Rh7AG328500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000267
Physical Location & Seq
Reverse (-)
37749521 .. 37749903
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG328500.1

Sequence Viewer

Length: 306 bp
ATGGCCGATCACCGGCGAGTGGGTCGATGGTCGCCAGACTGGAAGTCATCTGCAATGTTGTTCGTCGTCGTTACGAAGGATTCGTGGAGACATGATGGGTGGATGAATTCCGGACCTGTGGTACGCTCTGGATCCGATTTGGATATGCTGTGGTTCGTGGTCAGGCCACCCTTATTTGCCGGAATTCATTGCCGATCGCAGCATGATGATCTGGCAGCGGTTCTGACCCGCACGGGCTGGGTCGGCAGGCTGCTGCCATTCGTTGAAAGGATAACGACAAACTGGTATTATAAGTATTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.8

Weight (kDa)

9.3

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 110
AciI CCGC 2 cut(s) 218, 229
AclWI GGATC 2 cut(s) 126, 139
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 106, 183
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 12, 19
AgsI TTSAA 1 cut(s) 266
AhdI GACNNNNNGTC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 2 cut(s) 126, 139
Aor13HI TCCGGA 1 cut(s) 110
AoxI GGCC 2 cut(s) 3, 164
ApeKI GCWGC 4 cut(s) 199, 215, 250, 253
ApoI RAATTY 2 cut(s) 106, 183
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
BamHI GGATCC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 211, 227, 237, 240
BccI CCATC 2 cut(s) 21, 89
BcoDI GTCTC 1 cut(s) 82
BisI GCNGC 4 cut(s) 200, 216, 251, 254
BlsI GCNGC 4 cut(s) 201, 217, 252, 255
Bme18I GGWCC 1 cut(s) 113
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 19
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 2 cut(s) 44, 287
Bse3DI GCAATG 2 cut(s) 60, 187
BseAI TCCGGA 1 cut(s) 110
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 12, 19
BseMI GCAATG 2 cut(s) 60, 187
BseNI ACTGG 2 cut(s) 44, 287
BseXI GCAGC 4 cut(s) 211, 227, 237, 240
BseYI CCCAGC 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 5, 166
BsiEI CGRYCG 1 cut(s) 197
BsiSI CCGG 3 cut(s) 13, 111, 180
BslI CCNNNNNNNGG 2 cut(s) 12, 19
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 2 cut(s) 5, 166
Bsp13I TCCGGA 1 cut(s) 110
Bsp143I GATC 4 cut(s) 7, 131, 194, 208
BspACI CCGC 2 cut(s) 218, 229
BspANI GGCC 2 cut(s) 5, 166
BspEI TCCGGA 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 126, 139
BsrDI GCAATG 2 cut(s) 60, 187
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 2 cut(s) 44, 287
BssAI RCCGGY 1 cut(s) 12
BssMI GATC 4 cut(s) 7, 131, 194, 208
BstC8I GCNNGC 1 cut(s) 248
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 4 cut(s) 10, 134, 197, 211
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 7, 131, 194, 208
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 211, 227, 237, 240
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 2 cut(s) 5, 166
BtsCI GGATG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 92, 203
CviJI RGCY 4 cut(s) 5, 166, 237, 250
CviKI_1 RGCY 4 cut(s) 5, 166, 237, 250
CviQI GTAC 1 cut(s) 122
DpnI GATC 4 cut(s) 9, 133, 196, 210
DpnII GATC 4 cut(s) 7, 131, 194, 208
DriI GACNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 113
EcoRI GAATTC 2 cut(s) 106, 183
FaeI CATG 2 cut(s) 95, 206
FaiI YATR 4 cut(s) 93, 146, 204, 291
FatI CATG 2 cut(s) 91, 202
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 4 cut(s) 200, 216, 251, 254
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 4 cut(s) 200, 216, 251, 254
GluI GCNGC 4 cut(s) 200, 216, 251, 254
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 2 cut(s) 5, 166
HapII CCGG 3 cut(s) 13, 111, 180
Hin1II CATG 2 cut(s) 95, 206
HinfI GANTC 1 cut(s) 80
HpaII CCGG 3 cut(s) 13, 111, 180
Hpy188I TCNGA 2 cut(s) 136, 225
Hpy188III TCNNGA 2 cut(s) 111, 129
Hpy99I CGWCG 2 cut(s) 68, 71
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
Hsp92II CATG 2 cut(s) 95, 206
Kpn2I TCCGGA 1 cut(s) 110
Kzo9I GATC 4 cut(s) 7, 131, 194, 208
Lsp1109I GCAGC 4 cut(s) 211, 227, 237, 240
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 9, 133, 196, 210
MboI GATC 4 cut(s) 7, 131, 194, 208
MflI RGATCY 1 cut(s) 131
MluCI AATT 2 cut(s) 106, 183
MroI TCCGGA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 3 cut(s) 13, 111, 180
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 4 cut(s) 7, 131, 194, 208
NlaIII CATG 2 cut(s) 95, 206
NlaIV GGNNCC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 201, 217, 252, 255
Ple19I CGATCG 1 cut(s) 197
PsiI TTATAA 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 131
PvuI CGATCG 1 cut(s) 197
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SatI GCNGC 4 cut(s) 200, 216, 251, 254
Sau3AI GATC 4 cut(s) 7, 131, 194, 208
Sau96I GGNCC 1 cut(s) 113
SetI ASST 1 cut(s) 118
SgrAI CRCCGGYG 1 cut(s) 12
SinI GGWCC 1 cut(s) 113
Sse9I AATT 2 cut(s) 106, 183
SsiI CCGC 2 cut(s) 218, 229
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 106, 183
TfiI GAWTC 1 cut(s) 80
TseI GCWGC 4 cut(s) 199, 215, 250, 253
TspDTI ATGAA 2 cut(s) 119, 176
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 106, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.