RchiOBHm_Chr6g0280101

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000267
Physical Location & Seq
Forward (+)
43419095 .. 43420259
1165 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25119

Sequence Viewer

Length: 528 bp
ATGAGGAAGGGCTGGTGGGTCGACCTGCGTTCGCATGCTGCAAGAGAGGTGCTGGCGGAGGCACTGCCGGTGATGAAACGACGAAGGAGTTGCAGACGGGGTGGTGGGGAGATGCTTGCAGATCGGTGGCGAGATGCTTGCAGGCAGCTGTTCTCTTCGATTGGGCTAAGTGGGGTTTGGGCTATGGGCCCAATTTCCCTTTATTTTATGTTTTATTGTCTTTGGTTTTTGATGAAACTTAGTGTCAACGAAATTGTTTTTCGGTGGCAACATAGTGGGAAAGCTGATAGAAATAGTAAATTATGGCTCCGCGTGAGCAAAATCTTTCTGGTATGTCACCACCTTTGTAAAGCGAATAGAGTAGCCAATGATGCACTCTTTGCTAATTGGTGCTCGTTAGAATACATATTTTCTGTAGAGACTCTCGTTATGATCTCAGGCTATTCTCTTCATGCTTATTGTAATCTGGGGTTTAGGTATCATGTCCCCCCCATGTATTCTGAGGTTTCATTAATGGTCAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.42

Weight (kDa)

9.71

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 312
AciI CCGC 2 cut(s) 56, 310
AluBI AGCT 2 cut(s) 148, 284
AluI AGCT 2 cut(s) 148, 284
Alw21I GWGCWC 1 cut(s) 395
Alw26I GTCTC 1 cut(s) 413
AoxI GGCC 1 cut(s) 187
ApaI GGGCCC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 38, 145
AseI ATTAAT 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 187, 188
AsuHPI GGTGA 2 cut(s) 82, 329
BaeGI GKGCMC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 395
BbvI GCAGC 2 cut(s) 25, 157
BcgI CGANNNNNNTGC 4 cut(s) 72, 106, 120, 154
BcoDI GTCTC 1 cut(s) 413
BfmI CTRYAG 1 cut(s) 414
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 2 cut(s) 39, 146
BlsI GCNGC 2 cut(s) 40, 147
BmgT120I GGNCC 2 cut(s) 187, 188
BmiI GGNNCC 2 cut(s) 189, 308
BmsI GCATC 3 cut(s) 102, 124, 361
Bse118I RCCGGY 1 cut(s) 67
BseMII CTCAG 2 cut(s) 450, 492
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 2 cut(s) 25, 157
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 395
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 1 cut(s) 470
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 189
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 191, 395
Bsp143I GATC 2 cut(s) 121, 432
BspACI CCGC 2 cut(s) 56, 310
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 2 cut(s) 449, 493
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 189, 308
BspMI ACCTGC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssMI GATC 2 cut(s) 121, 432
Bst6I CTCTTC 2 cut(s) 160, 453
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 5 cut(s) 36, 54, 117, 139, 143
BstDEI CTNAG 4 cut(s) 167, 239, 436, 501
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 2 cut(s) 124, 435
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 121, 432
BstMWI GCNNNNNNNGC 2 cut(s) 371, 380
BstNSI RCATGY 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 25, 157
BsuRI GGCC 1 cut(s) 189
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 62
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 5 cut(s) 36, 54, 117, 139, 143
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 187, 188
CviAII CATG 4 cut(s) 35, 452, 482, 493
DdeI CTNAG 4 cut(s) 167, 239, 436, 501
DpnI GATC 2 cut(s) 123, 434
DpnII GATC 2 cut(s) 121, 432
Eam1104I CTCTTC 2 cut(s) 160, 453
EarI CTCTTC 2 cut(s) 160, 453
EciI GGCGGA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 4 cut(s) 38, 455, 485, 496
FaqI GGGAC 1 cut(s) 470
FatI CATG 4 cut(s) 34, 451, 481, 492
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 39, 146
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 2 cut(s) 39, 146
GluI GCNGC 2 cut(s) 39, 146
HaeIII GGCC 1 cut(s) 189
HapII CCGG 1 cut(s) 68
Hin1II CATG 4 cut(s) 38, 455, 485, 496
HincII GTYRAC 2 cut(s) 22, 247
HindII GTYRAC 2 cut(s) 22, 247
HinfI GANTC 1 cut(s) 421
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 82, 329
Hpy166II GTNNAC 2 cut(s) 22, 247
Hpy188I TCNGA 1 cut(s) 502
Hpy8I GTNNAC 2 cut(s) 22, 247
Hpy99I CGWCG 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 41, 93, 119, 141, 374
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 380
HpyF3I CTNAG 4 cut(s) 167, 239, 436, 501
Hsp92II CATG 4 cut(s) 38, 455, 485, 496
Kzo9I GATC 2 cut(s) 121, 432
LmnI GCTCC 1 cut(s) 312
LpnPI CCDG 7 cut(s) 38, 38, 81, 127, 314, 423, 452
Lsp1109I GCAGC 2 cut(s) 25, 157
LweI GCATC 3 cut(s) 102, 124, 361
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 123, 434
MboI GATC 2 cut(s) 121, 432
MboII GAAGA 2 cut(s) 147, 440
MhlI GDGCHC 2 cut(s) 191, 395
MluCI AATT 4 cut(s) 192, 252, 299, 385
MlyI GAGTC 1 cut(s) 415
MnlI CCTC 3 cut(s) 40, 52, 496
MseI TTAA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 1 cut(s) 68
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 371, 380
NdeII GATC 2 cut(s) 121, 432
NlaIII CATG 4 cut(s) 38, 455, 485, 496
NlaIV GGNNCC 2 cut(s) 189, 308
NmuCI GTSAC 1 cut(s) 335
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 40, 147
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PshBI ATTAAT 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 189, 308
PspOMI GGGCCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 187, 188
PvuII CAGCTG 1 cut(s) 148
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 2 cut(s) 39, 146
Sau3AI GATC 2 cut(s) 121, 432
Sau96I GGNCC 2 cut(s) 187, 188
SchI GAGTC 1 cut(s) 415
SduI GDGCHC 2 cut(s) 191, 395
SetI ASST 7 cut(s) 27, 51, 150, 286, 345, 479, 507
SfaNI GCATC 3 cut(s) 102, 124, 361
SfcI CTRYAG 1 cut(s) 414
SphI GCATGC 1 cut(s) 38
Sse9I AATT 4 cut(s) 192, 252, 299, 385
SsiI CCGC 2 cut(s) 56, 310
TaqI TCGA 2 cut(s) 21, 158
TasI AATT 4 cut(s) 192, 252, 299, 385
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 2 cut(s) 38, 145
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 89, 248, 440, 498
TspRI CASTG 1 cut(s) 69
VspI ATTAAT 1 cut(s) 512
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.