Rorug01G0195800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000267
Physical Location & Seq
Forward (+)
27455265 .. 27456864
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0195800.1

Sequence Viewer

Length: 681 bp
ATGGCAGCAAAAGAAGAAGCTAAGGAGAAAGATCGGAAAGACGACAAAGCCAAAGATGAAAAGAAAGCCAAGGAGAAAGATGGAGTAATCACAGCTGTTTATAAGGTTAACCTGCACTGCCCACAGTGTGCACGTGAGATCAAGAAGCCTCTTATTGCTACCCAAGGGGTTCACAATGTGGAGGTTGAAAGGGACAAAGGTGAAATCAAGGCAATTTCACGGACAACATTAGTGAAGGTTCACATGCATTGCCACAAATGTGAGCAAGATCTGAAGAAGAAGTTGTTAACGAACAAAGGTGTTCACAATGTTAAAACGGACATGAAAGCACAAACCCTAGCAGTGGAAGGAACAATTGATCCTGAAAAACTAATATCGTACTTGCGCAAAAAGGTGCACAAACACGCTGAGATCATACCCCCAAAACAAGAGAAGAAGGATGAGACGAAACAAAAGGAGAAGAGTTCCTCAAAACCCCCAGAGAAAAAGGAGGAAAAGAAAGAGAAGGAGAAGGAGAGTGGTAAATCTACTGAAATAGATACCAAGGTTGTACACGTTAAGGAAGAGATAAAGGTGGTGGAGGTTAAGACAAAAGAGGGGAGTGCTCCTTATTTCATTCACTATGTCTATGCTCCACAAATATTTAGTGATGAAAATCCAAATGCTTGCTCTATAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.8

Weight (kDa)

9.2

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 79 - 134 8.7e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
Acc16I TGCGCA 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 293
AcvI CACGTG 1 cut(s) 134
AdeI CACNNNGTG 2 cut(s) 128, 178
AfaI GTAC 2 cut(s) 380, 552
AfiI CCNNNNNNNGG 1 cut(s) 343
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 258
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 2 cut(s) 20, 95
AluI AGCT 2 cut(s) 20, 95
Alw21I GWGCWC 3 cut(s) 133, 399, 607
Alw26I GTCTC 1 cut(s) 437
Alw44I GTGCAC 2 cut(s) 129, 395
AlwI GGATC 1 cut(s) 353
ApaLI GTGCAC 2 cut(s) 129, 395
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 212
BaeGI GKGCMC 2 cut(s) 133, 399
BaeI ACNNNNGTAYC 2 cut(s) 531, 564
BbrPI CACGTG 1 cut(s) 134
Bbv12I GWGCWC 3 cut(s) 133, 399, 607
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 120
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bpu10I CCTNAGC 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 3 cut(s) 69, 163, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 654
BseDI CCNNGG 3 cut(s) 69, 163, 543
BseGI GGATG 1 cut(s) 445
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 399
BseSI GKGCMC 2 cut(s) 133, 399
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 98
BsiHKAI GWGCWC 3 cut(s) 133, 399, 607
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 1 cut(s) 206
Bsp1286I GDGCHC 3 cut(s) 133, 399, 607
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 5 cut(s) 31, 138, 268, 358, 411
BspCNI CTCAG 1 cut(s) 400
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 247
BsrGI TGTACA 1 cut(s) 550
BssECI CCNNGG 3 cut(s) 69, 163, 543
BssMI GATC 5 cut(s) 31, 138, 268, 358, 411
BssT1I CCWWGG 3 cut(s) 69, 163, 543
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 455, 558
BstAUI TGTACA 1 cut(s) 550
BstBAI YACGTR 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 667
BstDEI CTNAG 2 cut(s) 21, 408
BstF5I GGATG 1 cut(s) 445
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 5 cut(s) 34, 141, 271, 361, 414
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 5 cut(s) 31, 138, 268, 358, 411
BstNSI RCATGY 1 cut(s) 247
BstSLI GKGCMC 2 cut(s) 133, 399
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 2 cut(s) 115, 348
BtsIMutI CAGTG 3 cut(s) 115, 131, 348
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 667
CfoI GCGC 1 cut(s) 387
Csp6I GTAC 2 cut(s) 379, 551
CviAII CATG 2 cut(s) 244, 322
CviJI RGCY 5 cut(s) 20, 50, 68, 95, 148
CviKI_1 RGCY 5 cut(s) 20, 50, 68, 95, 148
CviQI GTAC 2 cut(s) 379, 551
DdeI CTNAG 2 cut(s) 21, 408
DpnI GATC 5 cut(s) 33, 140, 270, 360, 413
DpnII GATC 5 cut(s) 31, 138, 268, 358, 411
DraIII CACNNNGTG 2 cut(s) 128, 178
Eam1104I CTCTTC 2 cut(s) 455, 558
EarI CTCTTC 2 cut(s) 455, 558
Eco130I CCWWGG 3 cut(s) 69, 163, 543
Eco57I CTGAAG 1 cut(s) 293
Eco72I CACGTG 1 cut(s) 134
EcoT14I CCWWGG 3 cut(s) 69, 163, 543
EcoT22I ATGCAT 1 cut(s) 249
ErhI CCWWGG 3 cut(s) 69, 163, 543
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 2 cut(s) 247, 325
FaiI YATR 7 cut(s) 102, 245, 323, 416, 624, 630, 674
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 243, 321
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 452
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 338
FspI TGCGCA 1 cut(s) 386
GlaI GCGC 1 cut(s) 386
GluI GCNGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 387
Hin1II CATG 2 cut(s) 247, 325
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HincII GTYRAC 2 cut(s) 109, 288
HindII GTYRAC 2 cut(s) 109, 288
HpaI GTTAAC 2 cut(s) 109, 288
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 8 cut(s) 109, 131, 172, 241, 288, 304, 397, 553
Hpy188I TCNGA 2 cut(s) 36, 273
Hpy188III TCNNGA 2 cut(s) 142, 362
Hpy8I GTNNAC 8 cut(s) 109, 131, 172, 241, 288, 304, 397, 553
HpyAV CCTTC 5 cut(s) 229, 341, 430, 499, 505
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 2 cut(s) 133, 555
HpyCH4V TGCA 4 cut(s) 115, 131, 247, 397
HpyF3I CTNAG 2 cut(s) 21, 408
HpySE526I ACGT 2 cut(s) 133, 555
Hsp92II CATG 2 cut(s) 247, 325
HspAI GCGC 1 cut(s) 385
KspAI GTTAAC 2 cut(s) 109, 288
Kzo9I GATC 5 cut(s) 31, 138, 268, 358, 411
LmnI GCTCC 2 cut(s) 610, 637
LpnPI CCDG 3 cut(s) 125, 375, 492
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 338
MaeII ACGT 2 cut(s) 133, 555
MalI GATC 5 cut(s) 33, 140, 270, 360, 413
MboI GATC 5 cut(s) 31, 138, 268, 358, 411
MboII GAAGA 6 cut(s) 26, 286, 289, 445, 472, 575
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 3 cut(s) 133, 399, 607
MluCI AATT 2 cut(s) 213, 354
MnlI CCTC 6 cut(s) 159, 175, 478, 484, 574, 589
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 5 cut(s) 108, 287, 312, 558, 585
MslI CAYNNNNRTG 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 95
MunI CAATTG 1 cut(s) 354
NdeII GATC 5 cut(s) 31, 138, 268, 358, 411
NlaIII CATG 2 cut(s) 247, 325
NsbI TGCGCA 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 1 cut(s) 247
OliI CACNNNNGTG 1 cut(s) 258
PkrI GCNGC 1 cut(s) 7
PmaCI CACGTG 1 cut(s) 134
PmlI CACGTG 1 cut(s) 134
Ppu21I YACGTR 1 cut(s) 134
PsiI TTATAA 1 cut(s) 102
PspCI CACGTG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 2 cut(s) 380, 552
RsaNI GTAC 2 cut(s) 379, 551
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 5 cut(s) 108, 287, 312, 558, 585
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 31, 138, 268, 358, 411
SduI GDGCHC 3 cut(s) 133, 399, 607
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 2 cut(s) 213, 354
SspI AATATT 1 cut(s) 642
SspMI CTAG 1 cut(s) 338
StyI CCWWGG 3 cut(s) 69, 163, 543
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 2 cut(s) 136, 558
TasI AATT 2 cut(s) 213, 354
TatI WGTACW 1 cut(s) 550
Tru1I TTAA 5 cut(s) 108, 287, 312, 558, 585
Tru9I TTAA 5 cut(s) 108, 287, 312, 558, 585
TscAI CASTG 3 cut(s) 122, 131, 348
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 4 cut(s) 72, 338, 604, 666
TspGWI ACGGA 2 cut(s) 235, 332
TspRI CASTG 3 cut(s) 122, 131, 348
VneI GTGCAC 2 cut(s) 129, 395
XceI RCATGY 1 cut(s) 247
XspI CTAG 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.