Rh1BG181700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000267
Physical Location & Seq
Forward (+)
28997416 .. 28998969
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG181700.1

Sequence Viewer

Length: 381 bp
ATGGTTGGTGGTGGCCTCGTTTCGGACCTTGGAGCACAATGTTTGACGGCGGCGCTAGCTGAGATCGTCCATCTGGTGGGCGACGGAGGGTCTGGGGAGGGCGACGGAGGGATAGGAGTTGATCTGGTTTTTGGTTTTGTACTCCCCAGATCTGGGATTGAGGTGGTGGGGGACGGTTTCTGCTGTGCCATTGTTGGCCATGGTGGCGGGGTCCGACAGCAACTGTGGCGCGTCGGTGATGGAGGGGTGATGACGATGCTGCCCGTGCAGAAGCAGTCGTGGGCTGGGAGTAAGAGTTGCAGCCTCTCTGGGCTTGTTCCGTGGTGGGCCTGGGGTTCCACTCTGGGTCTAAGATGGGATGTTTTTTATTTTTATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.07

Weight (kDa)

4.78

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 231
AciI CCGC 2 cut(s) 50, 207
AcoI YGGCCR 1 cut(s) 196
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 22, 76, 152, 153
AhdI GACNNNNNGTC 1 cut(s) 88
AjnI CCWGG 1 cut(s) 329
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw21I GWGCWC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 223
AoxI GGCC 3 cut(s) 13, 196, 327
ApeKI GCWGC 2 cut(s) 259, 300
AspLEI GCGC 2 cut(s) 55, 231
AspS9I GGNCC 3 cut(s) 25, 211, 327
AsuHPI GGTGA 2 cut(s) 248, 259
AsuNHI GCTAGC 1 cut(s) 55
AvaII GGWCC 2 cut(s) 25, 211
BalI TGGCCA 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 246, 312
BccI CCATC 3 cut(s) 78, 233, 348
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 331
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 204
BglII AGATCT 1 cut(s) 149
BisI GCNGC 3 cut(s) 51, 260, 301
BlsI GCNGC 3 cut(s) 52, 261, 302
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 2 cut(s) 25, 211
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 25, 211, 327
BmiI GGNNCC 2 cut(s) 212, 337
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 1 cut(s) 246
BmtI GCTAGC 1 cut(s) 59
BsaJI CCNNGG 4 cut(s) 28, 199, 320, 330
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 76, 152, 153
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 4 cut(s) 28, 199, 320, 330
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 4 cut(s) 22, 76, 152, 153
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 246, 312
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 3 cut(s) 15, 198, 329
BsiHKAI GWGCWC 1 cut(s) 37
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 4 cut(s) 22, 76, 152, 153
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 3 cut(s) 15, 198, 329
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 3 cut(s) 63, 121, 149
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 2 cut(s) 50, 207
BspANI GGCC 3 cut(s) 15, 198, 329
BspCNI CTCAG 1 cut(s) 52
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 212, 337
BspOI GCTAGC 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 28, 199, 320, 330
BssMI GATC 3 cut(s) 63, 121, 149
BssT1I CCWWGG 2 cut(s) 28, 199
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 176, 225
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 60, 350
BstDSI CCRYGG 2 cut(s) 199, 320
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 231
BstKTI GATC 3 cut(s) 66, 124, 152
BstMBI GATC 3 cut(s) 63, 121, 149
BstMWI GCNNNNNNNGC 4 cut(s) 56, 204, 226, 265
BstNI CCWGG 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 329
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 2 cut(s) 246, 312
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 3 cut(s) 15, 198, 329
BtgI CCRYGG 2 cut(s) 199, 320
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 223
CfoI GCGC 2 cut(s) 55, 231
Cfr13I GGNCC 3 cut(s) 25, 211, 327
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 140
CviAII CATG 1 cut(s) 200
CviJI RGCY 7 cut(s) 15, 59, 198, 284, 303, 313, 329
CviKI_1 RGCY 7 cut(s) 15, 59, 198, 284, 303, 313, 329
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 60, 350
DpnI GATC 3 cut(s) 65, 123, 151
DpnII GATC 3 cut(s) 63, 121, 149
DriI GACNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 28, 199
Eco47I GGWCC 2 cut(s) 25, 211
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 2 cut(s) 28, 199
ErhI CCWWGG 2 cut(s) 28, 199
FaeI CATG 1 cut(s) 203
FaiI YATR 1 cut(s) 201
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 199
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 51, 260, 301
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 3 cut(s) 51, 260, 301
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 54, 230
GluI GCNGC 3 cut(s) 51, 260, 301
GsaI CCCAGC 1 cut(s) 288
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 15, 198, 329
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 55, 231
Hin1II CATG 1 cut(s) 203
Hin6I GCGC 2 cut(s) 53, 229
HinP1I GCGC 2 cut(s) 53, 229
HphI GGTGA 2 cut(s) 248, 259
Hpy188I TCNGA 2 cut(s) 25, 215
Hpy99I CGWCG 3 cut(s) 86, 107, 236
HpyCH4III ACNGT 2 cut(s) 176, 225
HpyCH4V TGCA 2 cut(s) 268, 300
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 204, 226, 265
HpyF3I CTNAG 2 cut(s) 60, 350
Hsp92II CATG 1 cut(s) 203
HspAI GCGC 2 cut(s) 53, 229
Kzo9I GATC 3 cut(s) 63, 121, 149
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 246, 312
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 56
MalI GATC 3 cut(s) 65, 123, 151
MboI GATC 3 cut(s) 63, 121, 149
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 37
MlsI TGGCCA 1 cut(s) 198
MluNI TGGCCA 1 cut(s) 198
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 7 cut(s) 26, 80, 91, 101, 154, 236, 314
Mox20I TGGCCA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 4 cut(s) 56, 204, 226, 265
NcoI CCATGG 1 cut(s) 199
NdeII GATC 3 cut(s) 63, 121, 149
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 212, 337
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 3 cut(s) 52, 261, 302
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 212, 337
PspPI GGNCC 3 cut(s) 25, 211, 327
PstNI CAGNNNCTG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SatI GCNGC 3 cut(s) 51, 260, 301
Sau3AI GATC 3 cut(s) 63, 121, 149
Sau96I GGNCC 3 cut(s) 25, 211, 327
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 37
SetI ASST 3 cut(s) 30, 61, 165
SfaNI GCATC 1 cut(s) 246
SinI GGWCC 2 cut(s) 25, 211
SsiI CCGC 2 cut(s) 50, 207
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 28, 199
TaaI ACNGT 2 cut(s) 176, 225
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 53
TseI GCWGC 2 cut(s) 259, 300
TspGWI ACGGA 3 cut(s) 99, 120, 309
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 25, 211
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.