Rorug03G0336800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000267
Physical Location & Seq
Reverse (-)
39571683 .. 39572027
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0336800.1

Sequence Viewer

Length: 345 bp
ATGGATGATGAACAATCAAATCATGAGAACCGTCGTGAACCTGTGAAGAAGGCGCCTGACATTACAAAAGAGTTGGGAACTCCTGCTGTGATCAATGCAAGAATGAAGAGAGTTCAAATCCAAATGGAGAATGAGCAGTGTATTCAAGAGAAGAATTCTGACCCTCCTTTAGATCCAGAACCTGTGAAGAAGACTCGTGGCATTACAGTAGGGTTGAAAGCTCATGCTTCAGTGCGATCAAAAAAAGAATTCCAAACAAGATGGACAAGGACCAAAAGCTCCCTCAGACCATTGAAGCTAATGCTATATTTGTTAACGAGATTGGGTCATTCACAAACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.14

Weight (kDa)

9.94

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 2 cut(s) 154, 248
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 53
AgsI TTSAA 4 cut(s) 116, 146, 217, 295
AluBI AGCT 3 cut(s) 221, 279, 298
AluI AGCT 3 cut(s) 221, 279, 298
AlwI GGATC 1 cut(s) 167
AlwNI CAGNNNCTG 1 cut(s) 182
ApoI RAATTY 2 cut(s) 154, 248
AspLEI GCGC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 270
AvaII GGWCC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 197
BccI CCATC 1 cut(s) 255
BclI TGATCA 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 270
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 197
BsaHI GRCGYC 1 cut(s) 53
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 298
BshNI GGYRCC 1 cut(s) 52
Bsp143I GATC 3 cut(s) 90, 172, 236
BspCNI CTCAG 1 cut(s) 297
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 167
BspT107I GGYRCC 1 cut(s) 52
BssMI GATC 3 cut(s) 90, 172, 236
BssNI GRCGYC 1 cut(s) 53
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 32, 208
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 1 cut(s) 55
BstKTI GATC 3 cut(s) 93, 175, 239
BstMBI GATC 3 cut(s) 90, 172, 236
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 143, 237
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 22
CfoI GCGC 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 2 cut(s) 23, 224
CviJI RGCY 3 cut(s) 221, 279, 298
CviKI_1 RGCY 3 cut(s) 221, 279, 298
DdeI CTNAG 1 cut(s) 284
DinI GGCGCC 1 cut(s) 54
DpnI GATC 3 cut(s) 92, 174, 238
DpnII GATC 3 cut(s) 90, 172, 236
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 213
EcoRI GAATTC 2 cut(s) 154, 248
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
FaeI CATG 2 cut(s) 26, 227
FaiI YATR 3 cut(s) 24, 225, 307
FatI CATG 2 cut(s) 22, 223
FbaI TGATCA 1 cut(s) 90
FokI GGATG 1 cut(s) 17
GlaI GCGC 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 56
HhaI GCGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 2 cut(s) 26, 227
Hin6I GCGC 1 cut(s) 53
HinP1I GCGC 1 cut(s) 53
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 1 cut(s) 193
HpaI GTTAAC 1 cut(s) 315
Hpy166II GTNNAC 2 cut(s) 38, 315
Hpy188I TCNGA 2 cut(s) 160, 287
Hpy188III TCNNGA 4 cut(s) 23, 35, 146, 176
Hpy8I GTNNAC 2 cut(s) 38, 315
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 32, 208
HpyCH4V TGCA 1 cut(s) 98
HpyF3I CTNAG 1 cut(s) 284
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 26, 227
HspAI GCGC 1 cut(s) 53
KasI GGCGCC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 90
KspAI GTTAAC 1 cut(s) 315
Kzo9I GATC 3 cut(s) 90, 172, 236
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 5 cut(s) 54, 69, 96, 189, 195
MalI GATC 3 cut(s) 92, 174, 238
MboI GATC 3 cut(s) 90, 172, 236
MboII GAAGA 5 cut(s) 58, 118, 163, 199, 202
MflI RGATCY 1 cut(s) 172
MluCI AATT 3 cut(s) 154, 248, 340
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 2 cut(s) 174, 293
MseI TTAA 1 cut(s) 314
NarI GGCGCC 1 cut(s) 53
NdeII GATC 3 cut(s) 90, 172, 236
NlaIII CATG 2 cut(s) 26, 227
NlaIV GGNNCC 1 cut(s) 54
PagI TCATGA 1 cut(s) 22
PleI GAGTC 1 cut(s) 187
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 172
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 3 cut(s) 90, 172, 236
Sau96I GGNCC 1 cut(s) 270
SchI GAGTC 1 cut(s) 187
SetI ASST 5 cut(s) 43, 184, 223, 281, 300
SfoI GGCGCC 1 cut(s) 54
SinI GGWCC 1 cut(s) 270
Sse9I AATT 3 cut(s) 154, 248, 340
SspDI GGCGCC 1 cut(s) 52
TaaI ACNGT 2 cut(s) 32, 208
TasI AATT 3 cut(s) 154, 248, 340
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 2 cut(s) 143, 237
TspDTI ATGAA 2 cut(s) 24, 119
TspRI CASTG 2 cut(s) 143, 237
VpaK11BI GGWCC 1 cut(s) 270
XapI RAATTY 2 cut(s) 154, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.