RchiOBHm_Chr4g0424711

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000267
Physical Location & Seq
Reverse (-)
50266891 .. 50267528
638 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39396

Sequence Viewer

Length: 306 bp
ATGGTCAAATGGACGCAAGCTCCTAGTGGCAGAATGAAACGAAGTGTAGACGGAGTTACTTCCGTGCGGCAACATAGTGGGAAAGCGATGCTATTTGTAAATATGCTTCTTCGTGATAGAATTATCTTTCCGGTATGTCACTGCTATGTAAAAGTAAATAGAGTAGTCATTCGTGCACTCTTTGCTAATTGGTGCTTGTTAGAATACATAGATTTTGTGGAGACTCTTGGTATTATTTCAGGATGTTCTCTCGATGCTTATTATAATTTGGGATTCAGGCTTCACGTCCCCCCTTGTATTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.56

Weight (kDa)

9.36

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
AccI GTMKAC 1 cut(s) 48
AciI CCGC 1 cut(s) 67
AjiI CACGTC 1 cut(s) 286
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 178
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
Bbv12I GWGCWC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 302
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmgBI CACGTC 1 cut(s) 286
BmsI GCATC 2 cut(s) 78, 244
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 1 cut(s) 34
BseGI GGATG 1 cut(s) 248
BseSI GKGCMC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 178
BspACI CCGC 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 18
BstF5I GGATG 1 cut(s) 248
BstMAI GTCTC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 302
BstSLI GKGCMC 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 18
CseI GACGC 1 cut(s) 22
CviJI RGCY 2 cut(s) 20, 280
CviKI_1 RGCY 2 cut(s) 20, 280
FaiI YATR 7 cut(s) 75, 104, 136, 147, 209, 264, 304
FaqI GGGAC 1 cut(s) 272
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 68
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 22
HinfI GANTC 2 cut(s) 223, 273
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 49, 176
Hpy188III TCNNGA 3 cut(s) 113, 240, 251
Hpy8I GTNNAC 2 cut(s) 49, 176
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 285
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 144, 225, 262
LweI GCATC 2 cut(s) 78, 244
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 55, 137
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 3 cut(s) 120, 187, 265
MlyI GAGTC 1 cut(s) 217
MslI CAYNNNNRTG 1 cut(s) 144
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
PsiI TTATAA 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 144
SatI GCNGC 1 cut(s) 68
SchI GAGTC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 22, 288
SfaNI GCATC 2 cut(s) 78, 244
SfcI CTRYAG 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 3 cut(s) 120, 187, 265
SsiI CCGC 1 cut(s) 67
SspMI CTAG 1 cut(s) 24
TaiI ACGT 1 cut(s) 288
TaqI TCGA 1 cut(s) 252
TasI AATT 3 cut(s) 120, 187, 265
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 273
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 2 cut(s) 52, 66
TspRI CASTG 1 cut(s) 146
VneI GTGCAC 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.