Rroxscaffold_2G00098060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000267
Physical Location & Seq
Forward (+)
19200235 .. 19200684
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00098060.1

Sequence Viewer

Length: 348 bp
ATGCCCCGTCCGGCGGCGCGTCTATGGGACGTTGTCGTCGGACGGGTGTTCTATGGGTCTACCGACGAGGGACGATCGGCGAAGAATCCGAGCAAGGGCGGAGCGGCGAAGGATTTCGGTCTTCGGTGGGGGCGATCTCGTTTTTCAAGGTGGACTACCGCCGCCGGTGCCCCCGCGTTGGGGTTGAGCAAAGCCGACGGAGGTTGTCATGATCGACCCGGTATTGGATCCGATTTTGGTCCGAGATCGGAGTCCAAGGTGATCCGGCCGACGATGTCGGTGGGCGGCCAAGAAATGATGAAGCGACGTGATCCGTTGGCGATTGAGATGCAGTTCCTGCAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.49

Weight (kDa)

10.58

Isoelectric Point (pI)

72.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 104
AccI GTMKAC 1 cut(s) 59
AccII CGCG 2 cut(s) 19, 176
AciI CCGC 7 cut(s) 14, 99, 104, 159, 162, 174, 285
AclWI GGATC 4 cut(s) 222, 235, 256, 305
AcoI YGGCCR 2 cut(s) 266, 286
AfiI CCNNNNNNNGG 6 cut(s) 13, 95, 178, 179, 180, 224
AgsI TTSAA 1 cut(s) 147
AjiI CACGTC 1 cut(s) 308
AlwI GGATC 4 cut(s) 222, 235, 256, 305
AlwNI CAGNNNCTG 1 cut(s) 337
AoxI GGCC 2 cut(s) 266, 286
ApeKI GCWGC 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 172
BamHI GGATCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BcnI CCSGG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 338
BisI GCNGC 5 cut(s) 15, 105, 162, 286, 341
BlsI GCNGC 5 cut(s) 16, 106, 163, 287, 342
Bme1390I CCNGG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 2 cut(s) 169, 229
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 6 cut(s) 13, 95, 178, 179, 180, 224
Bse118I RCCGGY 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 255
BseLI CCNNNNNNNGG 6 cut(s) 13, 95, 178, 179, 180, 224
BseSI GKGCMC 1 cut(s) 172
BseX3I CGGCCG 1 cut(s) 266
Bsh1236I CGCG 2 cut(s) 19, 176
Bsh1285I CGRYCG 2 cut(s) 77, 269
BshFI GGCC 2 cut(s) 268, 288
BshNI GGYRCC 1 cut(s) 167
BsiEI CGRYCG 2 cut(s) 77, 269
BsiSI CCGG 4 cut(s) 11, 165, 219, 265
BslFI GGGAC 2 cut(s) 41, 84
BslI CCNNNNNNNGG 6 cut(s) 13, 95, 178, 179, 180, 224
BsmFI GGGAC 2 cut(s) 41, 84
BsnI GGCC 2 cut(s) 268, 288
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
BspACI CCGC 7 cut(s) 14, 99, 104, 159, 162, 174, 285
BspANI GGCC 2 cut(s) 268, 288
BspFNI CGCG 2 cut(s) 19, 176
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 169, 229
BspMAI CTGCAG 1 cut(s) 342
BspPI GGATC 4 cut(s) 222, 235, 256, 305
BspT107I GGYRCC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
BssT1I CCWWGG 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 337
BstFNI CGCG 2 cut(s) 19, 176
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 7 cut(s) 77, 137, 214, 230, 248, 264, 313
BstMBI GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
BstMCI CGRYCG 2 cut(s) 77, 269
BstMWI GCNNNNNNNGC 2 cut(s) 167, 337
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 1 cut(s) 338
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 2 cut(s) 19, 176
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BstZI CGGCCG 1 cut(s) 266
BsuRI GGCC 2 cut(s) 268, 288
BtrI CACGTC 1 cut(s) 308
CaiI CAGNNNCTG 1 cut(s) 337
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 8
CviAII CATG 1 cut(s) 209
CviJI RGCY 3 cut(s) 194, 268, 288
CviKI_1 RGCY 3 cut(s) 194, 268, 288
DpnI GATC 7 cut(s) 76, 136, 213, 229, 247, 263, 312
DpnII GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
EaeI YGGCCR 2 cut(s) 266, 286
EagI CGGCCG 1 cut(s) 266
EciI GGCGGA 1 cut(s) 114
EclXI CGGCCG 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 239
Eco52I CGGCCG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 25, 54, 210
FaqI GGGAC 2 cut(s) 41, 84
FatI CATG 1 cut(s) 208
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 5 cut(s) 15, 105, 162, 286, 341
Fsp4HI GCNGC 5 cut(s) 15, 105, 162, 286, 341
GlaI GCGC 1 cut(s) 18
GluI GCNGC 5 cut(s) 15, 105, 162, 286, 341
HaeIII GGCC 2 cut(s) 268, 288
HapII CCGG 4 cut(s) 11, 165, 219, 265
HgaI GACGC 1 cut(s) 8
HhaI GCGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 212
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HinfI GANTC 2 cut(s) 85, 251
HpaII CCGG 4 cut(s) 11, 165, 219, 265
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 60, 153
Hpy188I TCNGA 5 cut(s) 41, 90, 232, 243, 250
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 60, 153
Hpy99I CGWCG 5 cut(s) 41, 68, 200, 274, 309
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 30, 307
HpyCH4V TGCA 2 cut(s) 331, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 337
HpySE526I ACGT 2 cut(s) 30, 307
Hsp92II CATG 1 cut(s) 212
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 4 cut(s) 24, 178, 232, 278
LweI GCATC 1 cut(s) 318
MaeII ACGT 2 cut(s) 30, 307
MalI GATC 7 cut(s) 76, 136, 213, 229, 247, 263, 312
MbiI CCGCTC 1 cut(s) 104
MboI GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
MboII GAAGA 2 cut(s) 94, 113
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 172
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 2 cut(s) 61, 194
MroXI GAANNNNTTC 1 cut(s) 113
MspI CCGG 4 cut(s) 11, 165, 219, 265
MspR9I CCNGG 1 cut(s) 219
MvnI CGCG 2 cut(s) 19, 176
MwoI GCNNNNNNNGC 2 cut(s) 167, 337
NciI CCSGG 1 cut(s) 219
NdeII GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 169, 229
PagI TCATGA 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 85
PflFI GACNNNGTC 2 cut(s) 32, 274
PkrI GCNGC 5 cut(s) 16, 106, 163, 287, 342
Ple19I CGATCG 1 cut(s) 77
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 169, 229
PspPI GGNCC 1 cut(s) 239
PstI CTGCAG 1 cut(s) 342
PstNI CAGNNNCTG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 227
PsyI GACNNNGTC 2 cut(s) 32, 274
PvuI CGATCG 1 cut(s) 77
SatI GCNGC 5 cut(s) 15, 105, 162, 286, 341
Sau3AI GATC 7 cut(s) 74, 134, 211, 227, 245, 261, 310
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 172
SetI ASST 5 cut(s) 33, 152, 205, 261, 310
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 338
SgrAI CRCCGGYG 1 cut(s) 164
SinI GGWCC 1 cut(s) 239
SsiI CCGC 7 cut(s) 14, 99, 104, 159, 162, 174, 285
StyD4I CCNGG 1 cut(s) 217
StyI CCWWGG 1 cut(s) 255
TaiI ACGT 2 cut(s) 33, 310
TaqI TCGA 1 cut(s) 214
TaqII GACCGA 1 cut(s) 107
TauI GCSGC 4 cut(s) 17, 107, 164, 288
TfiI GAWTC 1 cut(s) 85
TseI GCWGC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 314
TspGWI ACGGA 2 cut(s) 213, 303
Tth111I GACNNNGTC 2 cut(s) 32, 274
VpaK11BI GGWCC 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.