Rorug02G0036800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000267
Physical Location & Seq
Reverse (-)
2893239 .. 2894778
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0036800.1

Sequence Viewer

Length: 402 bp
ATGAGCTGGGCAGGAGGAGACTGGATGTGTGGCGCATGCCAGCACTTGAATTTTAAAAAGCGGGAAGCATGCCAACGATGTGGGTACCCCAAGTATGGTGGCCCTGATCCCTCGACATATGGAAGCAACAGAACAGAAGTCTTGGCGGGGGACTGGTTTTGCAACTGTGGAGCTCACAATTATGCACAGAGACCAAATTGCTTCAGATGCACTGCATTGAAAAATGACTACAGTGGTGGGTATAACATGATGGCTTCTGGAGGCTATGGATCTGATGGCAGTGCACCACCAGGATGGAAAGCTGGTGACTGGATTTGCAATAGAGCCGGATGTGGAGTGCACAATTATGCTAACCGGCAAGAATGTTTTAAATGCAAAACTCCAAAGGACTACTGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.64

Weight (kDa)

8.56

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 100 - 129 1.1e-07 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 2 cut(s) 61, 146
AclWI GGATC 2 cut(s) 101, 277
AcsI RAATTY 1 cut(s) 49
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 95
AgsI TTSAA 2 cut(s) 49, 220
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 6, 173, 302
AluI AGCT 3 cut(s) 6, 173, 302
Alw21I GWGCWC 3 cut(s) 175, 286, 342
Alw26I GTCTC 2 cut(s) 12, 184
Alw44I GTGCAC 2 cut(s) 282, 338
AlwI GGATC 2 cut(s) 101, 277
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 2 cut(s) 282, 338
ApoI RAATTY 1 cut(s) 49
Asp718I GGTACC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 317
BaeGI GKGCMC 2 cut(s) 286, 342
BanI GGYRCC 1 cut(s) 84
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 3 cut(s) 175, 286, 342
BccI CCATC 3 cut(s) 244, 269, 288
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 12, 184
BfmI CTRYAG 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 26, 158, 314
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 30, 299, 335
BseLI CCNNNNNNNGG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 26, 158, 314
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 2 cut(s) 286, 342
BseYI CCCAGC 1 cut(s) 6
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 3 cut(s) 175, 286, 342
BsiSI CCGG 2 cut(s) 327, 355
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 12, 184
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 184
Bsp1286I GDGCHC 3 cut(s) 175, 286, 342
Bsp143I GATC 2 cut(s) 106, 269
BspACI CCGC 2 cut(s) 61, 146
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 101, 277
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 3 cut(s) 26, 158, 314
BssAI RCCGGY 1 cut(s) 354
BssMI GATC 2 cut(s) 106, 269
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 167, 233, 395
BstC8I GCNNGC 3 cut(s) 37, 41, 70
BstF5I GGATG 3 cut(s) 30, 299, 335
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 2 cut(s) 109, 272
BstMAI GTCTC 2 cut(s) 12, 184
BstMBI GATC 2 cut(s) 106, 269
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 39, 72
BstPAI GACNNNNGTC 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 2 cut(s) 286, 342
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 80, 294
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 3 cut(s) 30, 299, 335
BtsI GCAGTG 2 cut(s) 210, 286
BtsIMutI CAGTG 3 cut(s) 210, 238, 286
Cac8I GCNNGC 3 cut(s) 37, 41, 70
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 3 cut(s) 36, 69, 247
CviJI RGCY 7 cut(s) 6, 102, 173, 254, 264, 302, 326
CviKI_1 RGCY 7 cut(s) 6, 102, 173, 254, 264, 302, 326
CviQI GTAC 1 cut(s) 85
DpnI GATC 2 cut(s) 108, 271
DpnII GATC 2 cut(s) 106, 269
DraI TTTAAA 2 cut(s) 55, 370
Ecl136II GAGCTC 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 39, 72, 250
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 35, 68, 246
FauI CCCGC 2 cut(s) 54, 139
FauNDI CATATG 1 cut(s) 118
FokI GGATG 3 cut(s) 37, 306, 342
FriOI GRGCYC 1 cut(s) 175
GlaI GCGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 327, 355
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 39, 72, 250
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HpaII CCGG 2 cut(s) 327, 355
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 284, 340
Hpy188I TCNGA 2 cut(s) 206, 274
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 284, 340
HpyCH4III ACNGT 3 cut(s) 167, 233, 395
HpyCH4V TGCA 8 cut(s) 162, 185, 210, 215, 284, 318, 340, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 39, 72, 250
HspAI GCGC 1 cut(s) 33
KpnI GGTACC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 106, 269
LmnI GCTCC 1 cut(s) 170
LweI GCATC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 108, 271
MboI GATC 2 cut(s) 106, 269
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 3 cut(s) 175, 286, 342
MluCI AATT 4 cut(s) 49, 178, 196, 343
MnlI CCTC 3 cut(s) 8, 121, 254
MseI TTAA 2 cut(s) 54, 369
MslI CAYNNNNRTG 3 cut(s) 180, 292, 345
MspI CCGG 2 cut(s) 327, 355
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeI CATATG 1 cut(s) 118
NdeII GATC 2 cut(s) 106, 269
NlaIII CATG 3 cut(s) 39, 72, 250
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 39, 72
PaeI GCATGC 2 cut(s) 39, 72
PshAI GACNNNNGTC 1 cut(s) 393
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 3 cut(s) 180, 292, 345
SacI GAGCTC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 54, 369
Sau3AI GATC 2 cut(s) 106, 269
Sau96I GGNCC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 3 cut(s) 175, 286, 342
SetI ASST 3 cut(s) 8, 175, 304
SfaNI GCATC 1 cut(s) 197
SfcI CTRYAG 1 cut(s) 229
SmiMI CAYNNNNRTG 3 cut(s) 180, 292, 345
SphI GCATGC 2 cut(s) 39, 72
Sse9I AATT 4 cut(s) 49, 178, 196, 343
SsiI CCGC 2 cut(s) 61, 146
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 167, 233, 395
TaqI TCGA 1 cut(s) 113
TasI AATT 4 cut(s) 49, 178, 196, 343
Tru1I TTAA 2 cut(s) 54, 369
Tru9I TTAA 2 cut(s) 54, 369
TscAI CASTG 3 cut(s) 217, 238, 286
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 3 cut(s) 217, 238, 286
VneI GTGCAC 2 cut(s) 282, 338
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 39, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.