protein ubiquitination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4219 | PF13961 | 16 - 42 | 3.2e-08 | Domain of unknown function (DUF4219) |
| Retrotran_gag_2 | PF14223 | 29 - 103 | 1.5e-09 | gag-polypeptide of LTR copia-type |
| Ank_2 | PF12796 | 167 - 241 | 3e-11 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 191 - 277 | 9.2e-15 | Ankyrin repeats (3 copies) |
| Ank_2 | PF12796 | 248 - 314 | 4e-07 | Ankyrin repeats (3 copies) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 724 |
| AccBSI | CCGCTC | 1 cut(s) | 674 |
| AciI | CCGC | 6 cut(s) | 219, 253, 581, 672, 1171, 1211 |
| AclWI | GGATC | 4 cut(s) | 568, 1424, 1603, 1740 |
| AcoI | YGGCCR | 1 cut(s) | 1311 |
| AcsI | RAATTY | 6 cut(s) | 210, 1268, 1400, 1628, 1842, 1948 |
| AcuI | CTGAAG | 1 cut(s) | 123 |
| AdeI | CACNNNGTG | 1 cut(s) | 1905 |
| AfaI | GTAC | 6 cut(s) | 531, 670, 690, 1037, 1329, 1507 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1309 |
| AflII | CTTAAG | 1 cut(s) | 1381 |
| AgsI | TTSAA | 9 cut(s) | 30, 86, 161, 295, 907, 1296, 1322, 1485, 1826 |
| AjnI | CCWGG | 1 cut(s) | 269 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 419, 451 |
| AleI | CACNNNNGTG | 1 cut(s) | 1023 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 275, 307 |
| AluBI | AGCT | 9 cut(s) | 395, 447, 554, 569, 797, 1049, 1442, 1532, 1718 |
| AluI | AGCT | 9 cut(s) | 395, 447, 554, 569, 797, 1049, 1442, 1532, 1718 |
| Alw21I | GWGCWC | 1 cut(s) | 901 |
| Alw26I | GTCTC | 5 cut(s) | 299, 730, 1023, 1365, 1531 |
| AlwI | GGATC | 4 cut(s) | 568, 1424, 1603, 1740 |
| Ama87I | CYCGRG | 1 cut(s) | 78 |
| AoxI | GGCC | 3 cut(s) | 267, 1168, 1311 |
| ApeKI | GCWGC | 2 cut(s) | 551, 794 |
| ApoI | RAATTY | 6 cut(s) | 210, 1268, 1400, 1628, 1842, 1948 |
| AseI | ATTAAT | 1 cut(s) | 243 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 290 |
| AspS9I | GGNCC | 1 cut(s) | 1168 |
| AsuHPI | GGTGA | 4 cut(s) | 491, 595, 785, 1658 |
| AsuII | TTCGAA | 2 cut(s) | 1618, 1713 |
| AvaI | CYCGRG | 1 cut(s) | 78 |
| BalI | TGGCCA | 1 cut(s) | 1313 |
| BanI | GGYRCC | 1 cut(s) | 724 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| Bbv12I | GWGCWC | 1 cut(s) | 901 |
| BbvI | GCAGC | 2 cut(s) | 563, 806 |
| BccI | CCATC | 3 cut(s) | 259, 968, 1493 |
| BceAI | ACGGC | 3 cut(s) | 712, 1005, 1241 |
| BciT130I | CCWGG | 1 cut(s) | 271 |
| BcoDI | GTCTC | 5 cut(s) | 299, 730, 1023, 1365, 1531 |
| BfaI | CTAG | 1 cut(s) | 555 |
| BfmI | CTRYAG | 2 cut(s) | 564, 1719 |
| BfrI | CTTAAG | 1 cut(s) | 1381 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 266 |
| BglII | AGATCT | 2 cut(s) | 106, 640 |
| BisI | GCNGC | 4 cut(s) | 552, 795, 1171, 1211 |
| BlsI | GCNGC | 4 cut(s) | 553, 796, 1172, 1212 |
| Bme1390I | CCNGG | 1 cut(s) | 271 |
| BmeT110I | CYCGRG | 1 cut(s) | 78 |
| BmgT120I | GGNCC | 1 cut(s) | 1168 |
| BmiI | GGNNCC | 1 cut(s) | 726 |
| BmrFI | CCNGG | 1 cut(s) | 271 |
| BmrI | ACTGGG | 1 cut(s) | 493 |
| BmsI | GCATC | 2 cut(s) | 361, 1959 |
| BmuI | ACTGGG | 1 cut(s) | 493 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| BpmI | CTGGAG | 1 cut(s) | 427 |
| Bpu10I | CCTNAGC | 1 cut(s) | 495 |
| Bpu14I | TTCGAA | 2 cut(s) | 1618, 1713 |
| BpuEI | CTTGAG | 2 cut(s) | 618, 1757 |
| Bsa29I | ATCGAT | 1 cut(s) | 366 |
| BsaJI | CCNNGG | 7 cut(s) | 189, 270, 1071, 1193, 1280, 1304, 1314 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 275, 305, 425, 455 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1309 |
| Bse1I | ACTGG | 2 cut(s) | 488, 1130 |
| Bse3DI | GCAATG | 1 cut(s) | 576 |
| BseBI | CCWGG | 1 cut(s) | 271 |
| BseCI | ATCGAT | 1 cut(s) | 366 |
| BseDI | CCNNGG | 7 cut(s) | 189, 270, 1071, 1193, 1280, 1304, 1314 |
| BseGI | GGATG | 4 cut(s) | 121, 1522, 1672, 1795 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1309 |
| BseMI | GCAATG | 1 cut(s) | 576 |
| BseMII | CTCAG | 1 cut(s) | 1542 |
| BseNI | ACTGG | 2 cut(s) | 488, 1130 |
| BseXI | GCAGC | 2 cut(s) | 563, 806 |
| BseYI | CCCAGC | 1 cut(s) | 797 |
| BshFI | GGCC | 3 cut(s) | 269, 1170, 1313 |
| BshNI | GGYRCC | 1 cut(s) | 724 |
| BshVI | ATCGAT | 1 cut(s) | 366 |
| BsiHKAI | GWGCWC | 1 cut(s) | 901 |
| BsiHKCI | CYCGRG | 1 cut(s) | 78 |
| BslFI | GGGAC | 3 cut(s) | 235, 1298, 1963 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1309 |
| BsmAI | GTCTC | 5 cut(s) | 299, 730, 1023, 1365, 1531 |
| BsmBI | CGTCTC | 1 cut(s) | 1023 |
| BsmFI | GGGAC | 3 cut(s) | 235, 1298, 1963 |
| BsmI | GAATGC | 3 cut(s) | 190, 1376, 1395 |
| BsnI | GGCC | 3 cut(s) | 269, 1170, 1313 |
| BsoBI | CYCGRG | 1 cut(s) | 78 |
| Bsp119I | TTCGAA | 2 cut(s) | 1618, 1713 |
| Bsp1286I | GDGCHC | 1 cut(s) | 901 |
| Bsp143I | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| Bsp19I | CCATGG | 1 cut(s) | 1071 |
| BspACI | CCGC | 6 cut(s) | 219, 253, 581, 672, 1171, 1211 |
| BspANI | GGCC | 3 cut(s) | 269, 1170, 1313 |
| BspCNI | CTCAG | 1 cut(s) | 1541 |
| BspDI | ATCGAT | 1 cut(s) | 366 |
| BspHI | TCATGA | 2 cut(s) | 840, 1462 |
| BspLI | GGNNCC | 1 cut(s) | 726 |
| BspPI | GGATC | 4 cut(s) | 568, 1424, 1603, 1740 |
| BspQI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| BspT104I | TTCGAA | 2 cut(s) | 1618, 1713 |
| BspT107I | GGYRCC | 1 cut(s) | 724 |
| BspTI | CTTAAG | 1 cut(s) | 1381 |
| BsrBI | CCGCTC | 1 cut(s) | 674 |
| BsrDI | GCAATG | 1 cut(s) | 576 |
| BsrI | ACTGG | 2 cut(s) | 488, 1130 |
| BssECI | CCNNGG | 7 cut(s) | 189, 270, 1071, 1193, 1280, 1304, 1314 |
| BssMI | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| BssT1I | CCWWGG | 3 cut(s) | 189, 1071, 1304 |
| Bst2UI | CCWGG | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 7 cut(s) | 16, 291, 422, 1040, 1318, 1327, 1862 |
| Bst6I | CTCTTC | 6 cut(s) | 141, 330, 576, 681, 789, 894 |
| BstAFI | CTTAAG | 1 cut(s) | 1381 |
| BstBI | TTCGAA | 2 cut(s) | 1618, 1713 |
| BstC8I | GCNNGC | 3 cut(s) | 7, 1144, 1906 |
| BstDEI | CTNAG | 3 cut(s) | 495, 533, 1528 |
| BstDSI | CCRYGG | 4 cut(s) | 1071, 1193, 1280, 1314 |
| BstF5I | GGATG | 4 cut(s) | 121, 1522, 1672, 1795 |
| BstKTI | GATC | 9 cut(s) | 109, 563, 643, 1056, 1350, 1419, 1611, 1672, 1735 |
| BstMAI | GTCTC | 5 cut(s) | 299, 730, 1023, 1365, 1531 |
| BstMBI | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 200, 266 |
| BstNI | CCWGG | 1 cut(s) | 271 |
| BstNSI | RCATGY | 4 cut(s) | 203, 599, 917, 1150 |
| BstSCI | CCNGG | 1 cut(s) | 269 |
| BstSFI | CTRYAG | 2 cut(s) | 564, 1719 |
| BstV1I | GCAGC | 2 cut(s) | 563, 806 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BstX2I | RGATCY | 5 cut(s) | 106, 560, 640, 1416, 1732 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1025 |
| BstYI | RGATCY | 5 cut(s) | 106, 560, 640, 1416, 1732 |
| Bsu15I | ATCGAT | 1 cut(s) | 366 |
| BsuRI | GGCC | 3 cut(s) | 269, 1170, 1313 |
| BsuTUI | ATCGAT | 1 cut(s) | 366 |
| BtgI | CCRYGG | 4 cut(s) | 1071, 1193, 1280, 1314 |
| BtsCI | GGATG | 4 cut(s) | 121, 1522, 1672, 1795 |
| BtsIMutI | CAGTG | 1 cut(s) | 1045 |
| Cac8I | GCNNGC | 3 cut(s) | 7, 1144, 1906 |
| CciI | TCATGA | 2 cut(s) | 840, 1462 |
| Cfr13I | GGNCC | 1 cut(s) | 1168 |
| ClaI | ATCGAT | 1 cut(s) | 366 |
| CseI | GACGC | 1 cut(s) | 716 |
| Csp6I | GTAC | 6 cut(s) | 530, 669, 689, 1036, 1328, 1506 |
| CviQI | GTAC | 6 cut(s) | 530, 669, 689, 1036, 1328, 1506 |
| DdeI | CTNAG | 3 cut(s) | 495, 533, 1528 |
| DpnI | GATC | 9 cut(s) | 108, 562, 642, 1055, 1349, 1418, 1610, 1671, 1734 |
| DpnII | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| DraI | TTTAAA | 2 cut(s) | 1912, 1947 |
| DraIII | CACNNNGTG | 1 cut(s) | 1905 |
| EaeI | YGGCCR | 1 cut(s) | 1311 |
| Eam1104I | CTCTTC | 6 cut(s) | 141, 330, 576, 681, 789, 894 |
| EarI | CTCTTC | 6 cut(s) | 141, 330, 576, 681, 789, 894 |
| Eco130I | CCWWGG | 3 cut(s) | 189, 1071, 1304 |
| Eco32I | GATATC | 1 cut(s) | 350 |
| Eco57I | CTGAAG | 1 cut(s) | 123 |
| Eco88I | CYCGRG | 1 cut(s) | 78 |
| EcoRII | CCWGG | 1 cut(s) | 269 |
| EcoRV | GATATC | 1 cut(s) | 350 |
| EcoT14I | CCWWGG | 3 cut(s) | 189, 1071, 1304 |
| EcoT22I | ATGCAT | 1 cut(s) | 1974 |
| ErhI | CCWWGG | 3 cut(s) | 189, 1071, 1304 |
| Esp3I | CGTCTC | 1 cut(s) | 1023 |
| FaqI | GGGAC | 3 cut(s) | 235, 1298, 1963 |
| FauI | CCCGC | 2 cut(s) | 212, 260 |
| FauNDI | CATATG | 1 cut(s) | 1959 |
| Fnu4HI | GCNGC | 4 cut(s) | 552, 795, 1171, 1211 |
| FokI | GGATG | 4 cut(s) | 128, 1529, 1679, 1802 |
| Fsp4HI | GCNGC | 4 cut(s) | 552, 795, 1171, 1211 |
| FspBI | CTAG | 1 cut(s) | 555 |
| GluI | GCNGC | 4 cut(s) | 552, 795, 1171, 1211 |
| GsaI | CCCAGC | 1 cut(s) | 801 |
| GsuI | CTGGAG | 1 cut(s) | 427 |
| HaeIII | GGCC | 3 cut(s) | 269, 1170, 1313 |
| HgaI | GACGC | 1 cut(s) | 716 |
| HincII | GTYRAC | 2 cut(s) | 124, 387 |
| HindII | GTYRAC | 2 cut(s) | 124, 387 |
| HinfI | GANTC | 5 cut(s) | 223, 440, 464, 631, 1581 |
| HphI | GGTGA | 4 cut(s) | 491, 595, 785, 1658 |
| Hpy166II | GTNNAC | 5 cut(s) | 124, 387, 706, 1541, 1780 |
| Hpy188I | TCNGA | 2 cut(s) | 417, 1347 |
| Hpy188III | TCNNGA | 8 cut(s) | 137, 635, 644, 841, 904, 1463, 1736, 1835 |
| Hpy8I | GTNNAC | 5 cut(s) | 124, 387, 706, 1541, 1780 |
| HpyAV | CCTTC | 5 cut(s) | 398, 584, 688, 1037, 1258 |
| HpyCH4III | ACNGT | 7 cut(s) | 16, 291, 422, 1040, 1318, 1327, 1862 |
| HpyCH4IV | ACGT | 2 cut(s) | 313, 1636 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 200, 266 |
| HpyF3I | CTNAG | 3 cut(s) | 495, 533, 1528 |
| HpySE526I | ACGT | 2 cut(s) | 313, 1636 |
| Kzo9I | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| LguI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| LmnI | GCTCC | 3 cut(s) | 1046, 1259, 1447 |
| Lsp1109I | GCAGC | 2 cut(s) | 563, 806 |
| LweI | GCATC | 2 cut(s) | 361, 1959 |
| MaeI | CTAG | 1 cut(s) | 555 |
| MaeII | ACGT | 2 cut(s) | 313, 1636 |
| MaeIII | GTNAC | 2 cut(s) | 479, 1186 |
| MalI | GATC | 9 cut(s) | 108, 562, 642, 1055, 1349, 1418, 1610, 1671, 1734 |
| MbiI | CCGCTC | 1 cut(s) | 674 |
| MboI | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| MfeI | CAATTG | 2 cut(s) | 30, 877 |
| MflI | RGATCY | 5 cut(s) | 106, 560, 640, 1416, 1732 |
| MhlI | GDGCHC | 1 cut(s) | 901 |
| MlsI | TGGCCA | 1 cut(s) | 1313 |
| MluNI | TGGCCA | 1 cut(s) | 1313 |
| MlyI | GAGTC | 3 cut(s) | 217, 434, 625 |
| MmeI | TCCRAC | 2 cut(s) | 450, 897 |
| Mox20I | TGGCCA | 1 cut(s) | 1313 |
| Mph1103I | ATGCAT | 1 cut(s) | 1974 |
| MroXI | GAANNNNTTC | 1 cut(s) | 290 |
| MscI | TGGCCA | 1 cut(s) | 1313 |
| MslI | CAYNNNNRTG | 2 cut(s) | 581, 1023 |
| Msp20I | TGGCCA | 1 cut(s) | 1313 |
| MspA1I | CMGCKG | 3 cut(s) | 395, 797, 1532 |
| MspCI | CTTAAG | 1 cut(s) | 1381 |
| MspR9I | CCNGG | 1 cut(s) | 271 |
| MunI | CAATTG | 2 cut(s) | 30, 877 |
| Mva1269I | GAATGC | 3 cut(s) | 190, 1376, 1395 |
| MvaI | CCWGG | 1 cut(s) | 271 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 200, 266 |
| NcoI | CCATGG | 1 cut(s) | 1071 |
| NdeI | CATATG | 1 cut(s) | 1959 |
| NdeII | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| NlaIV | GGNNCC | 1 cut(s) | 726 |
| NmuCI | GTSAC | 1 cut(s) | 479 |
| NsiI | ATGCAT | 1 cut(s) | 1974 |
| NspI | RCATGY | 4 cut(s) | 203, 599, 917, 1150 |
| NspV | TTCGAA | 2 cut(s) | 1618, 1713 |
| OliI | CACNNNNGTG | 1 cut(s) | 1023 |
| PagI | TCATGA | 2 cut(s) | 840, 1462 |
| PciSI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1866 |
| PctI | GAATGC | 3 cut(s) | 190, 1376, 1395 |
| PdmI | GAANNNNTTC | 1 cut(s) | 290 |
| PfeI | GAWTC | 2 cut(s) | 464, 1581 |
| PkrI | GCNGC | 4 cut(s) | 553, 796, 1172, 1212 |
| PleI | GAGTC | 3 cut(s) | 217, 434, 625 |
| PpsI | GAGTC | 3 cut(s) | 217, 434, 625 |
| PshBI | ATTAAT | 1 cut(s) | 243 |
| Psp6I | CCWGG | 1 cut(s) | 269 |
| PspFI | CCCAGC | 1 cut(s) | 797 |
| PspGI | CCWGG | 1 cut(s) | 269 |
| PspN4I | GGNNCC | 1 cut(s) | 726 |
| PspPI | GGNCC | 1 cut(s) | 1168 |
| PsuI | RGATCY | 5 cut(s) | 106, 560, 640, 1416, 1732 |
| PvuII | CAGCTG | 3 cut(s) | 395, 797, 1532 |
| RsaI | GTAC | 6 cut(s) | 531, 670, 690, 1037, 1329, 1507 |
| RsaNI | GTAC | 6 cut(s) | 530, 669, 689, 1036, 1328, 1506 |
| RseI | CAYNNNNRTG | 2 cut(s) | 581, 1023 |
| SapI | GCTCTTC | 4 cut(s) | 576, 681, 789, 894 |
| SatI | GCNGC | 4 cut(s) | 552, 795, 1171, 1211 |
| Sau3AI | GATC | 9 cut(s) | 106, 560, 640, 1053, 1347, 1416, 1608, 1669, 1732 |
| Sau96I | GGNCC | 1 cut(s) | 1168 |
| SchI | GAGTC | 3 cut(s) | 217, 434, 625 |
| ScrFI | CCNGG | 1 cut(s) | 271 |
| SduI | GDGCHC | 1 cut(s) | 901 |
| SfaNI | GCATC | 2 cut(s) | 361, 1959 |
| SfcI | CTRYAG | 2 cut(s) | 564, 1719 |
| SfuI | TTCGAA | 2 cut(s) | 1618, 1713 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 581, 1023 |
| SmlI | CTYRAG | 3 cut(s) | 633, 1381, 1736 |
| SmoI | CTYRAG | 3 cut(s) | 633, 1381, 1736 |
| SsiI | CCGC | 6 cut(s) | 219, 253, 581, 672, 1171, 1211 |
| SspMI | CTAG | 1 cut(s) | 555 |
| StyD4I | CCNGG | 1 cut(s) | 269 |
| StyI | CCWWGG | 3 cut(s) | 189, 1071, 1304 |
| TaaI | ACNGT | 7 cut(s) | 16, 291, 422, 1040, 1318, 1327, 1862 |
| TaiI | ACGT | 2 cut(s) | 316, 1639 |
| TaqI | TCGA | 6 cut(s) | 226, 366, 438, 1056, 1618, 1713 |
| TatI | WGTACW | 3 cut(s) | 529, 688, 1035 |
| TauI | GCSGC | 2 cut(s) | 1173, 1213 |
| TfiI | GAWTC | 2 cut(s) | 464, 1581 |
| TscAI | CASTG | 1 cut(s) | 1045 |
| TseFI | GTSAC | 1 cut(s) | 479 |
| TseI | GCWGC | 2 cut(s) | 551, 794 |
| Tsp45I | GTSAC | 1 cut(s) | 479 |
| TspGWI | ACGGA | 2 cut(s) | 1174, 1269 |
| TspRI | CASTG | 1 cut(s) | 1045 |
| Vha464I | CTTAAG | 1 cut(s) | 1381 |
| VspI | ATTAAT | 1 cut(s) | 243 |
| XapI | RAATTY | 6 cut(s) | 210, 1268, 1400, 1628, 1842, 1948 |
| XceI | RCATGY | 4 cut(s) | 203, 599, 917, 1150 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1094 |
| XmnI | GAANNNNTTC | 1 cut(s) | 290 |
| XspI | CTAG | 1 cut(s) | 555 |
| Zsp2I | ATGCAT | 1 cut(s) | 1974 |