046390 Rw2G046400 Rw2G046710 Rw2G046720 Rw2G046730 Rw3G025310 Rw4G010410 Rw4G017250 Rw6G018270 Rw7G018180 Rw7G024130 Rw7G024160 Rw7G024170 Rw7G034060 Rw7G034250 Rw7G034260 Rw7G034400 Rw7G034410 Rw7G038210 Rw7G039020 Rw7G039060 Rw7G039280 Rw7G039400 Rw7G039470 Rw7G039880 Rw7G039890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1560
AccII CGCG 2 cut(s) 988, 1713
AciI CCGC 8 cut(s) 181, 225, 243, 389, 750, 855, 1027, 1711
AclWI GGATC 3 cut(s) 1683, 1966, 1979
AcoI YGGCCR 2 cut(s) 438, 933
AcsI RAATTY 3 cut(s) 1248, 1690, 1718
AcuI CTGAAG 5 cut(s) 123, 360, 963, 1935, 2013
AcyI GRCGYC 1 cut(s) 852
AfaI GTAC 3 cut(s) 640, 985, 2142
AfiI CCNNNNNNNGG 1 cut(s) 562
AflIII ACRYGT 2 cut(s) 986, 1154
AgsI TTSAA 9 cut(s) 301, 334, 395, 430, 886, 1103, 1445, 1503, 1645
AhlI ACTAGT 1 cut(s) 1171
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 3 cut(s) 275, 1236, 1846
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
Alw26I GTCTC 2 cut(s) 404, 843
AlwI GGATC 3 cut(s) 1683, 1966, 1979
AlwNI CAGNNNCTG 1 cut(s) 1847
Ama87I CYCGRG 2 cut(s) 830, 2033
AoxI GGCC 5 cut(s) 438, 801, 933, 1239, 2064
ApeKI GCWGC 8 cut(s) 5, 589, 1451, 1555, 1610, 1802, 1829, 1832
ApoI RAATTY 3 cut(s) 1248, 1690, 1718
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 2001
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 802, 2064
AsuHPI GGTGA 3 cut(s) 94, 205, 1756
AsuNHI GCTAGC 1 cut(s) 1010
AvaI CYCGRG 2 cut(s) 830, 2033
BaeI ACNNNNGTAYC 2 cut(s) 2021, 2054
BalI TGGCCA 2 cut(s) 440, 935
BamHI GGATCC 1 cut(s) 1971
BauI CACGAG 2 cut(s) 767, 1080
BbsI GAAGAC 2 cut(s) 132, 159
BbvI GCAGC 8 cut(s) 17, 576, 1438, 1542, 1622, 1789, 1816, 1844
BccI CCATC 7 cut(s) 256, 356, 659, 750, 1250, 1467, 2140
BceAI ACGGC 2 cut(s) 577, 932
BciT130I CCWGG 3 cut(s) 277, 1238, 1848
BcoDI GTCTC 2 cut(s) 404, 843
BcuI ACTAGT 1 cut(s) 1171
BfaI CTAG 9 cut(s) 21, 149, 195, 623, 981, 1011, 1172, 1967, 2268
BfmI CTRYAG 4 cut(s) 1092, 1634, 1830, 2148
BfoI RGCGCY 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 1560
BglII AGATCT 1 cut(s) 1738
BisI GCNGC 9 cut(s) 6, 590, 855, 1452, 1556, 1611, 1803, 1830, 1833
BlpI GCTNAGC 1 cut(s) 858
BlsI GCNGC 9 cut(s) 7, 591, 856, 1453, 1557, 1612, 1804, 1831, 1834
Bme1390I CCNGG 3 cut(s) 277, 1238, 1848
BmeT110I CYCGRG 2 cut(s) 830, 2033
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 802, 2064
BmiI GGNNCC 2 cut(s) 1973, 2065
BmrFI CCNGG 3 cut(s) 277, 1238, 1848
BmrI ACTGGG 1 cut(s) 1574
BmtI GCTAGC 1 cut(s) 1014
BmuI ACTGGG 1 cut(s) 1574
BoxI GACNNNNGTC 1 cut(s) 1461
BpiI GAAGAC 2 cut(s) 132, 159
BpmI CTGGAG 1 cut(s) 91
Bpu1102I GCTNAGC 1 cut(s) 858
BpuEI CTTGAG 2 cut(s) 309, 824
Bsa29I ATCGAT 1 cut(s) 1203
BsaBI GATNNNNATC 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 852
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 4 cut(s) 447, 870, 1671, 1893
BsaWI WCCGGW 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 562
Bse1I ACTGG 4 cut(s) 74, 1388, 1406, 1580
Bse3DI GCAATG 1 cut(s) 936
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 3 cut(s) 277, 1238, 1848
BseCI ATCGAT 1 cut(s) 1203
BseDI CCNNGG 4 cut(s) 447, 870, 1671, 1893
BseGI GGATG 6 cut(s) 238, 475, 493, 742, 2009, 2181
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 1 cut(s) 562
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 5 cut(s) 228, 369, 770, 849, 1017
BseNI ACTGG 4 cut(s) 74, 1388, 1406, 1580
BseXI GCAGC 8 cut(s) 17, 576, 1438, 1542, 1622, 1789, 1816, 1844
BseYI CCCAGC 1 cut(s) 525
BsgI GTGCAG 2 cut(s) 1287, 1629
Bsh1236I CGCG 2 cut(s) 988, 1713
Bsh1285I CGRYCG 1 cut(s) 687
BshFI GGCC 5 cut(s) 440, 803, 935, 1241, 2066
BshVI ATCGAT 1 cut(s) 1203
BsiEI CGRYCG 1 cut(s) 687
BsiHKCI CYCGRG 2 cut(s) 830, 2033
BsiSI CCGG 2 cut(s) 351, 556
BslFI GGGAC 4 cut(s) 2, 128, 467, 1391
BslI CCNNNNNNNGG 1 cut(s) 562
BsmAI GTCTC 2 cut(s) 404, 843
BsmBI CGTCTC 1 cut(s) 843
BsmFI GGGAC 4 cut(s) 2, 128, 467, 1391
BsmI GAATGC 1 cut(s) 1029
BsnI GGCC 5 cut(s) 440, 803, 935, 1241, 2066
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 2 cut(s) 830, 2033
Bsp143I GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
Bsp1720I GCTNAGC 1 cut(s) 858
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 8 cut(s) 181, 225, 243, 389, 750, 855, 1027, 1711
BspANI GGCC 5 cut(s) 440, 803, 935, 1241, 2066
BspCNI CTCAG 5 cut(s) 229, 368, 771, 850, 1016
BspDI ATCGAT 1 cut(s) 1203
BspFNI CGCG 2 cut(s) 988, 1713
BspLI GGNNCC 2 cut(s) 1973, 2065
BspMAI CTGCAG 1 cut(s) 1834
BspMI ACCTGC 1 cut(s) 1560
BspOI GCTAGC 1 cut(s) 1014
BspPI GGATC 3 cut(s) 1683, 1966, 1979
BspTNI GGTCTC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 936
BsrI ACTGG 4 cut(s) 74, 1388, 1406, 1580
BssECI CCNNGG 4 cut(s) 447, 870, 1671, 1893
BssMI GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
BssNI GRCGYC 1 cut(s) 852
BssSI CACGAG 2 cut(s) 767, 1080
BssT1I CCWWGG 3 cut(s) 447, 1671, 1893
Bst2BI CACGAG 2 cut(s) 767, 1080
Bst2UI CCWGG 3 cut(s) 277, 1238, 1848
Bst4CI ACNGT 8 cut(s) 13, 538, 760, 1414, 1438, 1638, 1843, 2262
Bst6I CTCTTC 2 cut(s) 1104, 1331
BstACI GRCGYC 1 cut(s) 852
BstAPI GCANNNNNTGC 1 cut(s) 1592
BstC8I GCNNGC 4 cut(s) 207, 990, 1012, 1016
BstDEI CTNAG 6 cut(s) 94, 237, 355, 779, 858, 1003
BstDSI CCRYGG 2 cut(s) 447, 870
BstF5I GGATG 6 cut(s) 238, 475, 493, 742, 2009, 2181
BstFNI CGCG 2 cut(s) 988, 1713
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 6 cut(s) 687, 949, 1120, 1678, 1741, 1974
BstMAI GTCTC 2 cut(s) 404, 843
BstMBI GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
BstMCI CGRYCG 1 cut(s) 687
BstNI CCWGG 3 cut(s) 277, 1238, 1848
BstNSI RCATGY 5 cut(s) 209, 1158, 1264, 1352, 1494
BstPAI GACNNNNGTC 1 cut(s) 1461
BstSCI CCNGG 3 cut(s) 275, 1236, 1846
BstSFI CTRYAG 4 cut(s) 1092, 1634, 1830, 2148
BstUI CGCG 2 cut(s) 988, 1713
BstV1I GCAGC 8 cut(s) 17, 576, 1438, 1542, 1622, 1789, 1816, 1844
BstV2I GAAGAC 2 cut(s) 132, 159
BstX2I RGATCY 3 cut(s) 1675, 1738, 1971
BstXI CCANNNNNNTGG 2 cut(s) 448, 1401
BstYI RGATCY 3 cut(s) 1675, 1738, 1971
Bsu15I ATCGAT 1 cut(s) 1203
BsuRI GGCC 5 cut(s) 440, 803, 935, 1241, 2066
BsuTUI ATCGAT 1 cut(s) 1203
BtgI CCRYGG 2 cut(s) 447, 870
BtgZI GCGATG 1 cut(s) 1345
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 6 cut(s) 238, 475, 493, 742, 2009, 2181
BtsIMutI CAGTG 2 cut(s) 67, 1643
BveI ACCTGC 1 cut(s) 1560
Cac8I GCNNGC 4 cut(s) 207, 990, 1012, 1016
CaiI CAGNNNCTG 1 cut(s) 1847
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 2 cut(s) 802, 2064
ClaI ATCGAT 1 cut(s) 1203
CseI GACGC 1 cut(s) 860
Csp6I GTAC 3 cut(s) 639, 984, 2141
CviQI GTAC 3 cut(s) 639, 984, 2141
DdeI CTNAG 6 cut(s) 94, 237, 355, 779, 858, 1003
DpnI GATC 6 cut(s) 686, 948, 1119, 1677, 1740, 1973
DpnII GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
DraI TTTAAA 1 cut(s) 1275
EaeI YGGCCR 2 cut(s) 438, 933
Eam1104I CTCTTC 2 cut(s) 1104, 1331
EarI CTCTTC 2 cut(s) 1104, 1331
EciI GGCGGA 3 cut(s) 196, 232, 739
Eco130I CCWWGG 3 cut(s) 447, 1671, 1893
Eco31I GGTCTC 1 cut(s) 404
Eco32I GATATC 1 cut(s) 2200
Eco57I CTGAAG 5 cut(s) 123, 360, 963, 1935, 2013
Eco88I CYCGRG 2 cut(s) 830, 2033
EcoRII CCWGG 3 cut(s) 275, 1236, 1846
EcoRV GATATC 1 cut(s) 2200
EcoT14I CCWWGG 3 cut(s) 447, 1671, 1893
EcoT22I ATGCAT 2 cut(s) 421, 1262
ErhI CCWWGG 3 cut(s) 447, 1671, 1893
Esp3I CGTCTC 1 cut(s) 843
FaqI GGGAC 4 cut(s) 2, 128, 467, 1391
FauI CCCGC 2 cut(s) 218, 1718
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 9 cut(s) 6, 590, 855, 1452, 1556, 1611, 1803, 1830, 1833
FokI GGATG 6 cut(s) 245, 480, 482, 729, 1996, 2188
Fsp4HI GCNGC 9 cut(s) 6, 590, 855, 1452, 1556, 1611, 1803, 1830, 1833
FspBI CTAG 9 cut(s) 21, 149, 195, 623, 981, 1011, 1172, 1967, 2268
GlaI GCGC 1 cut(s) 524
GluI GCNGC 9 cut(s) 6, 590, 855, 1452, 1556, 1611, 1803, 1830, 1833
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 1 cut(s) 91
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 5 cut(s) 440, 803, 935, 1241, 2066
HapII CCGG 2 cut(s) 351, 556
HgaI GACGC 1 cut(s) 860
HhaI GCGC 1 cut(s) 525
Hin1I GRCGYC 1 cut(s) 852
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HincII GTYRAC 1 cut(s) 1575
HindII GTYRAC 1 cut(s) 1575
HinfI GANTC 7 cut(s) 239, 347, 374, 1180, 1200, 1499, 2220
HpaII CCGG 2 cut(s) 351, 556
HphI GGTGA 3 cut(s) 94, 205, 1756
Hpy166II GTNNAC 2 cut(s) 346, 1575
Hpy188III TCNNGA 9 cut(s) 47, 308, 326, 497, 563, 832, 841, 1082, 2195
Hpy8I GTNNAC 2 cut(s) 346, 1575
Hpy99I CGWCG 1 cut(s) 1191
HpyAV CCTTC 6 cut(s) 626, 740, 756, 1741, 1745, 2201
HpyCH4III ACNGT 8 cut(s) 13, 538, 760, 1414, 1438, 1638, 1843, 2262
HpyCH4IV ACGT 5 cut(s) 117, 567, 637, 1233, 1984
HpyF3I CTNAG 6 cut(s) 94, 237, 355, 779, 858, 1003
HpySE526I ACGT 5 cut(s) 117, 567, 637, 1233, 1984
Hsp92I GRCGYC 1 cut(s) 852
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
LmnI GCTCC 4 cut(s) 72, 1754, 2109, 2158
Lsp1109I GCAGC 8 cut(s) 17, 576, 1438, 1542, 1622, 1789, 1816, 1844
MaeI CTAG 9 cut(s) 21, 149, 195, 623, 981, 1011, 1172, 1967, 2268
MaeII ACGT 5 cut(s) 117, 567, 637, 1233, 1984
MaeIII GTNAC 5 cut(s) 820, 1150, 1414, 1837, 2256
MalI GATC 6 cut(s) 686, 948, 1119, 1677, 1740, 1973
MboI GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
MflI RGATCY 3 cut(s) 1675, 1738, 1971
MlsI TGGCCA 2 cut(s) 440, 935
MluI ACGCGT 1 cut(s) 986
MluNI TGGCCA 2 cut(s) 440, 935
MlyI GAGTC 3 cut(s) 248, 341, 368
MmeI TCCRAC 1 cut(s) 885
Mox20I TGGCCA 2 cut(s) 440, 935
Mph1103I ATGCAT 2 cut(s) 421, 1262
MroXI GAANNNNTTC 1 cut(s) 2001
MscI TGGCCA 2 cut(s) 440, 935
MseI TTAA 7 cut(s) 33, 968, 1274, 1389, 1680, 2240, 2278
MslI CAYNNNNRTG 2 cut(s) 446, 675
Msp20I TGGCCA 2 cut(s) 440, 935
MspA1I CMGCKG 2 cut(s) 857, 1835
MspI CCGG 2 cut(s) 351, 556
MspR9I CCNGG 3 cut(s) 277, 1238, 1848
Mva1269I GAATGC 1 cut(s) 1029
MvaI CCWGG 3 cut(s) 277, 1238, 1848
MvnI CGCG 2 cut(s) 988, 1713
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 400
NdeII GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
NheI GCTAGC 1 cut(s) 1010
NlaIV GGNNCC 2 cut(s) 1973, 2065
NmuCI GTSAC 2 cut(s) 1414, 1837
NsiI ATGCAT 2 cut(s) 421, 1262
NspI RCATGY 5 cut(s) 209, 1158, 1264, 1352, 1494
PaeI GCATGC 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 830
PciI ACATGT 1 cut(s) 1154
PctI GAATGC 1 cut(s) 1029
PdmI GAANNNNTTC 1 cut(s) 2001
PfeI GAWTC 4 cut(s) 1180, 1200, 1499, 2220
PflFI GACNNNGTC 1 cut(s) 119
PkrI GCNGC 9 cut(s) 7, 591, 856, 1453, 1557, 1612, 1804, 1831, 1834
Ple19I CGATCG 1 cut(s) 687
PleI GAGTC 3 cut(s) 247, 341, 368
PpsI GAGTC 3 cut(s) 247, 341, 368
PscI ACATGT 1 cut(s) 1154
PshAI GACNNNNGTC 1 cut(s) 1461
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 3 cut(s) 275, 1236, 1846
PspFI CCCAGC 1 cut(s) 525
PspGI CCWGG 3 cut(s) 275, 1236, 1846
PspN4I GGNNCC 2 cut(s) 1973, 2065
PspPI GGNCC 2 cut(s) 802, 2064
PstI CTGCAG 1 cut(s) 1834
PstNI CAGNNNCTG 1 cut(s) 1847
PsuI RGATCY 3 cut(s) 1675, 1738, 1971
PsyI GACNNNGTC 1 cut(s) 119
PvuI CGATCG 1 cut(s) 687
PvuII CAGCTG 1 cut(s) 1835
RsaI GTAC 3 cut(s) 640, 985, 2142
RsaNI GTAC 3 cut(s) 639, 984, 2141
RseI CAYNNNNRTG 2 cut(s) 446, 675
SaqAI TTAA 7 cut(s) 33, 968, 1274, 1389, 1680, 2240, 2278
SatI GCNGC 9 cut(s) 6, 590, 855, 1452, 1556, 1611, 1803, 1830, 1833
Sau3AI GATC 6 cut(s) 684, 946, 1117, 1675, 1738, 1971
Sau96I GGNCC 2 cut(s) 802, 2064
SchI GAGTC 3 cut(s) 248, 341, 368
ScrFI CCNGG 3 cut(s) 277, 1238, 1848
SfcI CTRYAG 4 cut(s) 1092, 1634, 1830, 2148
Sfr274I CTCGAG 1 cut(s) 830
SlaI CTCGAG 1 cut(s) 830
SmiMI CAYNNNNRTG 2 cut(s) 446, 675
SmlI CTYRAG 3 cut(s) 324, 830, 839
SmoI CTYRAG 3 cut(s) 324, 830, 839
SpeI ACTAGT 1 cut(s) 1171
SphI GCATGC 1 cut(s) 209
SsiI CCGC 8 cut(s) 181, 225, 243, 389, 750, 855, 1027, 1711
SspMI CTAG 9 cut(s) 21, 149, 195, 623, 981, 1011, 1172, 1967, 2268
StyD4I CCNGG 3 cut(s) 275, 1236, 1846
StyI CCWWGG 3 cut(s) 447, 1671, 1893
TaaI ACNGT 8 cut(s) 13, 538, 760, 1414, 1438, 1638, 1843, 2262
TaiI ACGT 5 cut(s) 120, 570, 640, 1236, 1987
TaqI TCGA 8 cut(s) 48, 123, 377, 687, 831, 1203, 1245, 1603
TatI WGTACW 1 cut(s) 2140
TauI GCSGC 1 cut(s) 857
TfiI GAWTC 4 cut(s) 1180, 1200, 1499, 2220
Tru1I TTAA 7 cut(s) 33, 968, 1274, 1389, 1680, 2240, 2278
Tru9I TTAA 7 cut(s) 33, 968, 1274, 1389, 1680, 2240, 2278
TscAI CASTG 2 cut(s) 74, 1643
TseFI GTSAC 2 cut(s) 1414, 1837
TseI GCWGC 8 cut(s) 5, 589, 1451, 1555, 1610, 1802, 1829, 1832
Tsp45I GTSAC 2 cut(s) 1414, 1837
TspGWI ACGGA 3 cut(s) 1175, 2175, 2188
TspRI CASTG 2 cut(s) 74, 1643
Tth111I GACNNNGTC 1 cut(s) 119
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 3 cut(s) 1248, 1690, 1718
XceI RCATGY 5 cut(s) 209, 1158, 1264, 1352, 1494
XhoI CTCGAG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 2001
XspI CTAG 9 cut(s) 21, 149, 195, 623, 981, 1011, 1172, 1967, 2268
Zsp2I ATGCAT 2 cut(s) 421, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.