RchiOBHm_Chr1g0339901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Reverse (-)
31399063 .. 31401760
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56673

Sequence Viewer

Length: 1032 bp
ATGTCGAGGTACAGAGAGGTGGTTTCTGCACAGATCGGGGCTTGGCAGCTGACGGTGGTGGCCGGATTTGTGGCTGTGATGCGAATCCGATCCGGGTTCTGGATGTGTGATTGGATCCGTTCGGATCTTGTTGCAGATCCACTGGTGGTTGGTTGCTGTGTGATTCCGAACCTTGTCCTAGGTGGCTCGACGGCGGCGTTGGCTAGGATTTTTCCTCGGGCGGGCGGCGGTGTGATTGGGGACGGCGACGGAGGGAGTGGTGTCGATCTCCTTTCTGGAAGGGTGCTCACGAGGTGTGGGATGTTGGTGGTGAGTGTGGTGGTGAGGAAGGATCTCTGCCAGTTCCTTGTCGGCGATGATGTCGGGGTCCGAGATAGGCAACGGAGTGGCGGGCATGGTGGTCTGATGGTGGTGGCCGGCCTCCCTGTGCAAGGGCTATCTTGGGCTGGGGTCAGGGCTTGGGCACTTCGGGCCTTGGTCTTGTGGGCCTGTTCTTGGCCTGGCTGTCCTTGGGCCTGGGGCTTCACCCTAGGTCCATTAGGTTTTATTTCATTTACTGTTGTTTTTTATTTATACTATTTAGTTTGTTTGCGCTATTTGCGAGCAATAAGTCCCTACAATTATTGTGTAGGGCTAGTCGGGCTTTGTGTCTGTGTGTGCACTCTAAGTGCCTTGTCTGCTCTAGGTAGGCGGCGAGTTCCTTGCTTCGTCAAATGGTCGCTACCGCCTAGTGGTAGGGTGAGACTAAGTGTCGCCGGGTCTCTCCGGCGGCAACATAGTAGGAAAGCTGTGCTAAAGCTGGCAATTATGCTACGTTGTAATCGTGTTACATATCGAGTTATCTTTCCGTTATGTCACCGCTATGTCAAAGCAAATCGAGTAGCCAGTAGAGCACTCTTTGCTAGTTGGTGCTTCTTTGAATACATGTATTATGTAGAGATTCCTGATATCATTTCGGGACATACTCTAGATGCTTATTGTAATCAGGGGTTTAGGCTTAATGTCCCCCCGTGTATTCGACAGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

343

Amino Acids

37.83

Weight (kDa)

9.75

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 194, 221, 225, 228, 390, 691, 725, 769, 859
AclWI GGATC 6 cut(s) 84, 109, 122, 131, 132, 339
AcoI YGGCCR 2 cut(s) 60, 414
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 5 cut(s) 99, 221, 431, 495, 731
AflIII ACRYGT 1 cut(s) 924
AgsI TTSAA 1 cut(s) 920
AhdI GACNNNNNGTC 1 cut(s) 749
AjnI CCWGG 2 cut(s) 499, 515
AluBI AGCT 3 cut(s) 49, 788, 799
AluI AGCT 3 cut(s) 49, 788, 799
Alw21I GWGCWC 3 cut(s) 288, 662, 895
Alw26I GTCTC 2 cut(s) 736, 765
Alw44I GTGCAC 1 cut(s) 658
AlwI GGATC 6 cut(s) 84, 109, 122, 131, 132, 339
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 7 cut(s) 60, 414, 418, 471, 486, 497, 513
ApaLI GTGCAC 1 cut(s) 658
ApeKI GCWGC 1 cut(s) 46
AspA2I CCTAGG 2 cut(s) 178, 529
AspLEI GCGC 1 cut(s) 594
AspS9I GGNCC 5 cut(s) 367, 471, 486, 513, 533
AsuC2I CCSGG 2 cut(s) 94, 757
AsuHPI GGTGA 5 cut(s) 322, 334, 517, 751, 848
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 2 cut(s) 367, 533
AvrII CCTAGG 2 cut(s) 178, 529
BaeGI GKGCMC 2 cut(s) 466, 662
BamHI GGATCC 1 cut(s) 114
BauI CACGAG 1 cut(s) 289
Bbv12I GWGCWC 3 cut(s) 288, 662, 895
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 400
BceAI ACGGC 2 cut(s) 207, 259
BcgI CGANNNNNNTGC 2 cut(s) 684, 718
BciT130I CCWGG 2 cut(s) 501, 517
BcnI CCSGG 2 cut(s) 94, 757
BcoDI GTCTC 2 cut(s) 736, 765
BfaI CTAG 8 cut(s) 179, 204, 530, 635, 683, 729, 903, 968
BisI GCNGC 5 cut(s) 47, 195, 226, 692, 770
BlnI CCTAGG 2 cut(s) 178, 529
BlsI GCNGC 5 cut(s) 48, 196, 227, 693, 771
Bme1390I CCNGG 4 cut(s) 94, 501, 517, 757
Bme18I GGWCC 2 cut(s) 367, 533
BmeRI GACNNNNNGTC 1 cut(s) 749
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 5 cut(s) 367, 471, 486, 513, 533
BmiI GGNNCC 2 cut(s) 116, 368
BmrFI CCNGG 4 cut(s) 94, 501, 517, 757
BmsI GCATC 2 cut(s) 69, 961
BpuMI CCSGG 2 cut(s) 94, 757
BsaBI GATNNNNATC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 6 cut(s) 178, 215, 474, 509, 516, 529
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 221, 431, 495, 731
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 3 cut(s) 147, 340, 885
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 501, 517
BseDI CCNNGG 6 cut(s) 178, 215, 474, 509, 516, 529
BseGI GGATG 2 cut(s) 108, 306
BseJI GATNNNNATC 1 cut(s) 83
BseLI CCNNNNNNNGG 5 cut(s) 99, 221, 431, 495, 731
BseNI ACTGG 3 cut(s) 147, 340, 885
BseSI GKGCMC 2 cut(s) 466, 662
BseXI GCAGC 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 12
BshFI GGCC 7 cut(s) 62, 416, 420, 473, 488, 499, 515
BsiHKAI GWGCWC 3 cut(s) 288, 662, 895
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 5 cut(s) 63, 93, 417, 756, 766
BslFI GGGAC 4 cut(s) 254, 597, 972, 989
BslI CCNNNNNNNGG 5 cut(s) 99, 221, 431, 495, 731
BsmAI GTCTC 2 cut(s) 736, 765
BsmFI GGGAC 4 cut(s) 254, 597, 972, 989
BsnI GGCC 7 cut(s) 62, 416, 420, 473, 488, 499, 515
Bso31I GGTCTC 1 cut(s) 765
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 4 cut(s) 288, 466, 662, 895
Bsp143I GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
BspACI CCGC 9 cut(s) 194, 221, 225, 228, 390, 691, 725, 769, 859
BspANI GGCC 7 cut(s) 62, 416, 420, 473, 488, 499, 515
BspLI GGNNCC 2 cut(s) 116, 368
BspPI GGATC 6 cut(s) 84, 109, 122, 131, 132, 339
BspTNI GGTCTC 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 3 cut(s) 147, 340, 885
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 6 cut(s) 178, 215, 474, 509, 516, 529
BssMI GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
BssSI CACGAG 1 cut(s) 289
BssT1I CCWWGG 4 cut(s) 178, 474, 509, 529
Bst2BI CACGAG 1 cut(s) 289
Bst2UI CCWGG 2 cut(s) 501, 517
Bst4CI ACNGT 3 cut(s) 55, 559, 1023
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 5 cut(s) 223, 392, 418, 603, 801
BstDEI CTNAG 2 cut(s) 665, 746
BstENI CCTNNNNNAGG 1 cut(s) 429
BstF5I GGATG 2 cut(s) 108, 306
BstHHI GCGC 1 cut(s) 594
BstKTI GATC 7 cut(s) 36, 92, 117, 127, 139, 268, 334
BstMAI GTCTC 2 cut(s) 736, 765
BstMBI GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
BstMWI GCNNNNNNNGC 7 cut(s) 200, 470, 598, 640, 677, 890, 899
BstNI CCWGG 2 cut(s) 501, 517
BstNSI RCATGY 1 cut(s) 928
BstSCI CCNGG 4 cut(s) 92, 499, 515, 755
BstSLI GKGCMC 2 cut(s) 466, 662
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 4 cut(s) 114, 124, 136, 331
BstYI RGATCY 4 cut(s) 114, 124, 136, 331
BsuRI GGCC 7 cut(s) 62, 416, 420, 473, 488, 499, 515
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 2 cut(s) 108, 306
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 5 cut(s) 223, 392, 418, 603, 801
CfoI GCGC 1 cut(s) 594
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 5 cut(s) 367, 471, 486, 513, 533
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 395, 925
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 665, 746
DpnI GATC 7 cut(s) 35, 91, 116, 126, 138, 267, 333
DpnII GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
DraIII CACNNNGTG 1 cut(s) 294
DriI GACNNNNNGTC 1 cut(s) 749
EaeI YGGCCR 2 cut(s) 60, 414
Eam1105I GACNNNNNGTC 1 cut(s) 749
Eco130I CCWWGG 4 cut(s) 178, 474, 509, 529
Eco31I GGTCTC 1 cut(s) 765
Eco32I GATATC 1 cut(s) 949
Eco47I GGWCC 2 cut(s) 367, 533
Eco88I CYCGRG 1 cut(s) 216
EcoNI CCTNNNNNAGG 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 499, 515
EcoRV GATATC 1 cut(s) 949
EcoT14I CCWWGG 4 cut(s) 178, 474, 509, 529
ErhI CCWWGG 4 cut(s) 178, 474, 509, 529
FaeI CATG 2 cut(s) 398, 928
FaqI GGGAC 4 cut(s) 254, 597, 972, 989
FatI CATG 2 cut(s) 394, 924
FauI CCCGC 2 cut(s) 214, 383
Fnu4HI GCNGC 5 cut(s) 47, 195, 226, 692, 770
FokI GGATG 2 cut(s) 115, 313
FseI GGCCGGCC 1 cut(s) 420
Fsp4HI GCNGC 5 cut(s) 47, 195, 226, 692, 770
FspBI CTAG 8 cut(s) 179, 204, 530, 635, 683, 729, 903, 968
GlaI GCGC 1 cut(s) 593
GluI GCNGC 5 cut(s) 47, 195, 226, 692, 770
GsaI CCCAGC 1 cut(s) 450
HaeIII GGCC 7 cut(s) 62, 416, 420, 473, 488, 499, 515
HapII CCGG 5 cut(s) 63, 93, 417, 756, 766
HhaI GCGC 1 cut(s) 594
Hin1II CATG 2 cut(s) 398, 928
Hin6I GCGC 1 cut(s) 592
HinP1I GCGC 1 cut(s) 592
HinfI GANTC 3 cut(s) 84, 163, 940
HpaII CCGG 5 cut(s) 63, 93, 417, 756, 766
HphI GGTGA 5 cut(s) 322, 334, 517, 751, 848
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 5 cut(s) 89, 124, 168, 371, 405
Hpy188III TCNNGA 6 cut(s) 100, 276, 289, 944, 957, 968
Hpy8I GTNNAC 1 cut(s) 660
Hpy99I CGWCG 2 cut(s) 193, 251
HpyAV CCTTC 2 cut(s) 273, 322
HpyCH4III ACNGT 3 cut(s) 55, 559, 1023
HpyCH4IV ACGT 1 cut(s) 814
HpyCH4V TGCA 4 cut(s) 29, 134, 430, 660
HpyF10VI GCNNNNNNNGC 7 cut(s) 200, 470, 598, 640, 677, 890, 899
HpyF3I CTNAG 2 cut(s) 665, 746
HpySE526I ACGT 1 cut(s) 814
Hsp92II CATG 2 cut(s) 398, 928
HspAI GCGC 1 cut(s) 592
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Kzo9I GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 69, 961
MaeI CTAG 8 cut(s) 179, 204, 530, 635, 683, 729, 903, 968
MaeII ACGT 1 cut(s) 814
MaeIII GTNAC 2 cut(s) 826, 854
MalI GATC 7 cut(s) 35, 91, 116, 126, 138, 267, 333
MboI GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
MflI RGATCY 4 cut(s) 114, 124, 136, 331
MhlI GDGCHC 4 cut(s) 288, 466, 662, 895
MluCI AATT 2 cut(s) 619, 804
MnlI CCTC 6 cut(s) 10, 225, 245, 285, 318, 431
MroNI GCCGGC 1 cut(s) 416
MseI TTAA 2 cut(s) 999, 1030
MslI CAYNNNNRTG 1 cut(s) 861
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 5 cut(s) 63, 93, 417, 756, 766
MspR9I CCNGG 4 cut(s) 94, 501, 517, 757
MvaI CCWGG 2 cut(s) 501, 517
MwoI GCNNNNNNNGC 7 cut(s) 200, 470, 598, 640, 677, 890, 899
NaeI GCCGGC 1 cut(s) 418
NciI CCSGG 2 cut(s) 94, 757
NdeII GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 2 cut(s) 398, 928
NlaIV GGNNCC 2 cut(s) 116, 368
NmuCI GTSAC 1 cut(s) 854
NspI RCATGY 1 cut(s) 928
PciI ACATGT 1 cut(s) 924
PcsI WCGNNNNNNNCGW 2 cut(s) 194, 820
PdiI GCCGGC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 84, 163, 940
PkrI GCNGC 5 cut(s) 48, 196, 227, 693, 771
PscI ACATGT 1 cut(s) 924
Psp6I CCWGG 2 cut(s) 499, 515
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 499, 515
PspN4I GGNNCC 2 cut(s) 116, 368
PspPI GGNCC 5 cut(s) 367, 471, 486, 513, 533
PsuI RGATCY 4 cut(s) 114, 124, 136, 331
PvuII CAGCTG 1 cut(s) 49
RigI GGCCGGCC 1 cut(s) 420
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 861
SaqAI TTAA 2 cut(s) 999, 1030
SatI GCNGC 5 cut(s) 47, 195, 226, 692, 770
Sau3AI GATC 7 cut(s) 33, 89, 114, 124, 136, 265, 331
Sau96I GGNCC 5 cut(s) 367, 471, 486, 513, 533
ScrFI CCNGG 4 cut(s) 94, 501, 517, 757
SduI GDGCHC 4 cut(s) 288, 466, 662, 895
SfaNI GCATC 2 cut(s) 69, 961
SinI GGWCC 2 cut(s) 367, 533
SmiMI CAYNNNNRTG 1 cut(s) 861
Sse9I AATT 2 cut(s) 619, 804
SsiI CCGC 9 cut(s) 194, 221, 225, 228, 390, 691, 725, 769, 859
SspMI CTAG 8 cut(s) 179, 204, 530, 635, 683, 729, 903, 968
StyD4I CCNGG 4 cut(s) 92, 499, 515, 755
StyI CCWWGG 4 cut(s) 178, 474, 509, 529
TaaI ACNGT 3 cut(s) 55, 559, 1023
TaiI ACGT 1 cut(s) 817
TaqI TCGA 6 cut(s) 5, 188, 264, 835, 877, 1018
TasI AATT 2 cut(s) 619, 804
TauI GCSGC 4 cut(s) 197, 228, 694, 772
TfiI GAWTC 3 cut(s) 84, 163, 940
Tru1I TTAA 2 cut(s) 999, 1030
Tru9I TTAA 2 cut(s) 999, 1030
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 854
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 854
TspDTI ATGAA 2 cut(s) 540, 1016
TspGWI ACGGA 4 cut(s) 107, 264, 397, 837
TspRI CASTG 1 cut(s) 147
VneI GTGCAC 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 367, 533
XagI CCTNNNNNAGG 1 cut(s) 429
XbaI TCTAGA 1 cut(s) 967
XceI RCATGY 1 cut(s) 928
XmaJI CCTAGG 2 cut(s) 178, 529
XspI CTAG 8 cut(s) 179, 204, 530, 635, 683, 729, 903, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.