FvH4_6g23340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000267
Physical Location & Seq
Forward (+)
17357117 .. 17358098
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23340.t1

Sequence Viewer

Length: 606 bp
ATGCATCTCTGTCTGGCGGCGTGCTCTCTCGCCGTCGTCGGACAGGCCTTGTCGGCCCCGTGTGGGTTCAGAATAAGCCAATTTCCCCTATTGAGATCCTTGATCGTGATGGGGAACTTTTGGTGGCGGTTTGCAGGGGGATGGGGTGCACTGCAATGGTGGTGGCTGGGAACTGGAGAGATTGTGGCAGCGCGGCTAGGCTTCGATCAGATCACTCCGAATGGGTTAAGATCTTTTCGATCTGGTCTGGAGGTGAGGTTGCAGAGCAAGGGTTGCGTTCTTCTGCGCGAGGGGGAGGACAGAGTGGGTTGGGCGCTCCGGCGATGCCGACGCGGCCGAGTTGGTGGTGAACCATCGGCGACGGCCGGCGATGGGATTGACCAGTTTACAATAAGTCCTGATCTCTATCTGATCTGGATACGTGGGTTACATCCCGGTTTGCGTGATTTGCGTACCATGTTTGCTCTTGGAAGTGGCAACATAGTAGGAAAGCTGTTAGACATAGTAACTTATGGCTCTGCACGAGCATTGTCTTTCCGGCAATATGGGTTTAGGTTTTATGTCCCCCCCTTATATTCTGCGGTTTCGTTAATGGTTAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.23

Weight (kDa)

10.21

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 193, 288, 333
AciI CCGC 5 cut(s) 17, 127, 193, 333, 581
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 2 cut(s) 334, 363
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 63, 372
AluBI AGCT 1 cut(s) 493
AluI AGCT 1 cut(s) 493
Alw21I GWGCWC 2 cut(s) 26, 151
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 1 cut(s) 90
AoxI GGCC 4 cut(s) 45, 54, 334, 363
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 188
AspLEI GCGC 3 cut(s) 193, 288, 316
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 265, 359
BaeGI GKGCMC 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BauI CACGAG 1 cut(s) 522
Bbv12I GWGCWC 2 cut(s) 26, 151
BbvI GCAGC 1 cut(s) 200
BccI CCATC 4 cut(s) 103, 135, 361, 365
BceAI ACGGC 2 cut(s) 17, 378
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 1 cut(s) 435
BfaI CTAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 317
BfuI GTATCC 1 cut(s) 411
BglI GCCNNNNNGGC 2 cut(s) 53, 333
BglII AGATCT 1 cut(s) 230
BisI GCNGC 4 cut(s) 18, 189, 194, 334
BlsI GCNGC 4 cut(s) 19, 190, 195, 335
Bme1390I CCNGG 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 2 cut(s) 13, 314
BpmI CTGGAG 2 cut(s) 195, 269
BpuMI CCSGG 1 cut(s) 435
BsaAI YACGTR 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 405
BsaXI ACNNNNNCTCC 4 cut(s) 168, 198, 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 372
Bse118I RCCGGY 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 178, 382
Bse3DI GCAATG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 405
BseGI GGATG 2 cut(s) 146, 430
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 2 cut(s) 63, 372
BseMI GCAATG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 178, 382
BseSI GKGCMC 1 cut(s) 151
BseX3I CGGCCG 2 cut(s) 334, 363
BseXI GCAGC 1 cut(s) 200
BseYI CCCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 504
Bsh1236I CGCG 3 cut(s) 193, 288, 333
Bsh1285I CGRYCG 2 cut(s) 337, 366
BshFI GGCC 4 cut(s) 47, 56, 336, 365
BsiEI CGRYCG 2 cut(s) 337, 366
BsiHKAI GWGCWC 2 cut(s) 26, 151
BsiSI CCGG 4 cut(s) 319, 366, 435, 538
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 2 cut(s) 63, 372
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 4 cut(s) 47, 56, 336, 365
Bsp1286I GDGCHC 2 cut(s) 26, 151
Bsp143I GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
BspACI CCGC 5 cut(s) 17, 127, 193, 333, 581
BspANI GGCC 4 cut(s) 47, 56, 336, 365
BspFNI CGCG 3 cut(s) 193, 288, 333
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 365
BsrI ACTGG 2 cut(s) 178, 382
BssAI RCCGGY 1 cut(s) 365
BssMI GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
BssSI CACGAG 1 cut(s) 522
Bst2BI CACGAG 1 cut(s) 522
BstAPI GCANNNNNTGC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 22, 367
BstF5I GGATG 2 cut(s) 146, 430
BstFNI CGCG 3 cut(s) 193, 288, 333
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 3 cut(s) 193, 288, 316
BstKTI GATC 8 cut(s) 98, 105, 208, 213, 233, 242, 403, 414
BstMBI GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
BstMCI CGRYCG 2 cut(s) 337, 366
BstMWI GCNNNNNNNGC 4 cut(s) 53, 273, 333, 448
BstSCI CCNGG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 3 cut(s) 193, 288, 333
BstV1I GCAGC 1 cut(s) 200
BstX2I RGATCY 2 cut(s) 95, 230
BstYI RGATCY 2 cut(s) 95, 230
BstZI CGGCCG 2 cut(s) 334, 363
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 4 cut(s) 47, 56, 336, 365
BtgZI GCGATG 2 cut(s) 337, 384
BtsCI GGATG 2 cut(s) 146, 430
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 22, 367
CfoI GCGC 3 cut(s) 193, 288, 316
Cfr10I RCCGGY 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 143, 178
CviAII CATG 2 cut(s) 457, 603
CviQI GTAC 1 cut(s) 453
DpnI GATC 8 cut(s) 97, 104, 207, 212, 232, 241, 402, 413
DpnII GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
EaeI YGGCCR 2 cut(s) 334, 363
EagI CGGCCG 2 cut(s) 334, 363
EclXI CGGCCG 2 cut(s) 334, 363
Eco147I AGGCCT 1 cut(s) 47
Eco52I CGGCCG 2 cut(s) 334, 363
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 460, 606
FaiI YATR 8 cut(s) 458, 482, 503, 513, 546, 561, 574, 604
FaqI GGGAC 1 cut(s) 548
FatI CATG 2 cut(s) 456, 602
Fnu4HI GCNGC 4 cut(s) 18, 189, 194, 334
FokI GGATG 2 cut(s) 153, 417
Fsp4HI GCNGC 4 cut(s) 18, 189, 194, 334
FspBI CTAG 1 cut(s) 197
GlaI GCGC 3 cut(s) 192, 287, 315
GluI GCNGC 4 cut(s) 18, 189, 194, 334
GsaI CCCAGC 1 cut(s) 170
GsuI CTGGAG 2 cut(s) 195, 269
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 4 cut(s) 47, 56, 336, 365
HapII CCGG 4 cut(s) 319, 366, 435, 538
HgaI GACGC 1 cut(s) 339
HhaI GCGC 3 cut(s) 193, 288, 316
Hin1II CATG 2 cut(s) 460, 606
Hin6I GCGC 3 cut(s) 191, 286, 314
HinP1I GCGC 3 cut(s) 191, 286, 314
HpaII CCGG 4 cut(s) 319, 366, 435, 538
HphI GGTGA 2 cut(s) 265, 359
Hpy166II GTNNAC 3 cut(s) 149, 350, 387
Hpy188I TCNGA 5 cut(s) 41, 71, 210, 219, 411
Hpy188III TCNNGA 4 cut(s) 106, 248, 398, 415
Hpy8I GTNNAC 3 cut(s) 149, 350, 387
Hpy99I CGWCG 4 cut(s) 38, 41, 333, 364
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 6 cut(s) 4, 134, 149, 154, 262, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 273, 333, 448
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 2 cut(s) 460, 606
HspAI GCGC 3 cut(s) 191, 286, 314
KroI GCCGGC 1 cut(s) 365
KroNI GCCGGC 1 cut(s) 367
Kzo9I GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
LmnI GCTCC 1 cut(s) 321
Lsp1109I GCAGC 1 cut(s) 200
LweI GCATC 2 cut(s) 13, 314
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 2 cut(s) 426, 505
MalI GATC 8 cut(s) 97, 104, 207, 212, 232, 241, 402, 413
MboI GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
MboII GAAGA 1 cut(s) 272
MflI RGATCY 2 cut(s) 95, 230
MhlI GDGCHC 2 cut(s) 26, 151
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 4 cut(s) 244, 249, 283, 289
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 365
MseI TTAA 3 cut(s) 227, 590, 597
MslI CAYNNNNRTG 1 cut(s) 154
MspI CCGG 4 cut(s) 319, 366, 435, 538
MspR9I CCNGG 1 cut(s) 435
MvnI CGCG 3 cut(s) 193, 288, 333
MwoI GCNNNNNNNGC 4 cut(s) 53, 273, 333, 448
NaeI GCCGGC 1 cut(s) 367
NciI CCSGG 1 cut(s) 435
NdeII GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
NgoMIV GCCGGC 1 cut(s) 365
NlaIII CATG 2 cut(s) 460, 606
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 47
PdiI GCCGGC 1 cut(s) 367
PkrI GCNGC 4 cut(s) 19, 190, 195, 335
Ppu21I YACGTR 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 2 cut(s) 95, 230
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 227, 590, 597
SatI GCNGC 4 cut(s) 18, 189, 194, 334
Sau3AI GATC 8 cut(s) 95, 102, 205, 210, 230, 239, 400, 411
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 2 cut(s) 26, 151
SetI ASST 5 cut(s) 255, 260, 424, 495, 557
SfaNI GCATC 2 cut(s) 13, 314
SfiI GGCCNNNNNGGCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 5 cut(s) 17, 127, 193, 333, 581
SspMI CTAG 1 cut(s) 197
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 433
TaiI ACGT 1 cut(s) 424
TaqI TCGA 2 cut(s) 204, 238
TasI AATT 1 cut(s) 80
TauI GCSGC 3 cut(s) 20, 196, 336
Tru1I TTAA 3 cut(s) 227, 590, 597
Tru9I TTAA 3 cut(s) 227, 590, 597
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 188
TspRI CASTG 1 cut(s) 156
VneI GTGCAC 1 cut(s) 147
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.