Rroxscaffold_5G00374320

phosphoenolpyruvate carboxylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
55387891 .. 55395918
8028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374320.1

Sequence Viewer

Length: 456 bp
ATGTTGGTCATTTTAACGAAGATTGCATTGGGGCGGGAATCGGTAGACGTGCTTGAAACACTAGATGCAATTACCAAATTTTGGATATGGGCACATACGGTTAGTGGGATGAAGAAAAGAAAACTGGAATTTCTAACAAGAGAGCTCAAGGGAAGAACACCGCTAGTCTCATCTAGCATGGAGCTTAAACTCTCAAGTTATGGGCAGAACCAAGTTTCATCAACTTGTCATTCATATAGCTCATGTGGGGAATTGGCAGCAACAATGCCATGCAGTCCTTCATGGGGAAATAATATGGAGCTCAAGGAGGTGATGAGATTGAGCAGTGAATTGAATGGTTACATATTATCTTTTCGTTATGTTAAAGCAAATAGAGTATCAAATAGAGCACTCTTTGCTAGTTGGTGCATGGTTGAATACATTTATTTAGTAGAGACTCTTGATATCATTTTATAA

Protein Analysis

151

Amino Acids

17.13

Weight (kDa)

8.69

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 454
AccB7I CCANNNNNTGG 1 cut(s) 81
AccI GTMKAC 1 cut(s) 45
AciI CCGC 2 cut(s) 34, 161
AcsI RAATTY 2 cut(s) 77, 128
AfiI CCNNNNNNNGG 2 cut(s) 81, 284
AgsI TTSAA 3 cut(s) 56, 334, 416
AjiI CACGTC 1 cut(s) 49
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 4 cut(s) 145, 184, 240, 301
AluI AGCT 4 cut(s) 145, 184, 240, 301
Alw21I GWGCWC 3 cut(s) 147, 303, 391
Alw26I GTCTC 2 cut(s) 172, 428
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 77, 128
AsuHPI GGTGA 1 cut(s) 322
BaeGI GKGCMC 1 cut(s) 94
BanII GRGCYC 2 cut(s) 147, 303
Bbv12I GWGCWC 3 cut(s) 147, 303, 391
BbvI GCAGC 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 172, 428
BfaI CTAG 4 cut(s) 62, 164, 174, 399
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 49
BmsI GCATC 1 cut(s) 55
BpuEI CTTGAG 3 cut(s) 131, 178, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 284
Bse1I ACTGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 81, 284
BseNI ACTGG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 94
BseXI GCAGC 1 cut(s) 269
BsiHKAI GWGCWC 3 cut(s) 147, 303, 391
BslI CCNNNNNNNGG 2 cut(s) 81, 284
BsmAI GTCTC 2 cut(s) 172, 428
Bsp1286I GDGCHC 4 cut(s) 94, 147, 303, 391
BspACI CCGC 2 cut(s) 34, 161
BsrI ACTGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 100
BstAPI GCANNNNNTGC 1 cut(s) 395
BstF5I GGATG 1 cut(s) 114
BstMAI GTCTC 2 cut(s) 172, 428
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 269
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
CviAII CATG 5 cut(s) 178, 243, 270, 282, 409
CviJI RGCY 4 cut(s) 145, 184, 240, 301
CviKI_1 RGCY 4 cut(s) 145, 184, 240, 301
Ecl136II GAGCTC 2 cut(s) 145, 301
Eco24I GRGCYC 2 cut(s) 147, 303
Eco32I GATATC 1 cut(s) 445
Eco53kI GAGCTC 2 cut(s) 145, 301
EcoICRI GAGCTC 2 cut(s) 145, 301
EcoRV GATATC 1 cut(s) 445
EcoT38I GRGCYC 2 cut(s) 147, 303
FaeI CATG 5 cut(s) 181, 246, 273, 285, 412
FatI CATG 5 cut(s) 177, 242, 269, 281, 408
FauI CCCGC 1 cut(s) 27
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 2 cut(s) 147, 303
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 4 cut(s) 62, 164, 174, 399
GluI GCNGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 181, 246, 273, 285, 412
HinfI GANTC 2 cut(s) 38, 436
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 4 cut(s) 26, 68, 273, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 5 cut(s) 181, 246, 273, 285, 412
LmnI GCTCC 2 cut(s) 181, 298
LpnPI CCDG 1 cut(s) 110
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 55
MaeI CTAG 4 cut(s) 62, 164, 174, 399
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 338
MboII GAAGA 3 cut(s) 31, 124, 165
MhlI GDGCHC 4 cut(s) 94, 147, 303, 391
MluCI AATT 5 cut(s) 69, 77, 128, 251, 329
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 1 cut(s) 301
MseI TTAA 3 cut(s) 14, 186, 363
MwoI GCNNNNNNNGC 1 cut(s) 395
NlaIII CATG 5 cut(s) 181, 246, 273, 285, 412
PfeI GAWTC 1 cut(s) 38
PflMI CCANNNNNTGG 1 cut(s) 81
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PsiI TTATAA 1 cut(s) 454
Psp124BI GAGCTC 2 cut(s) 147, 303
SacI GAGCTC 2 cut(s) 147, 303
SaqAI TTAA 3 cut(s) 14, 186, 363
SatI GCNGC 1 cut(s) 258
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 4 cut(s) 94, 147, 303, 391
SetI ASST 6 cut(s) 51, 147, 186, 242, 303, 312
SfaNI GCATC 1 cut(s) 55
SmlI CTYRAG 3 cut(s) 146, 193, 302
SmoI CTYRAG 3 cut(s) 146, 193, 302
Sse9I AATT 5 cut(s) 69, 77, 128, 251, 329
SsiI CCGC 2 cut(s) 34, 161
SspMI CTAG 4 cut(s) 62, 164, 174, 399
SstI GAGCTC 2 cut(s) 147, 303
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 51
TasI AATT 5 cut(s) 69, 77, 128, 251, 329
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 3 cut(s) 14, 186, 363
Tru9I TTAA 3 cut(s) 14, 186, 363
TscAI CASTG 1 cut(s) 331
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 4 cut(s) 125, 207, 222, 270
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 81
XapI RAATTY 2 cut(s) 77, 128
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 4 cut(s) 62, 164, 174, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.