Rmu_sc0001971.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001971.1
OG0000267
Physical Location & Seq
Forward (+)
22282 .. 23829
1548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001971.1_g000008.1.cds

Sequence Viewer

Length: 813 bp
atggatgggtgtcggggccgatgtcgcctgaccataggaagaagtgtggaatttttgcggaggtgtgccgggatcggagacagcctgagggtggtgactggacggctgcgtagctgcaattctctggtggtggatcagatcgattggactagatcttatcagttcggatcgataactgggtgggatgttctggctctgatctctggaaacgtggggtggctagccggaaggtggatgttggtgctgctgccggtggatggtctacagggaaggcgcaggcaggttgtcagttctgctcctgatctcggcttggggcgtagtgggctttatcccggtatgcgaactttgtgtgccttgtctggcctagcgaggcggcgagctatttgcttgatcaaatggacgcaacctccaattgacagaatgaaattgagtgtcgccggatttatttttgtgtggaaacatagtgggaaaactgtactatttgtaatgatgcttcttcgtgatagagttatctttctagtgctatcaatctggccttctggtttgcagcaagtgctaggcggtggtaggtgtggtgatagaggccagctgacggaggaagtgccaaccaagaggtctggggcaccgagacttggccggatttgctgcgccaaggtcgggttcgactggatgcttgcttgctgggccatgcgtactccggcggtgcagggctggagttggctcggctgtgcagagcaggaggcagctaggctagaggctagtcaggaggaggctcgtgtggagaggttgattaggatctggcctcaggtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.09

Weight (kDa)

10.39

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 622
AccI GTMKAC 1 cut(s) 262
AciI CCGC 4 cut(s) 58, 373, 561, 701
AclWI GGATC 4 cut(s) 80, 141, 175, 803
AcoI YGGCCR 1 cut(s) 634
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 2 cut(s) 477, 694
AfiI CCNNNNNNNGG 7 cut(s) 91, 231, 257, 305, 592, 632, 657
AjuI GAANNNNNNNTTGG 2 cut(s) 644, 676
AluBI AGCT 4 cut(s) 114, 380, 589, 746
AluI AGCT 4 cut(s) 114, 380, 589, 746
Alw26I GTCTC 2 cut(s) 72, 622
AlwI GGATC 4 cut(s) 80, 141, 175, 803
AoxI GGCC 7 cut(s) 16, 361, 533, 583, 634, 684, 800
ApeKI GCWGC 7 cut(s) 106, 114, 244, 247, 547, 645, 743
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 2 cut(s) 276, 650
AspS9I GGNCC 2 cut(s) 16, 684
AsuC2I CCSGG 2 cut(s) 70, 333
AsuHPI GGTGA 2 cut(s) 106, 587
AsuNHI GCTAGC 1 cut(s) 220
AxyI CCTNAGG 2 cut(s) 86, 804
BaeGI GKGCMC 1 cut(s) 625
BanI GGYRCC 1 cut(s) 622
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BauI CACGAG 1 cut(s) 774
BbvI GCAGC 7 cut(s) 93, 101, 231, 234, 559, 632, 755
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BclI TGATCA 1 cut(s) 390
BcnI CCSGG 2 cut(s) 70, 333
BcoDI GTCTC 2 cut(s) 72, 622
BfaI CTAG 8 cut(s) 150, 221, 365, 518, 557, 747, 752, 759
BfmI CTRYAG 1 cut(s) 263
BfuAI ACCTGC 1 cut(s) 271
BglII AGATCT 1 cut(s) 152
BisI GCNGC 8 cut(s) 107, 115, 245, 248, 374, 548, 646, 744
BlsI GCNGC 8 cut(s) 108, 116, 246, 249, 375, 549, 647, 745
Bme1390I CCNGG 2 cut(s) 70, 333
BmgT120I GGNCC 2 cut(s) 16, 684
BmiI GGNNCC 2 cut(s) 17, 624
BmrFI CCNGG 2 cut(s) 70, 333
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 2 cut(s) 480, 660
BmtI GCTAGC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 733
BpuMI CCSGG 2 cut(s) 70, 333
Bsa29I ATCGAT 2 cut(s) 141, 170
BsaBI GATNNNNATC 1 cut(s) 794
BsaJI CCNNGG 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 7 cut(s) 91, 231, 257, 305, 592, 632, 657
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 103, 181, 671
Bse21I CCTNAGG 2 cut(s) 86, 804
Bse8I GATNNNNATC 1 cut(s) 794
BseCI ATCGAT 2 cut(s) 141, 170
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 5 cut(s) 10, 190, 240, 262, 675
BseJI GATNNNNATC 1 cut(s) 794
BseLI CCNNNNNNNGG 7 cut(s) 91, 231, 257, 305, 592, 632, 657
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 3 cut(s) 103, 181, 671
BseRI GAGGAG 1 cut(s) 782
BseSI GKGCMC 1 cut(s) 625
BseXI GCAGC 7 cut(s) 93, 101, 231, 234, 559, 632, 755
BseYI CCCAGC 1 cut(s) 681
BsgI GTGCAG 2 cut(s) 725, 750
BshFI GGCC 7 cut(s) 18, 363, 535, 585, 636, 686, 802
BshNI GGYRCC 1 cut(s) 622
BshVI ATCGAT 2 cut(s) 141, 170
BsiSI CCGG 7 cut(s) 69, 225, 251, 333, 438, 637, 698
BslI CCNNNNNNNGG 7 cut(s) 91, 231, 257, 305, 592, 632, 657
BsmAI GTCTC 2 cut(s) 72, 622
BsnI GGCC 7 cut(s) 18, 363, 535, 585, 636, 686, 802
Bsp1286I GDGCHC 1 cut(s) 625
Bsp143I GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
BspACI CCGC 4 cut(s) 58, 373, 561, 701
BspANI GGCC 7 cut(s) 18, 363, 535, 585, 636, 686, 802
BspCNI CTCAG 1 cut(s) 78
BspDI ATCGAT 2 cut(s) 141, 170
BspLI GGNNCC 2 cut(s) 17, 624
BspMI ACCTGC 1 cut(s) 271
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 4 cut(s) 80, 141, 175, 803
BspT107I GGYRCC 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 3 cut(s) 103, 181, 671
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
BssSI CACGAG 1 cut(s) 774
BssT1I CCWWGG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 774
Bst4CI ACNGT 1 cut(s) 475
BstAPI GCANNNNNTGC 1 cut(s) 553
BstC8I GCNNGC 6 cut(s) 222, 278, 378, 587, 675, 679
BstDEI CTNAG 2 cut(s) 86, 804
BstF5I GGATG 5 cut(s) 10, 190, 240, 262, 675
BstHHI GCGC 2 cut(s) 276, 650
BstKTI GATC 9 cut(s) 75, 136, 141, 155, 170, 201, 304, 393, 798
BstMAI GTCTC 2 cut(s) 72, 622
BstMBI GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
BstMWI GCNNNNNNNGC 5 cut(s) 24, 322, 553, 642, 683
BstSCI CCNGG 2 cut(s) 68, 331
BstSFI CTRYAG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 625
BstV1I GCAGC 7 cut(s) 93, 101, 231, 234, 559, 632, 755
BstX2I RGATCY 2 cut(s) 152, 795
BstYI RGATCY 2 cut(s) 152, 795
Bsu15I ATCGAT 2 cut(s) 141, 170
Bsu36I CCTNAGG 2 cut(s) 86, 804
BsuRI GGCC 7 cut(s) 18, 363, 535, 585, 636, 686, 802
BsuTUI ATCGAT 2 cut(s) 141, 170
BtsCI GGATG 5 cut(s) 10, 190, 240, 262, 675
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 6 cut(s) 222, 278, 378, 587, 675, 679
CfoI GCGC 2 cut(s) 276, 650
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 16, 684
ClaI ATCGAT 2 cut(s) 141, 170
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 476, 693
CviAII CATG 1 cut(s) 688
CviQI GTAC 2 cut(s) 476, 693
DdeI CTNAG 2 cut(s) 86, 804
DpnI GATC 9 cut(s) 74, 135, 140, 154, 169, 200, 303, 392, 797
DpnII GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
EaeI YGGCCR 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 651
Eco81I CCTNAGG 2 cut(s) 86, 804
EcoT14I CCWWGG 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 651
FaeI CATG 1 cut(s) 691
FaiI YATR 4 cut(s) 35, 338, 462, 689
FatI CATG 1 cut(s) 687
FbaI TGATCA 1 cut(s) 390
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 8 cut(s) 107, 115, 245, 248, 374, 548, 646, 744
FokI GGATG 5 cut(s) 17, 197, 247, 269, 682
Fsp4HI GCNGC 8 cut(s) 107, 115, 245, 248, 374, 548, 646, 744
FspBI CTAG 8 cut(s) 150, 221, 365, 518, 557, 747, 752, 759
GlaI GCGC 2 cut(s) 275, 649
GluI GCNGC 8 cut(s) 107, 115, 245, 248, 374, 548, 646, 744
GsaI CCCAGC 1 cut(s) 685
GsuI CTGGAG 1 cut(s) 733
HaeIII GGCC 7 cut(s) 18, 363, 535, 585, 636, 686, 802
HapII CCGG 7 cut(s) 69, 225, 251, 333, 438, 637, 698
HgaI GACGC 1 cut(s) 409
HhaI GCGC 2 cut(s) 276, 650
Hin1II CATG 1 cut(s) 691
Hin6I GCGC 2 cut(s) 274, 648
HinP1I GCGC 2 cut(s) 274, 648
HpaII CCGG 7 cut(s) 69, 225, 251, 333, 438, 637, 698
HphI GGTGA 2 cut(s) 106, 587
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 5 cut(s) 77, 138, 167, 198, 812
Hpy188III TCNNGA 4 cut(s) 204, 299, 500, 764
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 222, 264, 546
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 4 cut(s) 117, 547, 706, 731
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 322, 553, 642, 683
HpyF3I CTNAG 2 cut(s) 86, 804
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 1 cut(s) 691
HspAI GCGC 2 cut(s) 274, 648
Ksp22I TGATCA 1 cut(s) 390
Kzo9I GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 7 cut(s) 93, 101, 231, 234, 559, 632, 755
LweI GCATC 2 cut(s) 480, 660
MaeI CTAG 8 cut(s) 150, 221, 365, 518, 557, 747, 752, 759
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 94
MalI GATC 9 cut(s) 74, 135, 140, 154, 169, 200, 303, 392, 797
MboI GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
MboII GAAGA 2 cut(s) 51, 488
MfeI CAATTG 1 cut(s) 411
MflI RGATCY 2 cut(s) 152, 795
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 4 cut(s) 50, 118, 411, 425
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 7 cut(s) 69, 225, 251, 333, 438, 637, 698
MspR9I CCNGG 2 cut(s) 70, 333
MunI CAATTG 1 cut(s) 411
MwoI GCNNNNNNNGC 5 cut(s) 24, 322, 553, 642, 683
NciI CCSGG 2 cut(s) 70, 333
NdeII GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 691
NlaIV GGNNCC 2 cut(s) 17, 624
NmeAIII GCCGAG 2 cut(s) 285, 702
NmuCI GTSAC 1 cut(s) 94
PkrI GCNGC 8 cut(s) 108, 116, 246, 249, 375, 549, 647, 745
PspFI CCCAGC 1 cut(s) 681
PspN4I GGNNCC 2 cut(s) 17, 624
PspPI GGNCC 2 cut(s) 16, 684
PsuI RGATCY 2 cut(s) 152, 795
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 2 cut(s) 477, 694
RsaNI GTAC 2 cut(s) 476, 693
SatI GCNGC 8 cut(s) 107, 115, 245, 248, 374, 548, 646, 744
Sau3AI GATC 9 cut(s) 72, 133, 138, 152, 167, 198, 301, 390, 795
Sau96I GGNCC 2 cut(s) 16, 684
ScrFI CCNGG 2 cut(s) 70, 333
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 2 cut(s) 480, 660
SfcI CTRYAG 1 cut(s) 263
Sse9I AATT 4 cut(s) 50, 118, 411, 425
SsiI CCGC 4 cut(s) 58, 373, 561, 701
SspMI CTAG 8 cut(s) 150, 221, 365, 518, 557, 747, 752, 759
StyD4I CCNGG 2 cut(s) 68, 331
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 1 cut(s) 213
TaqI TCGA 3 cut(s) 141, 170, 663
TasI AATT 4 cut(s) 50, 118, 411, 425
TatI WGTACW 1 cut(s) 475
TauI GCSGC 1 cut(s) 376
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 7 cut(s) 106, 114, 244, 247, 547, 645, 743
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 437
TspGWI ACGGA 1 cut(s) 608
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 262
XspI CTAG 8 cut(s) 150, 221, 365, 518, 557, 747, 752, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.