Rroxscaffold_5G00361140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000267
Physical Location & Seq
Forward (+)
41738992 .. 41748631
9640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361140.1

Sequence Viewer

Length: 729 bp
ATGGCGGGGATCCGGCTCGGGGACGGAGGTTGGCGCTTCTACTTGGATTGGGGCGGAGATTCCGGATCGGTTTCGTCTCTTCGTCGATCGTGGGTGGGAGCCGGCACGGATTTCCGGCGTGGTGCAATGCGGGCGGGGCTCGATCGCGGTGTTGCTGCGCAGTGTCCGGGCCAAGGCCGGTTTCTTGGCGGTGGTTGGGTTCTCGATTTCATGGAAGTGACGAGCTTCTCGGAGTTAGATCTCGCACGCCGCCGAGGATCTCGTGTGGTTGTCTTTGTGGTGTGTCGTTGCGGTTGTGGCGGCGGGACGGTACAAGGTGGGAGGATGGCGGAGGGTGCAGGTACGGGCGGCCGCCTTGGTGGATCGCGGGAACTCCAACATTCGATCTGGAAAGCATGGTTGACGAGGAAAAATGCAACCGAAAATTCAAAATTTTTGGCAGCTCAGTGGGCAAAGGCTCCTCTAGCTGGGTCAAACACAATCTACAAGCCACCAAATCATTTCACAACCCTAGCTGGATCCATCGTCAAGCCACCAAGTCAATGGTATGGTGACATCATGAGCCAGCGAGCCAAGAAGGAGAGCGGACTTAGGAAAGATCCAGAGTACCCTCGTGGGACTTGTCAACAGATTGGATTGGCATCGCTTGATTGGAGCCCGGTTGGATCGACGTTGCGTGATCAAAAGCTGGTTGGATCTATGCGGCATGATTGGAGGTTGTGGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.3

Weight (kDa)

10.24

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 585
AccII CGCG 2 cut(s) 147, 367
AccIII TCCGGA 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 2 cut(s) 424, 431
AfaI GTAC 3 cut(s) 312, 343, 608
AfiI CCNNNNNNNGG 3 cut(s) 19, 173, 467
AgsI TTSAA 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 5 cut(s) 225, 443, 467, 515, 688
AluI AGCT 5 cut(s) 225, 443, 467, 515, 688
Alw26I GTCTC 1 cut(s) 81
Ama87I CYCGRG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 3 cut(s) 169, 175, 349
ApeKI GCWGC 2 cut(s) 155, 440
ApoI RAATTY 2 cut(s) 424, 431
AspLEI GCGC 2 cut(s) 36, 160
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 2 cut(s) 168, 659
AsuHPI GGTGA 1 cut(s) 563
AvaI CYCGRG 1 cut(s) 17
BamHI GGATCC 2 cut(s) 9, 518
BanII GRGCYC 2 cut(s) 141, 659
BauI CACGAG 2 cut(s) 261, 612
BbvI GCAGC 2 cut(s) 142, 452
BccI CCATC 2 cut(s) 319, 530
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 2 cut(s) 168, 659
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 464, 512
BfoI RGCGCY 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 329
BglII AGATCT 1 cut(s) 238
BisI GCNGC 7 cut(s) 156, 250, 301, 349, 352, 441, 704
BlsI GCNGC 7 cut(s) 157, 251, 302, 350, 353, 442, 705
Bme1390I CCNGG 2 cut(s) 168, 659
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 5 cut(s) 11, 100, 459, 520, 656
BmrFI CCNGG 2 cut(s) 168, 659
BmsI GCATC 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 168, 659
BsaBI GATNNNNATC 1 cut(s) 640
BsaJI CCNNGG 3 cut(s) 172, 253, 355
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 173, 467
Bse118I RCCGGY 2 cut(s) 101, 177
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 640
BseAI TCCGGA 1 cut(s) 62
BseDI CCNNGG 3 cut(s) 172, 253, 355
BseGI GGATG 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 640
BseLI CCNNNNNNNGG 3 cut(s) 19, 173, 467
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 450
BseX3I CGGCCG 1 cut(s) 349
BseXI GCAGC 2 cut(s) 142, 452
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 147, 367
Bsh1285I CGRYCG 3 cut(s) 89, 145, 352
BshFI GGCC 3 cut(s) 171, 177, 351
BsiEI CGRYCG 3 cut(s) 89, 145, 352
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 7 cut(s) 13, 63, 102, 115, 167, 178, 659
BslFI GGGAC 3 cut(s) 35, 319, 631
BslI CCNNNNNNNGG 3 cut(s) 19, 173, 467
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 3 cut(s) 35, 319, 631
BsnI GGCC 3 cut(s) 171, 177, 351
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 141, 659
Bsp13I TCCGGA 1 cut(s) 62
BspANI GGCC 3 cut(s) 171, 177, 351
BspCNI CTCAG 1 cut(s) 457
BspEI TCCGGA 1 cut(s) 62
BspFNI CGCG 2 cut(s) 147, 367
BspHI TCATGA 1 cut(s) 558
BspLI GGNNCC 5 cut(s) 11, 100, 459, 520, 656
BspMI ACCTGC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 585
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 2 cut(s) 101, 177
BssAI RCCGGY 2 cut(s) 101, 177
BssECI CCNNGG 3 cut(s) 172, 253, 355
BssSI CACGAG 2 cut(s) 261, 612
BssT1I CCWWGG 2 cut(s) 172, 355
Bst2BI CACGAG 2 cut(s) 261, 612
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 5 cut(s) 103, 132, 247, 566, 570
BstDEI CTNAG 2 cut(s) 444, 590
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 2 cut(s) 147, 367
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 2 cut(s) 36, 160
BstMAI GTCTC 1 cut(s) 81
BstMCI CGRYCG 3 cut(s) 89, 145, 352
BstMWI GCNNNNNNNGC 6 cut(s) 131, 136, 297, 335, 449, 464
BstSCI CCNGG 2 cut(s) 166, 657
BstUI CGCG 2 cut(s) 147, 367
BstV1I GCAGC 2 cut(s) 142, 452
BstX2I RGATCY 6 cut(s) 9, 238, 257, 518, 598, 695
BstXI CCANNNNNNTGG 1 cut(s) 543
BstYI RGATCY 6 cut(s) 9, 238, 257, 518, 598, 695
BstZI CGGCCG 1 cut(s) 349
BsuRI GGCC 3 cut(s) 171, 177, 351
BtgZI GCGATG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 167, 452
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 5 cut(s) 103, 132, 247, 566, 570
CciI TCATGA 1 cut(s) 558
CciNI GCGGCCGC 1 cut(s) 349
CfoI GCGC 2 cut(s) 36, 160
Cfr10I RCCGGY 2 cut(s) 101, 177
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 3 cut(s) 311, 342, 607
CviAII CATG 4 cut(s) 211, 396, 559, 707
CviQI GTAC 3 cut(s) 311, 342, 607
DdeI CTNAG 2 cut(s) 444, 590
EaeI YGGCCR 1 cut(s) 349
EagI CGGCCG 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EciI GGCGGA 2 cut(s) 69, 344
EclXI CGGCCG 1 cut(s) 349
Eco130I CCWWGG 2 cut(s) 172, 355
Eco24I GRGCYC 2 cut(s) 141, 659
Eco52I CGGCCG 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 17
EcoT14I CCWWGG 2 cut(s) 172, 355
EcoT38I GRGCYC 2 cut(s) 141, 659
ErhI CCWWGG 2 cut(s) 172, 355
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 4 cut(s) 214, 399, 562, 710
FaiI YATR 6 cut(s) 212, 397, 549, 560, 701, 708
FaqI GGGAC 3 cut(s) 35, 319, 631
FatI CATG 4 cut(s) 210, 395, 558, 706
FauI CCCGC 4 cut(s) 123, 127, 296, 360
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 7 cut(s) 156, 250, 301, 349, 352, 441, 704
FokI GGATG 1 cut(s) 337
FriOI GRGCYC 2 cut(s) 141, 659
Fsp4HI GCNGC 7 cut(s) 156, 250, 301, 349, 352, 441, 704
FspBI CTAG 2 cut(s) 464, 512
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 2 cut(s) 35, 159
GluI GCNGC 7 cut(s) 156, 250, 301, 349, 352, 441, 704
GsaI CCCAGC 1 cut(s) 471
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 3 cut(s) 171, 177, 351
HapII CCGG 7 cut(s) 13, 63, 102, 115, 167, 178, 659
HhaI GCGC 2 cut(s) 36, 160
Hin1II CATG 4 cut(s) 214, 399, 562, 710
Hin6I GCGC 2 cut(s) 34, 158
HinP1I GCGC 2 cut(s) 34, 158
HincII GTYRAC 2 cut(s) 402, 626
HindII GTYRAC 2 cut(s) 402, 626
HinfI GANTC 1 cut(s) 59
HpaII CCGG 7 cut(s) 13, 63, 102, 115, 167, 178, 659
HphI GGTGA 1 cut(s) 563
Hpy166II GTNNAC 2 cut(s) 402, 626
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 5 cut(s) 63, 203, 388, 559, 602
Hpy8I GTNNAC 2 cut(s) 402, 626
Hpy99I CGWCG 2 cut(s) 87, 673
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 671
HpyCH4V TGCA 3 cut(s) 125, 338, 416
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 136, 297, 335, 449, 464
HpyF3I CTNAG 2 cut(s) 444, 590
HpySE526I ACGT 1 cut(s) 671
Hsp92II CATG 4 cut(s) 214, 399, 562, 710
HspAI GCGC 2 cut(s) 34, 158
Kpn2I TCCGGA 1 cut(s) 62
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 679
LmnI GCTCC 3 cut(s) 98, 463, 654
Lsp1109I GCAGC 2 cut(s) 142, 452
LweI GCATC 1 cut(s) 650
MaeI CTAG 2 cut(s) 464, 512
MaeII ACGT 1 cut(s) 671
MaeIII GTNAC 2 cut(s) 217, 551
MbiI CCGCTC 1 cut(s) 585
MboII GAAGA 1 cut(s) 71
MflI RGATCY 6 cut(s) 9, 238, 257, 518, 598, 695
MhlI GDGCHC 2 cut(s) 141, 659
MluCI AATT 2 cut(s) 424, 431
MmeI TCCRAC 3 cut(s) 400, 643, 673
MnlI CCTC 8 cut(s) 20, 248, 315, 325, 399, 471, 621, 708
MroI TCCGGA 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 1 cut(s) 727
MslI CAYNNNNRTG 1 cut(s) 215
MspI CCGG 7 cut(s) 13, 63, 102, 115, 167, 178, 659
MspR9I CCNGG 2 cut(s) 168, 659
MvnI CGCG 2 cut(s) 147, 367
MwoI GCNNNNNNNGC 6 cut(s) 131, 136, 297, 335, 449, 464
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 2 cut(s) 168, 659
NgoMIV GCCGGC 1 cut(s) 101
NlaIII CATG 4 cut(s) 214, 399, 562, 710
NlaIV GGNNCC 5 cut(s) 11, 100, 459, 520, 656
NmeAIII GCCGAG 1 cut(s) 278
NmuCI GTSAC 2 cut(s) 217, 551
NotI GCGGCCGC 1 cut(s) 349
NsbI TGCGCA 1 cut(s) 159
PagI TCATGA 1 cut(s) 558
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 7 cut(s) 157, 251, 302, 350, 353, 442, 705
Ple19I CGATCG 2 cut(s) 89, 145
PspFI CCCAGC 1 cut(s) 467
PspN4I GGNNCC 5 cut(s) 11, 100, 459, 520, 656
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 6 cut(s) 9, 238, 257, 518, 598, 695
PvuI CGATCG 2 cut(s) 89, 145
RsaI GTAC 3 cut(s) 312, 343, 608
RsaNI GTAC 3 cut(s) 311, 342, 607
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 727
SatI GCNGC 7 cut(s) 156, 250, 301, 349, 352, 441, 704
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 168, 659
SduI GDGCHC 2 cut(s) 141, 659
SfaNI GCATC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 215
Sse9I AATT 2 cut(s) 424, 431
SspMI CTAG 2 cut(s) 464, 512
StyD4I CCNGG 2 cut(s) 166, 657
StyI CCWWGG 2 cut(s) 172, 355
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 1 cut(s) 674
TaqI TCGA 5 cut(s) 85, 141, 204, 383, 668
TasI AATT 2 cut(s) 424, 431
TauI GCSGC 5 cut(s) 252, 303, 351, 354, 706
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 727
Tru9I TTAA 1 cut(s) 727
TscAI CASTG 2 cut(s) 167, 452
TseFI GTSAC 2 cut(s) 217, 551
TseI GCWGC 2 cut(s) 155, 440
Tsp45I GTSAC 2 cut(s) 217, 551
TspDTI ATGAA 1 cut(s) 199
TspGWI ACGGA 2 cut(s) 39, 122
TspRI CASTG 2 cut(s) 167, 452
XapI RAATTY 2 cut(s) 424, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XspI CTAG 2 cut(s) 464, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.