Rmu_sc0005120.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005120.1
OG0000267
Physical Location & Seq
Reverse (-)
25601 .. 27400
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005120.1_g000007.1.cds

Sequence Viewer

Length: 762 bp
atgggggttgggaggccttcctttgcattgctttcagttggcggcggtggttgcataggaggtgggtgcgtggcaaagggtgatcacgtggagtttgggtgtgatgtggtttcggatctcataacagcaggtggcggagggagtcacagactcacagcgcagggatcgtggtgtctattcgacaaccgtctagttctgaaagcagtggcacggtggtctgagaggtgcaatggtggtggctgggctggatgtgcaaacattgtcgtgggctggggtcgatgcttggaccctcccagctttgctccaaatgtgggccttttctgggccttgtggtgcttgagcctggggttttaccctaggtccattatggtttggctagtcgagcttatcgcatgtgtgtgcactcaacgtgccttgtctgctctaggaaggcggcaagttgcttgcttcgtcaaatggtcgttgccgcctagtggtagggtgaagctaagtgtcgtcggatttatccttcggcgacaacatagtaggaaagctgtgcaattgccgacgttgagtgcagcggcattggtttctggagggggcgaacagcttggcgaaggaaagttgcttgtgtttggctgccattggctctcggctggggaggccacccaactgaggcggtggtgcagcgactccagcggtgtcgctaggggttcggttcaggctggtccaggtacaaggatgagggtagggggagtgggttgggcttttagcctcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

26.55

Weight (kDa)

9.55

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 119
AciI CCGC 8 cut(s) 42, 45, 135, 433, 467, 560, 658, 678
AclWI GGATC 2 cut(s) 123, 172
AcvI CACGTG 1 cut(s) 88
AfaI GTAC 1 cut(s) 715
AfiI CCNNNNNNNGG 4 cut(s) 311, 322, 473, 654
AjnI CCWGG 2 cut(s) 342, 709
AluBI AGCT 6 cut(s) 297, 385, 487, 533, 589, 759
AluI AGCT 6 cut(s) 297, 385, 487, 533, 589, 759
Alw21I GWGCWC 1 cut(s) 404
Alw44I GTGCAC 1 cut(s) 400
AlwI GGATC 2 cut(s) 123, 172
AoxI GGCC 4 cut(s) 14, 313, 324, 642
ApaLI GTGCAC 1 cut(s) 400
ApeKI GCWGC 3 cut(s) 557, 618, 666
AspA2I CCTAGG 1 cut(s) 356
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 5 cut(s) 286, 313, 324, 360, 707
AsuHPI GGTGA 2 cut(s) 92, 493
AvaII GGWCC 3 cut(s) 286, 360, 707
AvrII CCTAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 404
BbrPI CACGTG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 755
BbvI GCAGC 3 cut(s) 569, 605, 678
BciT130I CCWGG 2 cut(s) 344, 711
BclI TGATCA 1 cut(s) 82
BfaI CTAG 7 cut(s) 191, 357, 377, 425, 471, 687, 760
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 7 cut(s) 43, 434, 467, 558, 561, 619, 667
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 7 cut(s) 44, 435, 468, 559, 562, 620, 668
Bme1390I CCNGG 2 cut(s) 344, 711
Bme18I GGWCC 3 cut(s) 286, 360, 707
BmgT120I GGNCC 5 cut(s) 286, 313, 324, 360, 707
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 2 cut(s) 344, 711
BmsI GCATC 1 cut(s) 269
BoxI GACNNNNGTC 1 cut(s) 186
BpmI CTGGAG 2 cut(s) 594, 658
Bpu10I CCTNAGC 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 358
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 343, 356
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 4 cut(s) 311, 322, 473, 654
Bse3DI GCAATG 2 cut(s) 26, 235
BseBI CCWGG 2 cut(s) 344, 711
BseDI CCNNGG 2 cut(s) 343, 356
BseGI GGATG 2 cut(s) 254, 726
BseLI CCNNNNNNNGG 4 cut(s) 311, 322, 473, 654
BseMI GCAATG 2 cut(s) 26, 235
BseMII CTCAG 2 cut(s) 210, 644
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 3 cut(s) 569, 605, 678
BseYI CCCAGC 4 cut(s) 240, 270, 293, 635
BsgI GTGCAG 2 cut(s) 576, 685
BshFI GGCC 4 cut(s) 16, 315, 326, 644
BsiHKAI GWGCWC 1 cut(s) 404
BslI CCNNNNNNNGG 4 cut(s) 311, 322, 473, 654
BsnI GGCC 4 cut(s) 16, 315, 326, 644
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 3 cut(s) 82, 115, 164
BspACI CCGC 8 cut(s) 42, 45, 135, 433, 467, 560, 658, 678
BspANI GGCC 4 cut(s) 16, 315, 326, 644
BspCNI CTCAG 2 cut(s) 211, 645
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 2 cut(s) 123, 172
BsrDI GCAATG 2 cut(s) 26, 235
BssECI CCNNGG 2 cut(s) 343, 356
BssMI GATC 3 cut(s) 82, 115, 164
BssT1I CCWWGG 1 cut(s) 356
Bst2UI CCWGG 2 cut(s) 344, 711
Bst4CI ACNGT 2 cut(s) 188, 213
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 445
BstDEI CTNAG 4 cut(s) 219, 488, 653, 755
BstF5I GGATG 2 cut(s) 254, 726
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 3 cut(s) 85, 118, 167
BstMBI GATC 3 cut(s) 82, 115, 164
BstMWI GCNNNNNNNGC 6 cut(s) 51, 251, 382, 419, 641, 675
BstNI CCWGG 2 cut(s) 344, 711
BstNSI RCATGY 1 cut(s) 396
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 342, 709
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 3 cut(s) 569, 605, 678
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 4 cut(s) 16, 315, 326, 644
BtsCI GGATG 2 cut(s) 254, 726
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 119
Cac8I GCNNGC 1 cut(s) 445
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 5 cut(s) 286, 313, 324, 360, 707
Csp6I GTAC 1 cut(s) 714
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 1 cut(s) 393
CviQI GTAC 1 cut(s) 714
DdeI CTNAG 4 cut(s) 219, 488, 653, 755
DpnI GATC 3 cut(s) 84, 117, 166
DpnII GATC 3 cut(s) 82, 115, 164
EciI GGCGGA 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 356
Eco147I AGGCCT 1 cut(s) 16
Eco47I GGWCC 3 cut(s) 286, 360, 707
Eco72I CACGTG 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 342, 709
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 1 cut(s) 396
FaiI YATR 5 cut(s) 56, 122, 368, 394, 522
FatI CATG 1 cut(s) 392
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 7 cut(s) 43, 434, 467, 558, 561, 619, 667
FokI GGATG 2 cut(s) 261, 733
Fsp4HI GCNGC 7 cut(s) 43, 434, 467, 558, 561, 619, 667
FspBI CTAG 7 cut(s) 191, 357, 377, 425, 471, 687, 760
GlaI GCGC 1 cut(s) 159
GluI GCNGC 7 cut(s) 43, 434, 467, 558, 561, 619, 667
GsaI CCCAGC 4 cut(s) 244, 274, 297, 639
GsuI CTGGAG 2 cut(s) 594, 658
HaeIII GGCC 4 cut(s) 16, 315, 326, 644
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 396
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 3 cut(s) 142, 150, 671
HphI GGTGA 2 cut(s) 92, 493
Hpy166II GTNNAC 1 cut(s) 402
Hpy188I TCNGA 4 cut(s) 115, 198, 220, 500
Hpy188III TCNNGA 1 cut(s) 573
Hpy8I GTNNAC 1 cut(s) 402
Hpy99I CGWCG 2 cut(s) 500, 550
HpyAV CCTTC 4 cut(s) 27, 423, 518, 590
HpyCH4III ACNGT 2 cut(s) 188, 213
HpyCH4IV ACGT 3 cut(s) 87, 409, 548
HpyCH4V TGCA 8 cut(s) 26, 54, 228, 254, 402, 538, 557, 666
HpyF10VI GCNNNNNNNGC 6 cut(s) 51, 251, 382, 419, 641, 675
HpyF3I CTNAG 4 cut(s) 219, 488, 653, 755
HpySE526I ACGT 3 cut(s) 87, 409, 548
Hsp92II CATG 1 cut(s) 396
HspAI GCGC 1 cut(s) 158
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 82, 115, 164
LmnI GCTCC 1 cut(s) 307
Lsp1109I GCAGC 3 cut(s) 569, 605, 678
LweI GCATC 1 cut(s) 269
MaeI CTAG 7 cut(s) 191, 357, 377, 425, 471, 687, 760
MaeII ACGT 3 cut(s) 87, 409, 548
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 84, 117, 166
MboI GATC 3 cut(s) 82, 115, 164
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 1 cut(s) 539
MlyI GAGTC 3 cut(s) 144, 151, 665
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 9 cut(s) 6, 53, 131, 216, 300, 569, 634, 648, 717
MslI CAYNNNNRTG 2 cut(s) 263, 397
MspA1I CMGCKG 2 cut(s) 560, 678
MspR9I CCNGG 2 cut(s) 344, 711
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 2 cut(s) 344, 711
MwoI GCNNNNNNNGC 6 cut(s) 51, 251, 382, 419, 641, 675
NdeII GATC 3 cut(s) 82, 115, 164
NlaIII CATG 1 cut(s) 396
NlaIV GGNNCC 1 cut(s) 288
NmeAIII GCCGAG 1 cut(s) 611
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 396
PaqCI CACCTGC 1 cut(s) 119
PceI AGGCCT 1 cut(s) 16
PkrI GCNGC 7 cut(s) 44, 435, 468, 559, 562, 620, 668
PleI GAGTC 3 cut(s) 144, 150, 665
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
PpsI GAGTC 3 cut(s) 144, 150, 665
Ppu21I YACGTR 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 186
Psp6I CCWGG 2 cut(s) 342, 709
PspCI CACGTG 1 cut(s) 88
PspFI CCCAGC 4 cut(s) 240, 270, 293, 635
PspGI CCWGG 2 cut(s) 342, 709
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 5 cut(s) 286, 313, 324, 360, 707
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 715
RsaNI GTAC 1 cut(s) 714
RseI CAYNNNNRTG 2 cut(s) 263, 397
SatI GCNGC 7 cut(s) 43, 434, 467, 558, 561, 619, 667
Sau3AI GATC 3 cut(s) 82, 115, 164
Sau96I GGNCC 5 cut(s) 286, 313, 324, 360, 707
SchI GAGTC 3 cut(s) 144, 151, 665
ScrFI CCNGG 2 cut(s) 344, 711
SduI GDGCHC 1 cut(s) 404
SfaNI GCATC 1 cut(s) 269
SinI GGWCC 3 cut(s) 286, 360, 707
SmiMI CAYNNNNRTG 2 cut(s) 263, 397
SmlI CTYRAG 1 cut(s) 337
SmoI CTYRAG 1 cut(s) 337
Sse9I AATT 1 cut(s) 539
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 8 cut(s) 42, 45, 135, 433, 467, 560, 658, 678
SspMI CTAG 7 cut(s) 191, 357, 377, 425, 471, 687, 760
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 342, 709
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 188, 213
TaiI ACGT 3 cut(s) 90, 412, 551
TaqI TCGA 3 cut(s) 180, 277, 381
TasI AATT 1 cut(s) 539
TauI GCSGC 4 cut(s) 45, 436, 469, 563
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 3 cut(s) 557, 618, 666
Tsp45I GTSAC 1 cut(s) 143
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 400
VpaK11BI GGWCC 3 cut(s) 286, 360, 707
XceI RCATGY 1 cut(s) 396
XmaJI CCTAGG 1 cut(s) 356
XspI CTAG 7 cut(s) 191, 357, 377, 425, 471, 687, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.