Rh7BG204000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000267
Physical Location & Seq
Forward (+)
17064154 .. 17064660
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG204000.1

Sequence Viewer

Length: 417 bp
ATGGTGGTTCCGGCTAGCAGCAGCGTTCAATGGCAGCGACTCGGTCCGGGATCTGAGAGAGGTTGTTCGAACTTGGAGAGGGCAGATCGATCTAGATCTGTTCTGGTTTCGGGGGCGAACACGGGGGTCTGCAGGCGTGATTCTGTGTTGTTTCTGGAGCAGTTGGAGTGGCTCTGGGACACGGATAGCCGGCGGCGAACAATGGAGGCTCAGGAGGCAGTTTCGATCTGGGTTCGGGTGGAGCTGGATCCGATCTGGGTTTGGGGATGGACGGGGGTCTGCAGTTGGAGTGGGTCTGGGACACGGATGGCCGGCGGCGAACCTTGGAAGCTCTGCGGCAACTGGGGGCTGGGGGTCGGTCCCTGCGATCCCGATCTGGTAGGTTCTGGATCGGGTTTTGGGCACCGATCGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.07

Weight (kDa)

5.81

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 402
AciI CCGC 3 cut(s) 193, 315, 336
AclWI GGATC 5 cut(s) 58, 242, 255, 362, 397
AcoI YGGCCR 1 cut(s) 309
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 2 cut(s) 244, 331
AluI AGCT 2 cut(s) 244, 331
AlwI GGATC 5 cut(s) 58, 242, 255, 362, 397
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 18, 21, 34
AspS9I GGNCC 2 cut(s) 44, 359
AsuC2I CCSGG 1 cut(s) 48
AsuII TTCGAA 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 14
AvaII GGWCC 2 cut(s) 44, 359
BaeGI GKGCMC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 30, 33, 46
BccI CCATC 2 cut(s) 261, 301
BcnI CCSGG 1 cut(s) 48
BfaI CTAG 2 cut(s) 15, 93
BfmI CTRYAG 2 cut(s) 130, 280
BglII AGATCT 1 cut(s) 95
BisI GCNGC 6 cut(s) 19, 22, 35, 194, 316, 337
BlsI GCNGC 6 cut(s) 20, 23, 36, 195, 317, 338
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 44, 359
BmgT120I GGNCC 2 cut(s) 44, 359
BmiI GGNNCC 4 cut(s) 9, 249, 361, 404
BmrFI CCNGG 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 352
BmtI GCTAGC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 352
BoxI GACNNNNGTC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 48
Bsa29I ATCGAT 1 cut(s) 88
BsaBI GATNNNNATC 2 cut(s) 94, 372
BsaJI CCNNGG 1 cut(s) 323
Bse118I RCCGGY 2 cut(s) 189, 311
Bse1I ACTGG 1 cut(s) 347
Bse8I GATNNNNATC 2 cut(s) 94, 372
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 323
BseGI GGATG 2 cut(s) 272, 312
BseJI GATNNNNATC 2 cut(s) 94, 372
BseMII CTCAG 2 cut(s) 45, 224
BseNI ACTGG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 3 cut(s) 30, 33, 46
BseYI CCCAGC 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 410
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 402
BshVI ATCGAT 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 410
BsiSI CCGG 4 cut(s) 11, 47, 190, 312
BslFI GGGAC 3 cut(s) 191, 313, 345
BsmFI GGGAC 3 cut(s) 191, 313, 345
BsnI GGCC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 405
BspACI CCGC 3 cut(s) 193, 315, 336
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 46, 223
BspDI ATCGAT 1 cut(s) 88
BspLI GGNNCC 4 cut(s) 9, 249, 361, 404
BspMAI CTGCAG 2 cut(s) 134, 284
BspOI GCTAGC 1 cut(s) 18
BspPI GGATC 5 cut(s) 58, 242, 255, 362, 397
BspT104I TTCGAA 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 402
BsrFI RCCGGY 2 cut(s) 189, 311
BsrI ACTGG 1 cut(s) 347
BssAI RCCGGY 2 cut(s) 189, 311
BssECI CCNNGG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 323
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 4 cut(s) 16, 134, 191, 313
BstDEI CTNAG 2 cut(s) 54, 210
BstF5I GGATG 2 cut(s) 272, 312
BstMCI CGRYCG 1 cut(s) 410
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstPAI GACNNNNGTC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 2 cut(s) 130, 280
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 30, 33, 46
BstX2I RGATCY 3 cut(s) 50, 95, 247
BstYI RGATCY 3 cut(s) 50, 95, 247
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 1 cut(s) 311
BsuTUI ATCGAT 1 cut(s) 88
BtsCI GGATG 2 cut(s) 272, 312
Cac8I GCNNGC 4 cut(s) 16, 134, 191, 313
Cfr10I RCCGGY 2 cut(s) 189, 311
Cfr13I GGNCC 2 cut(s) 44, 359
ClaI ATCGAT 1 cut(s) 88
CpoI CGGWCCG 1 cut(s) 44
CspI CGGWCCG 1 cut(s) 44
CviJI RGCY 8 cut(s) 14, 172, 189, 209, 244, 311, 331, 349
CviKI_1 RGCY 8 cut(s) 14, 172, 189, 209, 244, 311, 331, 349
DdeI CTNAG 2 cut(s) 54, 210
EaeI YGGCCR 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 323
Eco47I GGWCC 2 cut(s) 44, 359
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaqI GGGAC 3 cut(s) 191, 313, 345
Fnu4HI GCNGC 6 cut(s) 19, 22, 35, 194, 316, 337
FokI GGATG 2 cut(s) 279, 319
Fsp4HI GCNGC 6 cut(s) 19, 22, 35, 194, 316, 337
FspBI CTAG 2 cut(s) 15, 93
GluI GCNGC 6 cut(s) 19, 22, 35, 194, 316, 337
GsaI CCCAGC 1 cut(s) 353
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 311
HapII CCGG 4 cut(s) 11, 47, 190, 312
HinfI GANTC 2 cut(s) 39, 140
HpaII CCGG 4 cut(s) 11, 47, 190, 312
Hpy188I TCNGA 2 cut(s) 55, 252
Hpy188III TCNNGA 5 cut(s) 93, 155, 212, 371, 387
HpyCH4V TGCA 2 cut(s) 132, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 2 cut(s) 54, 210
KroI GCCGGC 2 cut(s) 189, 311
KroNI GCCGGC 2 cut(s) 191, 313
LmnI GCTCC 2 cut(s) 157, 241
Lsp1109I GCAGC 3 cut(s) 30, 33, 46
MaeI CTAG 2 cut(s) 15, 93
MflI RGATCY 3 cut(s) 50, 95, 247
MhlI GDGCHC 1 cut(s) 405
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 144, 266
MnlI CCTC 4 cut(s) 53, 72, 199, 208
MroNI GCCGGC 2 cut(s) 189, 311
MspI CCGG 4 cut(s) 11, 47, 190, 312
MspR9I CCNGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 215
NaeI GCCGGC 2 cut(s) 191, 313
NciI CCSGG 1 cut(s) 48
NgoMIV GCCGGC 2 cut(s) 189, 311
NheI GCTAGC 1 cut(s) 14
NlaIV GGNNCC 4 cut(s) 9, 249, 361, 404
NspV TTCGAA 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PdiI GCCGGC 2 cut(s) 191, 313
PfeI GAWTC 1 cut(s) 140
PflFI GACNNNGTC 1 cut(s) 42
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 6 cut(s) 20, 23, 36, 195, 317, 338
Ple19I CGATCG 1 cut(s) 410
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
PshAI GACNNNNGTC 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 349
PspN4I GGNNCC 4 cut(s) 9, 249, 361, 404
PspPI GGNCC 2 cut(s) 44, 359
PstI CTGCAG 2 cut(s) 134, 284
PsuI RGATCY 3 cut(s) 50, 95, 247
PsyI GACNNNGTC 1 cut(s) 42
PvuI CGATCG 1 cut(s) 410
Rsr2I CGGWCCG 1 cut(s) 44
RsrII CGGWCCG 1 cut(s) 44
SatI GCNGC 6 cut(s) 19, 22, 35, 194, 316, 337
Sau96I GGNCC 2 cut(s) 44, 359
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 405
SetI ASST 5 cut(s) 64, 246, 325, 333, 385
SfcI CTRYAG 2 cut(s) 130, 280
SfuI TTCGAA 1 cut(s) 68
SinI GGWCC 2 cut(s) 44, 359
SsiI CCGC 3 cut(s) 193, 315, 336
SspMI CTAG 2 cut(s) 15, 93
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 323
TaqI TCGA 3 cut(s) 68, 88, 224
TaqII GACCGA 2 cut(s) 32, 347
TauI GCSGC 3 cut(s) 196, 318, 339
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 3 cut(s) 18, 21, 34
TspGWI ACGGA 2 cut(s) 197, 319
Tth111I GACNNNGTC 1 cut(s) 42
VpaK11BI GGWCC 2 cut(s) 44, 359
XbaI TCTAGA 1 cut(s) 92
XspI CTAG 2 cut(s) 15, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.