RchiOBHm_Chr2g0120321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000267
Physical Location & Seq
Forward (+)
33046164 .. 33047294
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49294

Sequence Viewer

Length: 324 bp
ATGATTGGCTCTGTTGCCCCTGTGATGGGGTTGAGCAAAGTTGACGGAGGTCGTGGTGATCGATCTGGTATTGGATCTGATTTTGTCGTGAAATCGGAGTCCAAGGCAATCCGCCTAGCGAAGTCTTTTGGCGGTCAAGAAGCGGTGAGGCGACAGGATCCGCTGGTGGTTGAGACACAGTCCCGGAAGCACCGATGGGTACCCAACCCGCCCGGCAAGCTTGCTGGGATGTGGATTGTTGGGCTGGCCCCAGCCTCTTGGGCCCTTTCTGGTGGGCTGCAGACTTTTTTTATTTACGTAATAAGTGTTTTTTCTTTTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.48

Weight (kDa)

10.35

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AciI CCGC 5 cut(s) 112, 132, 143, 161, 209
AclWI GGATC 3 cut(s) 82, 152, 165
AfaI GTAC 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 25, 26
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 82, 152, 165
AoxI GGCC 2 cut(s) 246, 261
ApaI GGGCCC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 277
Asp718I GGTACC 1 cut(s) 199
AspS9I GGNCC 3 cut(s) 247, 261, 262
AsuC2I CCSGG 2 cut(s) 184, 213
AsuHPI GGTGA 2 cut(s) 68, 157
BaeGI GKGCMC 1 cut(s) 265
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 264
BccI CCATC 2 cut(s) 19, 189
BcnI CCSGG 2 cut(s) 184, 213
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 278
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 2 cut(s) 184, 213
BmgT120I GGNCC 3 cut(s) 247, 261, 262
BmiI GGNNCC 4 cut(s) 159, 201, 249, 263
BmrFI CCNGG 2 cut(s) 184, 213
BoxI GACNNNNGTC 1 cut(s) 48
BpuMI CCSGG 2 cut(s) 184, 213
Bsa29I ATCGAT 1 cut(s) 61
BsaAI YACGTR 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 26
BseCI ATCGAT 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 25, 26
BseSI GKGCMC 1 cut(s) 265
BseXI GCAGC 1 cut(s) 264
BseYI CCCAGC 2 cut(s) 224, 250
BshFI GGCC 2 cut(s) 248, 263
BshNI GGYRCC 1 cut(s) 199
BshVI ATCGAT 1 cut(s) 61
BsiSI CCGG 2 cut(s) 184, 213
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 25, 26
BsmAI GTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 2 cut(s) 248, 263
Bsp120I GGGCCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 4 cut(s) 58, 62, 74, 157
BspACI CCGC 5 cut(s) 112, 132, 143, 161, 209
BspANI GGCC 2 cut(s) 248, 263
BspDI ATCGAT 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 159, 201, 249, 263
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 3 cut(s) 82, 152, 165
BspT107I GGYRCC 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 58, 62, 74, 157
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 180
BstBAI YACGTR 1 cut(s) 298
BstC8I GCNNGC 3 cut(s) 218, 222, 246
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 4 cut(s) 61, 65, 77, 160
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 58, 62, 74, 157
BstMWI GCNNNNNNNGC 2 cut(s) 217, 260
BstPAI GACNNNNGTC 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 182, 211
BstSFI CTRYAG 1 cut(s) 278
BstSLI GKGCMC 1 cut(s) 265
BstSNI TACGTA 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 74, 157
BstXI CCANNNNNNTGG 1 cut(s) 258
BstYI RGATCY 2 cut(s) 74, 157
Bsu15I ATCGAT 1 cut(s) 61
BsuRI GGCC 2 cut(s) 248, 263
BsuTUI ATCGAT 1 cut(s) 61
BtsCI GGATG 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 218, 222, 246
Cfr13I GGNCC 3 cut(s) 247, 261, 262
ClaI ATCGAT 1 cut(s) 61
Csp6I GTAC 1 cut(s) 200
CviJI RGCY 7 cut(s) 9, 220, 244, 248, 254, 263, 277
CviKI_1 RGCY 7 cut(s) 9, 220, 244, 248, 254, 263, 277
CviQI GTAC 1 cut(s) 200
DpnI GATC 4 cut(s) 60, 64, 76, 159
DpnII GATC 4 cut(s) 58, 62, 74, 157
EciI GGCGGA 1 cut(s) 101
Eco105I TACGTA 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 102
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 1 cut(s) 320
FaqI GGGAC 1 cut(s) 166
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 278
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 278
GsaI CCCAGC 2 cut(s) 228, 254
HaeIII GGCC 2 cut(s) 248, 263
HapII CCGG 2 cut(s) 184, 213
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 98
HpaII CCGG 2 cut(s) 184, 213
HphI GGTGA 2 cut(s) 68, 157
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 79, 97
Hpy188III TCNNGA 2 cut(s) 88, 137
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 260
HpySE526I ACGT 1 cut(s) 297
KpnI GGTACC 1 cut(s) 203
Kzo9I GATC 4 cut(s) 58, 62, 74, 157
Lsp1109I GCAGC 1 cut(s) 264
MaeI CTAG 1 cut(s) 116
MaeII ACGT 1 cut(s) 297
MalI GATC 4 cut(s) 60, 64, 76, 159
MboI GATC 4 cut(s) 58, 62, 74, 157
MflI RGATCY 2 cut(s) 74, 157
MhlI GDGCHC 1 cut(s) 265
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 3 cut(s) 41, 141, 265
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 184, 213
MspR9I CCNGG 2 cut(s) 184, 213
MwoI GCNNNNNNNGC 2 cut(s) 217, 260
NciI CCSGG 2 cut(s) 184, 213
NdeII GATC 4 cut(s) 58, 62, 74, 157
NlaIV GGNNCC 4 cut(s) 159, 201, 249, 263
PcsI WCGNNNNNNNCGW 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 178
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 1 cut(s) 279
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 298
PshAI GACNNNNGTC 1 cut(s) 48
PspFI CCCAGC 2 cut(s) 224, 250
PspN4I GGNNCC 4 cut(s) 159, 201, 249, 263
PspOMI GGGCCC 1 cut(s) 261
PspPI GGNCC 3 cut(s) 247, 261, 262
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 2 cut(s) 74, 157
PsyI GACNNNGTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 201
RsaNI GTAC 1 cut(s) 200
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 4 cut(s) 58, 62, 74, 157
Sau96I GGNCC 3 cut(s) 247, 261, 262
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 2 cut(s) 184, 213
SduI GDGCHC 1 cut(s) 265
SetI ASST 3 cut(s) 52, 222, 300
SfcI CTRYAG 1 cut(s) 278
SnaBI TACGTA 1 cut(s) 298
SsiI CCGC 5 cut(s) 112, 132, 143, 161, 209
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 2 cut(s) 182, 211
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 180
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 61
TseI GCWGC 1 cut(s) 277
TspGWI ACGGA 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 178
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.