Rh3DG183400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000267
Physical Location & Seq
Forward (+)
16244111 .. 16244371
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG183400.1

Sequence Viewer

Length: 261 bp
ATGGCCGGCGGCGAACCATGGAGGCTCAGGAGGCAGTTTCGATCTGGATTCGGGTGGATTTGGGTCCGATCTGGGTTTGGGGTTGGACGGGGGTCTGCAGGTGTGACTCCGTGTTGTTTCTTGGGCAGTTGGAGTGGCTCTGGGACACGGATGGCCGGCGGCGAACCGTGGATGCTCTGCGGCAACTGGGGGCTGGGGGACGGTCGTTGCGATCCCGATCTGGTCGGTTATGGATCGGGTTGTGGGCACCGATTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.1

Weight (kDa)

9.13

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 89
Acc36I ACCTGC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 246
AciI CCGC 3 cut(s) 9, 159, 180
AclWI GGATC 2 cut(s) 206, 241
AcoI YGGCCR 2 cut(s) 3, 153
AlwI GGATC 2 cut(s) 206, 241
AoxI GGCC 2 cut(s) 3, 153
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 246
BccI CCATC 1 cut(s) 145
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 10, 160, 181
BlsI GCNGC 3 cut(s) 11, 161, 182
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 2 cut(s) 65, 248
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 26
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 17, 167
Bse118I RCCGGY 2 cut(s) 5, 155
Bse1I ACTGG 1 cut(s) 191
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 17, 167
BseGI GGATG 2 cut(s) 156, 177
BseJI GATNNNNATC 1 cut(s) 216
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 5, 155
BshNI GGYRCC 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 2 cut(s) 6, 156
BslFI GGGAC 2 cut(s) 157, 212
BsmFI GGGAC 2 cut(s) 157, 212
BsnI GGCC 2 cut(s) 5, 155
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 5 cut(s) 41, 68, 211, 217, 233
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 3 cut(s) 9, 159, 180
BspANI GGCC 2 cut(s) 5, 155
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 65, 248
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 1 cut(s) 89
BspPI GGATC 2 cut(s) 206, 241
BspT107I GGYRCC 1 cut(s) 246
BsrFI RCCGGY 2 cut(s) 5, 155
BsrI ACTGG 1 cut(s) 191
BssAI RCCGGY 2 cut(s) 5, 155
BssECI CCNNGG 2 cut(s) 17, 167
BssMI GATC 5 cut(s) 41, 68, 211, 217, 233
BssT1I CCWWGG 1 cut(s) 17
Bst4CI ACNGT 2 cut(s) 168, 203
BstC8I GCNNGC 2 cut(s) 7, 157
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 2 cut(s) 17, 167
BstF5I GGATG 2 cut(s) 156, 177
BstKTI GATC 5 cut(s) 44, 71, 214, 220, 236
BstMBI GATC 5 cut(s) 41, 68, 211, 217, 233
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstPAI GACNNNNGTC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 96
BstSLI GKGCMC 1 cut(s) 249
BsuRI GGCC 2 cut(s) 5, 155
BtgI CCRYGG 2 cut(s) 17, 167
BtsCI GGATG 2 cut(s) 156, 177
BveI ACCTGC 1 cut(s) 89
Cac8I GCNNGC 2 cut(s) 7, 157
Cfr10I RCCGGY 2 cut(s) 5, 155
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 1 cut(s) 18
CviJI RGCY 5 cut(s) 5, 25, 138, 155, 193
CviKI_1 RGCY 5 cut(s) 5, 25, 138, 155, 193
DdeI CTNAG 1 cut(s) 26
DpnI GATC 5 cut(s) 43, 70, 213, 219, 235
DpnII GATC 5 cut(s) 41, 68, 211, 217, 233
EaeI YGGCCR 2 cut(s) 3, 153
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 231
FaqI GGGAC 2 cut(s) 157, 212
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 10, 160, 181
FokI GGATG 2 cut(s) 163, 184
Fsp4HI GCNGC 3 cut(s) 10, 160, 181
GluI GCNGC 3 cut(s) 10, 160, 181
GsaI CCCAGC 1 cut(s) 197
HaeIII GGCC 2 cut(s) 5, 155
HapII CCGG 2 cut(s) 6, 156
Hin1II CATG 1 cut(s) 21
HinfI GANTC 2 cut(s) 48, 106
HpaII CCGG 2 cut(s) 6, 156
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 28, 45, 215
HpyCH4III ACNGT 2 cut(s) 168, 203
HpyCH4V TGCA 1 cut(s) 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 1 cut(s) 26
Hsp92II CATG 1 cut(s) 21
KroI GCCGGC 2 cut(s) 5, 155
KroNI GCCGGC 2 cut(s) 7, 157
Kzo9I GATC 5 cut(s) 41, 68, 211, 217, 233
LweI GCATC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 43, 70, 213, 219, 235
MboI GATC 5 cut(s) 41, 68, 211, 217, 233
MhlI GDGCHC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 64, 110
MnlI CCTC 2 cut(s) 15, 24
MroNI GCCGGC 2 cut(s) 5, 155
MspI CCGG 2 cut(s) 6, 156
MwoI GCNNNNNNNGC 1 cut(s) 31
NaeI GCCGGC 2 cut(s) 7, 157
NcoI CCATGG 1 cut(s) 17
NdeII GATC 5 cut(s) 41, 68, 211, 217, 233
NgoMIV GCCGGC 2 cut(s) 5, 155
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 65, 248
NmuCI GTSAC 1 cut(s) 103
PaqCI CACCTGC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdiI GCCGGC 2 cut(s) 7, 157
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 11, 161, 182
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PshAI GACNNNNGTC 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 65, 248
PspPI GGNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 100
SatI GCNGC 3 cut(s) 10, 160, 181
Sau3AI GATC 5 cut(s) 41, 68, 211, 217, 233
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 1 cut(s) 100
SduI GDGCHC 1 cut(s) 249
SetI ASST 1 cut(s) 103
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 64
SsiI CCGC 3 cut(s) 9, 159, 180
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 168, 203
TaqI TCGA 1 cut(s) 40
TauI GCSGC 3 cut(s) 12, 162, 183
TfiI GAWTC 1 cut(s) 48
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspGWI ACGGA 2 cut(s) 99, 163
VpaK11BI GGWCC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.