Rmu_sc0002105.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002105.1
OG0000267
Physical Location & Seq
Reverse (-)
15509 .. 16387
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002105.1_g000002.1.cds

Sequence Viewer

Length: 879 bp
atggtgctgagaacgcgttccagatctgttggaggccgtgccggggaagggcagcgtcgggcaggagatgggcgtgggatgctggagtcgatcttcccaagatcggagtacacacggctggaggagaggttacctgaggatgatgggtgggtggcggcgcggtgggtttccgttatgctcaggctgcatcggcgtgttccgatctggtttgggtgttttggaactgagttggggacgtgggtgcttgggaggggcggtctttcttaccggcgtgatggggatgatagagggacggagagacggccagtaggcggcgtcggatttgctgccggcggcgggacggtaagcgtggttcctaggatatgggggcgttgcagcatcagtggcctgcattttcggcgacccaaggctcgggctggtactgatgtggcctgggccataatctgtggctggaatatccttgcttcatgggtctatgttagggtttgggcccactttttgggtcatgcccaagctattttattttctgcagttttcttacttttatattccttaggttggatgcgctttatgcgaccaataaaatcctacatttattgtgtaggcctaatcgggctatgtgcctgtgtatgcactctacgtgccttgtctgctctaggtcggcggcgagttatttgtttcgtcaaatgggcgctaccgcctagtggcagggtgagactaagtgtcgtcggatttcggcggcaacataagaggaaagttgtactaaagctggtaattatgctatgttgtactcggggtacatatcgagttatctttctgctatgtcactgctatgttaaagcaaatggagtagctatttgtgcactctttgctagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.74

Weight (kDa)

10.99

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccII CGCG 2 cut(s) 16, 160
AciI CCGC 9 cut(s) 155, 160, 255, 312, 333, 336, 664, 698, 739
AcoI YGGCCR 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 5 cut(s) 110, 421, 762, 790, 799
AfiI CCNNNNNNNGG 9 cut(s) 43, 48, 103, 311, 336, 411, 499, 558, 704
AflIII ACRYGT 1 cut(s) 14
AhdI GACNNNNNGTC 1 cut(s) 722
AjiI CACGTC 1 cut(s) 237
AjnI CCWGG 1 cut(s) 431
AluBI AGCT 3 cut(s) 515, 769, 854
AluI AGCT 3 cut(s) 515, 769, 854
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 2 cut(s) 292, 709
Alw44I GTGCAC 1 cut(s) 861
Ama87I CYCGRG 2 cut(s) 411, 792
AoxI GGCC 7 cut(s) 34, 302, 385, 429, 435, 489, 604
ApaI GGGCCC 1 cut(s) 493
ApaLI GTGCAC 1 cut(s) 861
ApeKI GCWGC 4 cut(s) 52, 184, 326, 375
Asp700I GAANNNNTTC 1 cut(s) 16
AspA2I CCTAGG 1 cut(s) 356
AspLEI GCGC 3 cut(s) 160, 567, 694
AspS9I GGNCC 3 cut(s) 435, 489, 490
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 724
AvaI CYCGRG 2 cut(s) 411, 792
AvrII CCTAGG 1 cut(s) 356
AxyI CCTNAGG 2 cut(s) 135, 553
BaeGI GKGCMC 2 cut(s) 493, 865
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanII GRGCYC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 4 cut(s) 64, 171, 313, 387
BccI CCATC 3 cut(s) 62, 137, 269
BceAI ACGGC 3 cut(s) 21, 131, 317
BciT130I CCWGG 1 cut(s) 433
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 292, 709
BfaI CTAG 4 cut(s) 357, 656, 702, 873
BfmI CTRYAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 695
BglII AGATCT 1 cut(s) 23
BisI GCNGC 9 cut(s) 53, 156, 185, 313, 327, 334, 376, 665, 740
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 9 cut(s) 54, 157, 186, 314, 328, 335, 377, 666, 741
Bme1390I CCNGG 2 cut(s) 43, 433
BmeRI GACNNNNNGTC 1 cut(s) 722
BmeT110I CYCGRG 2 cut(s) 411, 792
BmgBI CACGTC 1 cut(s) 237
BmgT120I GGNCC 3 cut(s) 435, 489, 490
BmiI GGNNCC 2 cut(s) 354, 491
BmrFI CCNGG 2 cut(s) 43, 433
BmsI GCATC 4 cut(s) 69, 196, 387, 552
BpmI CTGGAG 2 cut(s) 104, 140
Bpu10I CCTNAGC 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 641
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 42, 356, 405, 432
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 241, 271
Bsc4I CCNNNNNNNGG 9 cut(s) 43, 48, 103, 311, 336, 411, 499, 558, 704
Bse118I RCCGGY 2 cut(s) 267, 329
Bse1I ACTGG 1 cut(s) 305
Bse21I CCTNAGG 2 cut(s) 135, 553
BseBI CCWGG 1 cut(s) 433
BseDI CCNNGG 4 cut(s) 42, 356, 405, 432
BseGI GGATG 4 cut(s) 84, 145, 286, 567
BseLI CCNNNNNNNGG 9 cut(s) 43, 48, 103, 311, 336, 411, 499, 558, 704
BseMII CTCAG 3 cut(s) 126, 193, 216
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 137
BseSI GKGCMC 2 cut(s) 493, 865
BseXI GCAGC 4 cut(s) 64, 171, 313, 387
Bsh1236I CGCG 2 cut(s) 16, 160
BshFI GGCC 7 cut(s) 36, 304, 387, 431, 437, 491, 606
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 2 cut(s) 411, 792
BsiSI CCGG 3 cut(s) 42, 268, 330
BslFI GGGAC 3 cut(s) 247, 304, 352
BslI CCNNNNNNNGG 9 cut(s) 43, 48, 103, 311, 336, 411, 499, 558, 704
BsmAI GTCTC 2 cut(s) 292, 709
BsmBI CGTCTC 1 cut(s) 292
BsmFI GGGAC 3 cut(s) 247, 304, 352
BsnI GGCC 7 cut(s) 36, 304, 387, 431, 437, 491, 606
BsoBI CYCGRG 2 cut(s) 411, 792
Bsp120I GGGCCC 1 cut(s) 489
Bsp1286I GDGCHC 2 cut(s) 493, 865
Bsp143I GATC 4 cut(s) 23, 90, 101, 201
BspACI CCGC 9 cut(s) 155, 160, 255, 312, 333, 336, 664, 698, 739
BspANI GGCC 7 cut(s) 36, 304, 387, 431, 437, 491, 606
BspCNI CTCAG 3 cut(s) 127, 192, 217
BspFNI CGCG 2 cut(s) 16, 160
BspLI GGNNCC 2 cut(s) 354, 491
BspMAI CTGCAG 1 cut(s) 532
BsrFI RCCGGY 2 cut(s) 267, 329
BsrI ACTGG 1 cut(s) 305
BssAI RCCGGY 2 cut(s) 267, 329
BssECI CCNNGG 4 cut(s) 42, 356, 405, 432
BssMI GATC 4 cut(s) 23, 90, 101, 201
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 356, 405
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 1 cut(s) 343
BstACI GRCGYC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 869
BstBAI YACGTR 1 cut(s) 641
BstC8I GCNNGC 2 cut(s) 331, 389
BstDEI CTNAG 6 cut(s) 8, 135, 179, 225, 553, 719
BstEII GGTNACC 1 cut(s) 129
BstF5I GGATG 4 cut(s) 84, 145, 286, 567
BstFNI CGCG 2 cut(s) 16, 160
BstH2I RGCGCY 1 cut(s) 695
BstHHI GCGC 3 cut(s) 160, 567, 694
BstKTI GATC 4 cut(s) 26, 93, 104, 204
BstMAI GTCTC 2 cut(s) 292, 709
BstMBI GATC 4 cut(s) 23, 90, 101, 201
BstNI CCWGG 1 cut(s) 433
BstPI GGTNACC 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 41, 431
BstSFI CTRYAG 1 cut(s) 528
BstSLI GKGCMC 2 cut(s) 493, 865
BstUI CGCG 2 cut(s) 16, 160
BstV1I GCAGC 4 cut(s) 64, 171, 313, 387
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
Bsu36I CCTNAGG 2 cut(s) 135, 553
BsuRI GGCC 7 cut(s) 36, 304, 387, 431, 437, 491, 606
BtrI CACGTC 1 cut(s) 237
BtsCI GGATG 4 cut(s) 84, 145, 286, 567
BtsI GCAGTG 1 cut(s) 826
BtsIMutI CAGTG 2 cut(s) 388, 826
Cac8I GCNNGC 2 cut(s) 331, 389
CfoI GCGC 3 cut(s) 160, 567, 694
Cfr10I RCCGGY 2 cut(s) 267, 329
Cfr13I GGNCC 3 cut(s) 435, 489, 490
CseI GACGC 2 cut(s) 44, 304
Csp6I GTAC 5 cut(s) 109, 420, 761, 789, 798
CviAII CATG 2 cut(s) 468, 506
CviQI GTAC 5 cut(s) 109, 420, 761, 789, 798
DdeI CTNAG 6 cut(s) 8, 135, 179, 225, 553, 719
DpnI GATC 4 cut(s) 25, 92, 103, 203
DpnII GATC 4 cut(s) 23, 90, 101, 201
DriI GACNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 1 cut(s) 302
Eam1105I GACNNNNNGTC 1 cut(s) 722
Eco130I CCWWGG 2 cut(s) 356, 405
Eco147I AGGCCT 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 493
Eco81I CCTNAGG 2 cut(s) 135, 553
Eco88I CYCGRG 2 cut(s) 411, 792
Eco91I GGTNACC 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 431
EcoT14I CCWWGG 2 cut(s) 356, 405
EcoT38I GRGCYC 1 cut(s) 493
ErhI CCWWGG 2 cut(s) 356, 405
Esp3I CGTCTC 1 cut(s) 292
FaeI CATG 2 cut(s) 471, 509
FaqI GGGAC 3 cut(s) 247, 304, 352
FatI CATG 2 cut(s) 467, 505
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 9 cut(s) 53, 156, 185, 313, 327, 334, 376, 665, 740
FokI GGATG 4 cut(s) 91, 152, 293, 574
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 9 cut(s) 53, 156, 185, 313, 327, 334, 376, 665, 740
FspBI CTAG 4 cut(s) 357, 656, 702, 873
GlaI GCGC 3 cut(s) 159, 566, 693
GluI GCNGC 9 cut(s) 53, 156, 185, 313, 327, 334, 376, 665, 740
GsuI CTGGAG 2 cut(s) 104, 140
HaeII RGCGCY 1 cut(s) 695
HaeIII GGCC 7 cut(s) 36, 304, 387, 431, 437, 491, 606
HapII CCGG 3 cut(s) 42, 268, 330
HgaI GACGC 2 cut(s) 44, 304
HhaI GCGC 3 cut(s) 160, 567, 694
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 2 cut(s) 471, 509
Hin6I GCGC 3 cut(s) 158, 565, 692
HinP1I GCGC 3 cut(s) 158, 565, 692
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 42, 268, 330
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 2 cut(s) 111, 863
Hpy188I TCNGA 4 cut(s) 106, 201, 320, 731
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 2 cut(s) 111, 863
Hpy99I CGWCG 3 cut(s) 60, 320, 731
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 236, 640
HpyCH4V TGCA 6 cut(s) 187, 375, 391, 530, 633, 863
HpyF3I CTNAG 6 cut(s) 8, 135, 179, 225, 553, 719
HpySE526I ACGT 2 cut(s) 236, 640
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 2 cut(s) 471, 509
HspAI GCGC 3 cut(s) 158, 565, 692
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Kzo9I GATC 4 cut(s) 23, 90, 101, 201
Lsp1109I GCAGC 4 cut(s) 64, 171, 313, 387
LweI GCATC 4 cut(s) 69, 196, 387, 552
MaeI CTAG 4 cut(s) 357, 656, 702, 873
MaeII ACGT 2 cut(s) 236, 640
MaeIII GTNAC 2 cut(s) 129, 824
MalI GATC 4 cut(s) 25, 92, 103, 203
MboI GATC 4 cut(s) 23, 90, 101, 201
MboII GAAGA 1 cut(s) 85
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 2 cut(s) 493, 865
MluCI AATT 1 cut(s) 774
MluI ACGCGT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 4 cut(s) 10, 298, 539, 709
MnlI CCTC 7 cut(s) 26, 115, 120, 130, 243, 281, 744
MroNI GCCGGC 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 2 cut(s) 837, 877
MslI CAYNNNNRTG 2 cut(s) 192, 831
MspI CCGG 3 cut(s) 42, 268, 330
MspR9I CCNGG 2 cut(s) 43, 433
MvaI CCWGG 1 cut(s) 433
MvnI CGCG 2 cut(s) 16, 160
NaeI GCCGGC 1 cut(s) 331
NciI CCSGG 1 cut(s) 43
NdeII GATC 4 cut(s) 23, 90, 101, 201
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 2 cut(s) 471, 509
NlaIV GGNNCC 2 cut(s) 354, 491
NmuCI GTSAC 1 cut(s) 824
PceI AGGCCT 1 cut(s) 606
PdiI GCCGGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 9 cut(s) 54, 157, 186, 314, 328, 335, 377, 666, 741
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 129
PspGI CCWGG 1 cut(s) 431
PspN4I GGNNCC 2 cut(s) 354, 491
PspOMI GGGCCC 1 cut(s) 489
PspPI GGNCC 3 cut(s) 435, 489, 490
PsrI GAACNNNNNNTAC 2 cut(s) 336, 368
PstI CTGCAG 1 cut(s) 532
PsuI RGATCY 1 cut(s) 23
RsaI GTAC 5 cut(s) 110, 421, 762, 790, 799
RsaNI GTAC 5 cut(s) 109, 420, 761, 789, 798
RseI CAYNNNNRTG 2 cut(s) 192, 831
SaqAI TTAA 2 cut(s) 837, 877
SatI GCNGC 9 cut(s) 53, 156, 185, 313, 327, 334, 376, 665, 740
Sau3AI GATC 4 cut(s) 23, 90, 101, 201
Sau96I GGNCC 3 cut(s) 435, 489, 490
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 43, 433
SduI GDGCHC 2 cut(s) 493, 865
SetI ASST 9 cut(s) 131, 136, 239, 517, 559, 643, 661, 771, 856
SfaNI GCATC 4 cut(s) 69, 196, 387, 552
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 2 cut(s) 192, 831
Sse9I AATT 1 cut(s) 774
SseBI AGGCCT 1 cut(s) 606
SsiI CCGC 9 cut(s) 155, 160, 255, 312, 333, 336, 664, 698, 739
SspMI CTAG 4 cut(s) 357, 656, 702, 873
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 41, 431
StyI CCWWGG 2 cut(s) 356, 405
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 239, 643
TaqI TCGA 2 cut(s) 89, 805
TasI AATT 1 cut(s) 774
TatI WGTACW 3 cut(s) 108, 760, 788
TauI GCSGC 5 cut(s) 158, 315, 336, 667, 742
Tru1I TTAA 2 cut(s) 837, 877
Tru9I TTAA 2 cut(s) 837, 877
TscAI CASTG 2 cut(s) 388, 833
TseFI GTSAC 1 cut(s) 824
TseI GCWGC 4 cut(s) 52, 184, 326, 375
Tsp45I GTSAC 1 cut(s) 824
TspDTI ATGAA 1 cut(s) 456
TspGWI ACGGA 2 cut(s) 160, 308
TspRI CASTG 2 cut(s) 388, 833
Van91I CCANNNNNTGG 1 cut(s) 499
VneI GTGCAC 1 cut(s) 861
XmaJI CCTAGG 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 4 cut(s) 357, 656, 702, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.