Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000267

Physical Location & Seq

Genomic Coordinates Reverse (-)

26220439 .. 26225590

Gene Structure 5152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2322 bp

ATGCAATTCTCAATGGATTTGAGAAGGCTTCCGATCTCCAAACCCGCTTCTCTCTTCTACCCAATCACACGCCCCTTAACGGGCGTGACATTCACCTTCCAACGCCGCCACGACCCGCCGCCGTTACAGCCTCCCAATCCGGGTTTGCTCAACTGGGTATCTTCTATTCTCTCAAACCCATCTTTGGATTCTTCTAAATGTGAATCTCTCATGCCCCTTTTGTCCCCTCATGAATTTGACCAGTTATTCTACTCCATTAGGTCCAATGTGAACCCCAAAACAGCTCTTCATTTCTTTCATTTTGCTTCTCAATCTTTTAAGTTTCGGTTTACTGTTCGATCCTTCTGTGTTTTGGTTCATTTGCTCATTGCTTCAAATCTTGGGCCTCCTGCGAGGTTGCTTTTGATTCGTTTGATTGATGGGAATGTCCCAGTTTTGTGTGCTGACCCCAACAGCAAGCATATTGAGATAGCCGGCGCAATGTCGGAGTTGAACAATGTGTCCCAACCGGCTCTGGGGATTCAGGCATTGGATATGTTAATTCATGTTTACTGTACCCAGTTCAAGAATTTGGGTTTTGGTTGTGCTGTTGATGTGTTTGAGCATTTTTCGGATAAGGGTGTGTTTCCGTCTTTGAAGACTTGTAATGTTTTGCTGAGTTCTTTAGTGAAGGCTAATGAACTTGAGAAGAGCTATCATGTATTTGAAGTTATGACTCGAGGTGTTTGTCCTGATGTTTTCTTGTTTACTACTGCAATTAATGCGTTTTGTAAGGGAGGGAAGGTGGATGATGCAATAGCTGTGTTCTCAAAAATGGAGAGCGTTGGTGTTGCTCCAAATGTGGTTACTTACAATAGCGTTATCCACGGGCTATGTAAGAGTAGAAGATTAGAGGAGGCTTTCCAGTTTAAGGAGAAGATGGTAAAGAATAATGTGAAGCCGAGTCTTATAATATACAGTGTGCTCATTAATGGTTTGATTAAGCTGGAGAAGTTTTATGAGGCAAATTGTGTTTTCAAGGAAATGCGTAGTTGGGGGTTTGTCCCGAATGAGGTTGTATATAACACTCTGATTAATGGGTATTGTACAATGGGAAATATTGGCGAGGCACTCAAGATAAGGGATGATATGGTATCGAATGGGGTTACCCCTAATTCTGTTACTCTGAAGTCGCTACTGCATGGATTTTGTAAAAGTAATCAATTTGAGCATGCTGAGCAATTTTTGGACAAGATGCTAGCCAGTGGTTTACCAGTCAACCAAGTTGTTTCTTACTCAGTCATTGACTGGTTATGCATGAAATCTAGGTTCGATTCTGCACTAAAATTCACTACTGAAATGTTATTAAGAAACTTTAGGCCCAGTGATAGTTTGCTTACTACATTGTTCGTTGGGCTCTGCAAAGATGGGAAGAATTTAGAGGCAATCGAACTTTGGTTTAGGCTATCGGAGAAGGGGTTTGCAGCCAACATAGCGACCACAAATGCCCTAATCCATGGACTTTGTGAATCTGGTAGCATCGAAGAGGTTGTTAGGCTACTCAAGGCAATGCTTGAGAGGGGTTTGGCATTGGATAAGTTCTCATACAACACACTCATCTTAAGTTGTTGGAAGGAGGGAAGAGTGGCAGAAGGTTTTAAGCTTAGAGAAGAGATGTCTAAGCAAGGAATTGATCCTGACATCAACACTTACAATATGCTACTGCATAGTCTATGTAGTATGGGCAAAGTGGACGATGCTGTTAAACTTTGGGTTGAATGCGAAAATCATGGTCTTGTGGCCAATGTTTATACATATGAGGTGATGATAGAAGGGTACTGTAACTCTGGTAGAATCAAAGATGCTGAACTCCTGTTTAGTAAGTTGGTGACTAAGAAAGTGGAGCCAAATTCCGTTGTTTATAATACACTAATCAGTGCATATTGTATTGATGGGAATATGATTGGAGCTCTTGGCCTATTCCATGACATGAAAAACAAGGGCATTCAACCAACTTATGCCACATATTTTTCTCTTATAAATAGGCTATGCAATATTGGCCATGTCGAGGATGCAAAAGAGCTCATTGATGAAATGAGGAGGAATGGTTTGGTGCCAAATGTCGCTTGTTATGCTGAAGTGATTTGTGGTTATTGTAAGCTAGGCCAAATGGATAAAGCGAGGAGCATTTTTCGGGAGATGTCCTCATATAACATACAACCGAATGAAATTACTTATACTGTCATGATTGATGGGTATTGTAAGCTAGGCAACATGGAAGAAAAAAATATACTTCAATGTGAGATGGCAAAAAAGGGAATTGTCCCAGATGCAGTCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001653 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009845 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

773

Amino Acids

86.62

Weight (kDa)

7.44

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	195 - 315	4.6e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	235 - 341	8e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	236 - 289	8.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	240 - 273	1.4e-11	PPR repeat
PPR_2	PF13041	244 - 293	2.2e-16	PPR repeat family
PPR_1	PF12854	276 - 308	1.8e-12	PPR repeat
PPR_2	PF13041	279 - 328	7.6e-16	PPR repeat family
PPR_3	PF13812	279 - 324	7.7e-07	Pentatricopeptide repeat domain
PPR	PF01535	282 - 312	2.7e-07	PPR repeat
PPR_3	PF13812	304 - 361	5.4e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	305 - 418	4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	314 - 362	2.8e-12	PPR repeat family
TPR_24	PF23276	338 - 422	4.6e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	338 - 394	5.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	346 - 378	6.6e-11	PPR repeat
PPR_2	PF13041	349 - 398	9e-17	PPR repeat family
PPR	PF01535	352 - 382	1.8e-07	PPR repeat
PPR_1	PF12854	380 - 412	9.3e-08	PPR repeat
PPR_2	PF13041	490 - 533	3.8e-10	PPR repeat family
PPR_2	PF13041	526 - 572	3.1e-13	PPR repeat family
PPR_1	PF12854	556 - 585	1.8e-09	PPR repeat
PPR_2	PF13041	559 - 608	2.3e-13	PPR repeat family
PPR_3	PF13812	584 - 641	2.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	591 - 621	6.6e-08	PPR repeat
PPR_2	PF13041	595 - 642	4e-12	PPR repeat family
PPR_long	PF17177	618 - 751	4.7e-11	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	622 - 726	5.2e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	626 - 658	9.2e-08	PPR repeat
PPR_2	PF13041	629 - 678	4.1e-15	PPR repeat family
PPR	PF01535	632 - 662	1.7e-08	PPR repeat
PPR_3	PF13812	653 - 708	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	660 - 693	4.4e-07	PPR repeat
PPR_2	PF13041	668 - 704	2.8e-07	PPR repeat family
PPR_1	PF12854	695 - 728	2.5e-07	PPR repeat
PPR_2	PF13041	699 - 748	4.1e-17	PPR repeat family
PPR_1	PF12854	731 - 754	1.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000267)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis	RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata	RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora	Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii	Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa	Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha	Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana	Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	950, 1902, 2018
AccB1I	GGYRCC	1 cut(s)	2092
AciI	CCGC	4 cut(s)	45, 106, 116, 119
AclWI	GGATC	2 cut(s)	333, 1667
AcoI	YGGCCR	2 cut(s)	1779, 2038
AcsI	RAATTY	5 cut(s)	233, 568, 1325, 1414, 1888
AcuI	CTGAAG	2 cut(s)	1187, 2136
AfaI	GTAC	3 cut(s)	556, 1087, 1817
AfiI	CCNNNNNNNGG	8 cut(s)	79, 80, 140, 184, 515, 910, 1051, 2047
AflII	CTTAAG	1 cut(s)	1600
AgsI	TTSAA	9 cut(s)	375, 493, 565, 637, 707, 1018, 1757, 1988, 2276
AloI	GAACNNNNNNTCC	2 cut(s)	485, 517
AluBI	AGCT	9 cut(s)	284, 693, 800, 985, 1642, 1949, 2062, 2140, 2245
AluI	AGCT	9 cut(s)	284, 693, 800, 985, 1642, 1949, 2062, 2140, 2245
Alw21I	GWGCWC	3 cut(s)	966, 1951, 2064
AlwI	GGATC	2 cut(s)	333, 1667
Ama87I	CYCGRG	1 cut(s)	717
AoxI	GGCC	6 cut(s)	383, 1358, 1779, 1954, 2038, 2143
ApeKI	GCWGC	1 cut(s)	1463
ApoI	RAATTY	5 cut(s)	233, 568, 1325, 1414, 1888
AseI	ATTAAT	3 cut(s)	759, 969, 1074
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	3 cut(s)	261, 383, 1359
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	3 cut(s)	85, 1813, 1879
AsuNHI	GCTAGC	1 cut(s)	1237
AvaI	CYCGRG	1 cut(s)	717
AvaII	GGWCC	1 cut(s)	261
BalI	TGGCCA	2 cut(s)	1781, 2040
BanI	GGYRCC	1 cut(s)	2092
BanII	GRGCYC	3 cut(s)	1398, 1951, 2064
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	3 cut(s)	966, 1951, 2064
BbvI	GCAGC	1 cut(s)	1475
BccI	CCATC	7 cut(s)	187, 413, 913, 1400, 1925, 2225, 2278
BceAI	ACGGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	4 cut(s)	1238, 1305, 2141, 2246
BfrI	CTTAAG	1 cut(s)	1600
BisI	GCNGC	3 cut(s)	106, 119, 1464
BlpI	GCTNAGC	1 cut(s)	1215
BlsI	GCNGC	3 cut(s)	107, 120, 1465
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	717
BmgT120I	GGNCC	3 cut(s)	261, 383, 1359
BmiI	GGNNCC	2 cut(s)	1884, 2094
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	4 cut(s)	163, 425, 553, 1356
BmsI	GCATC	7 cut(s)	781, 1224, 1527, 1726, 1831, 2041, 2299
BmtI	GCTAGC	1 cut(s)	1241
BmuI	ACTGGG	4 cut(s)	163, 425, 553, 1356
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	2168, 2200
BpmI	CTGGAG	1 cut(s)	1007
Bpu1102I	GCTNAGC	1 cut(s)	1215
BpuEI	CTTGAG	4 cut(s)	704, 1097, 1526, 1574
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	865, 1495
BsaXI	ACNNNNNCTCC	6 cut(s)	768, 798, 1442, 1472, 2071, 2101
Bsc4I	CCNNNNNNNGG	8 cut(s)	79, 80, 140, 184, 515, 910, 1051, 2047
Bse118I	RCCGGY	2 cut(s)	473, 508
Bse1I	ACTGG	9 cut(s)	158, 241, 431, 559, 904, 1242, 1253, 1292, 1362
Bse3DI	GCAATG	3 cut(s)	366, 486, 1554
BseDI	CCNNGG	2 cut(s)	865, 1495
BseGI	GGATG	3 cut(s)	793, 1129, 2056
BseLI	CCNNNNNNNGG	8 cut(s)	79, 80, 140, 184, 515, 910, 1051, 2047
BseMI	GCAATG	3 cut(s)	366, 486, 1554
BseMII	CTCAG	3 cut(s)	647, 1206, 1290
BseNI	ACTGG	9 cut(s)	158, 241, 431, 559, 904, 1242, 1253, 1292, 1362
BseRI	GAGGAG	3 cut(s)	908, 2092, 2176
BseXI	GCAGC	1 cut(s)	1475
BsgI	GTGCAG	1 cut(s)	1302
BshFI	GGCC	6 cut(s)	385, 1360, 1781, 1956, 2040, 2145
BshNI	GGYRCC	1 cut(s)	2092
BsiHKAI	GWGCWC	3 cut(s)	966, 1951, 2064
BsiHKCI	CYCGRG	1 cut(s)	717
BsiSI	CCGG	3 cut(s)	140, 474, 509
BslFI	GGGAC	5 cut(s)	208, 413, 487, 1028, 2288
BslI	CCNNNNNNNGG	8 cut(s)	79, 80, 140, 184, 515, 910, 1051, 2047
BsmFI	GGGAC	5 cut(s)	208, 413, 487, 1028, 2288
BsmI	GAATGC	2 cut(s)	1763, 1983
BsnI	GGCC	6 cut(s)	385, 1360, 1781, 1956, 2040, 2145
BsoBI	CYCGRG	1 cut(s)	717
Bsp1286I	GDGCHC	4 cut(s)	966, 1398, 1951, 2064
Bsp1407I	TGTACA	1 cut(s)	1085
Bsp143I	GATC	3 cut(s)	33, 338, 1672
Bsp1720I	GCTNAGC	1 cut(s)	1215
Bsp19I	CCATGG	1 cut(s)	1495
BspACI	CCGC	4 cut(s)	45, 106, 116, 119
BspANI	GGCC	6 cut(s)	385, 1360, 1781, 1956, 2040, 2145
BspCNI	CTCAG	3 cut(s)	648, 1207, 1289
BspHI	TCATGA	2 cut(s)	229, 2223
BspLI	GGNNCC	2 cut(s)	1884, 2094
BspOI	GCTAGC	1 cut(s)	1241
BspPI	GGATC	2 cut(s)	333, 1667
BspQI	GCTCTTC	2 cut(s)	291, 683
BspT107I	GGYRCC	1 cut(s)	2092
BspTI	CTTAAG	1 cut(s)	1600
BsrDI	GCAATG	3 cut(s)	366, 486, 1554
BsrFI	RCCGGY	2 cut(s)	473, 508
BsrGI	TGTACA	1 cut(s)	1085
BsrI	ACTGG	9 cut(s)	158, 241, 431, 559, 904, 1242, 1253, 1292, 1362
BssAI	RCCGGY	2 cut(s)	473, 508
BssECI	CCNNGG	2 cut(s)	865, 1495
BssMI	GATC	3 cut(s)	33, 338, 1672
BssT1I	CCWWGG	1 cut(s)	1495
Bst4CI	ACNGT	5 cut(s)	334, 554, 959, 1820, 2221
Bst6I	CTCTTC	6 cut(s)	59, 291, 683, 1518, 1615, 1644
BstAFI	CTTAAG	1 cut(s)	1600
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	1085
BstC8I	GCNNGC	4 cut(s)	458, 475, 1212, 1239
BstDEI	CTNAG	7 cut(s)	656, 1215, 1276, 1643, 1659, 1872, 2319
BstDSI	CCRYGG	2 cut(s)	865, 1495
BstEII	GGTNACC	1 cut(s)	1144
BstF5I	GGATG	3 cut(s)	793, 1129, 2056
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	3 cut(s)	36, 341, 1675
BstMBI	GATC	3 cut(s)	33, 338, 1672
BstMWI	GCNNNNNNNGC	6 cut(s)	127, 761, 1216, 1472, 2037, 2111
BstNSI	RCATGY	1 cut(s)	1214
BstPI	GGTNACC	1 cut(s)	1144
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	1 cut(s)	1475
BstV2I	GAAGAC	1 cut(s)	644
BsuRI	GGCC	6 cut(s)	385, 1360, 1781, 1956, 2040, 2145
BtgI	CCRYGG	2 cut(s)	865, 1495
BtsCI	GGATG	3 cut(s)	793, 1129, 2056
BtsIMutI	CAGTG	4 cut(s)	964, 1249, 1369, 1921
Cac8I	GCNNGC	4 cut(s)	458, 475, 1212, 1239
CciI	TCATGA	2 cut(s)	229, 2223
CfoI	GCGC	1 cut(s)	479
Cfr10I	RCCGGY	2 cut(s)	473, 508
Cfr13I	GGNCC	3 cut(s)	261, 383, 1359
Csp6I	GTAC	3 cut(s)	555, 1086, 1816
CviQI	GTAC	3 cut(s)	555, 1086, 1816
DdeI	CTNAG	7 cut(s)	656, 1215, 1276, 1643, 1659, 1872, 2319
DpnI	GATC	3 cut(s)	35, 340, 1674
DpnII	GATC	3 cut(s)	33, 338, 1672
EaeI	YGGCCR	2 cut(s)	1779, 2038
Eam1104I	CTCTTC	6 cut(s)	59, 291, 683, 1518, 1615, 1644
EarI	CTCTTC	6 cut(s)	59, 291, 683, 1518, 1615, 1644
Ecl136II	GAGCTC	2 cut(s)	1949, 2062
Eco130I	CCWWGG	1 cut(s)	1495
Eco24I	GRGCYC	3 cut(s)	1398, 1951, 2064
Eco47I	GGWCC	1 cut(s)	261
Eco53kI	GAGCTC	2 cut(s)	1949, 2062
Eco57I	CTGAAG	2 cut(s)	1187, 2136
Eco88I	CYCGRG	1 cut(s)	717
Eco91I	GGTNACC	1 cut(s)	1144
EcoICRI	GAGCTC	2 cut(s)	1949, 2062
EcoO65I	GGTNACC	1 cut(s)	1144
EcoT14I	CCWWGG	1 cut(s)	1495
EcoT22I	ATGCAT	1 cut(s)	1298
EcoT38I	GRGCYC	3 cut(s)	1398, 1951, 2064
ErhI	CCWWGG	1 cut(s)	1495
FaqI	GGGAC	5 cut(s)	208, 413, 487, 1028, 2288
FauI	CCCGC	2 cut(s)	52, 123
FauNDI	CATATG	1 cut(s)	1795
Fnu4HI	GCNGC	3 cut(s)	106, 119, 1464
FokI	GGATG	3 cut(s)	800, 1136, 2063
FriOI	GRGCYC	3 cut(s)	1398, 1951, 2064
Fsp4HI	GCNGC	3 cut(s)	106, 119, 1464
FspBI	CTAG	4 cut(s)	1238, 1305, 2141, 2246
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	3 cut(s)	106, 119, 1464
GsuI	CTGGAG	1 cut(s)	1007
HaeIII	GGCC	6 cut(s)	385, 1360, 1781, 1956, 2040, 2145
HapII	CCGG	3 cut(s)	140, 474, 509
HhaI	GCGC	1 cut(s)	479
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	1 cut(s)	1258
HindII	GTYRAC	1 cut(s)	1258
HindIII	AAGCTT	1 cut(s)	1640
HinfI	GANTC	9 cut(s)	188, 203, 406, 520, 715, 943, 1313, 1508, 1833
HpaII	CCGG	3 cut(s)	140, 474, 509
HphI	GGTGA	3 cut(s)	85, 1813, 1879
Hpy166II	GTNNAC	7 cut(s)	271, 330, 550, 747, 1250, 1258, 1732
Hpy188I	TCNGA	6 cut(s)	33, 487, 613, 1071, 1167, 1450
Hpy188III	TCNNGA	8 cut(s)	230, 565, 731, 1045, 1114, 1676, 2174, 2224
Hpy8I	GTNNAC	7 cut(s)	271, 330, 550, 747, 1250, 1258, 1732
HpyAV	CCTTC	9 cut(s)	18, 106, 352, 664, 775, 1447, 1606, 1625, 1805
HpyCH4III	ACNGT	5 cut(s)	334, 554, 959, 1820, 2221
HpyF10VI	GCNNNNNNNGC	6 cut(s)	127, 761, 1216, 1472, 2037, 2111
HpyF3I	CTNAG	7 cut(s)	656, 1215, 1276, 1643, 1659, 1872, 2319
HspAI	GCGC	1 cut(s)	477
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	33, 338, 1672
LguI	GCTCTTC	2 cut(s)	291, 683
LmnI	GCTCC	4 cut(s)	838, 1882, 1946, 2163
Lsp1109I	GCAGC	1 cut(s)	1475
LweI	GCATC	7 cut(s)	781, 1224, 1527, 1726, 1831, 2041, 2299
MaeI	CTAG	4 cut(s)	1238, 1305, 2141, 2246
MaeIII	GTNAC	8 cut(s)	85, 123, 844, 1144, 1159, 1820, 1867, 2314
MalI	GATC	3 cut(s)	35, 340, 1674
MboI	GATC	3 cut(s)	33, 338, 1672
MhlI	GDGCHC	4 cut(s)	966, 1398, 1951, 2064
MlsI	TGGCCA	2 cut(s)	1781, 2040
MluNI	TGGCCA	2 cut(s)	1781, 2040
MlyI	GAGTC	2 cut(s)	709, 952
MmeI	TCCRAC	3 cut(s)	124, 465, 1589
Mox20I	TGGCCA	2 cut(s)	1781, 2040
Mph1103I	ATGCAT	1 cut(s)	1298
MroNI	GCCGGC	1 cut(s)	473
MscI	TGGCCA	2 cut(s)	1781, 2040
Msp20I	TGGCCA	2 cut(s)	1781, 2040
MspCI	CTTAAG	1 cut(s)	1600
MspI	CCGG	3 cut(s)	140, 474, 509
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	2 cut(s)	1763, 1983
MwoI	GCNNNNNNNGC	6 cut(s)	127, 761, 1216, 1472, 2037, 2111
NaeI	GCCGGC	1 cut(s)	475
NciI	CCSGG	1 cut(s)	141
NcoI	CCATGG	1 cut(s)	1495
NdeI	CATATG	1 cut(s)	1795
NdeII	GATC	3 cut(s)	33, 338, 1672
NgoMIV	GCCGGC	1 cut(s)	473
NheI	GCTAGC	1 cut(s)	1237
NlaIV	GGNNCC	2 cut(s)	1884, 2094
NmeAIII	GCCGAG	1 cut(s)	966
NmuCI	GTSAC	3 cut(s)	85, 1867, 2314
NsiI	ATGCAT	1 cut(s)	1298
NspI	RCATGY	1 cut(s)	1214
PaeI	GCATGC	1 cut(s)	1214
PaeR7I	CTCGAG	1 cut(s)	717
PagI	TCATGA	2 cut(s)	229, 2223
PciSI	GCTCTTC	2 cut(s)	291, 683
PctI	GAATGC	2 cut(s)	1763, 1983
PdiI	GCCGGC	1 cut(s)	475
PfeI	GAWTC	7 cut(s)	188, 203, 406, 520, 1313, 1508, 1833
PkrI	GCNGC	3 cut(s)	107, 120, 1465
PleI	GAGTC	2 cut(s)	709, 951
PpsI	GAGTC	2 cut(s)	709, 951
PshBI	ATTAAT	3 cut(s)	759, 969, 1074
PsiI	TTATAA	3 cut(s)	950, 1902, 2018
Psp124BI	GAGCTC	2 cut(s)	1951, 2064
PspEI	GGTNACC	1 cut(s)	1144
PspN4I	GGNNCC	2 cut(s)	1884, 2094
PspPI	GGNCC	3 cut(s)	261, 383, 1359
PspXI	VCTCGAGB	1 cut(s)	717
RsaI	GTAC	3 cut(s)	556, 1087, 1817
RsaNI	GTAC	3 cut(s)	555, 1086, 1816
SacI	GAGCTC	2 cut(s)	1951, 2064
SapI	GCTCTTC	2 cut(s)	291, 683
SatI	GCNGC	3 cut(s)	106, 119, 1464
Sau3AI	GATC	3 cut(s)	33, 338, 1672
Sau96I	GGNCC	3 cut(s)	261, 383, 1359
SchI	GAGTC	2 cut(s)	709, 952
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	4 cut(s)	966, 1398, 1951, 2064
SfaNI	GCATC	7 cut(s)	781, 1224, 1527, 1726, 1831, 2041, 2299
Sfr274I	CTCGAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	261
SlaI	CTCGAG	1 cut(s)	717
SmlI	CTYRAG	6 cut(s)	683, 717, 1112, 1541, 1553, 1600
SmoI	CTYRAG	6 cut(s)	683, 717, 1112, 1541, 1553, 1600
SphI	GCATGC	1 cut(s)	1214
SsiI	CCGC	4 cut(s)	45, 106, 116, 119
SspI	AATATT	2 cut(s)	1099, 2035
SspMI	CTAG	4 cut(s)	1238, 1305, 2141, 2246
SstI	GAGCTC	2 cut(s)	1951, 2064
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	1495
TaaI	ACNGT	5 cut(s)	334, 554, 959, 1820, 2221
TaqI	TCGA	7 cut(s)	337, 718, 1136, 1311, 1428, 1521, 2046
TatI	WGTACW	1 cut(s)	1085
TauI	GCSGC	2 cut(s)	108, 121
TfiI	GAWTC	7 cut(s)	188, 203, 406, 520, 1313, 1508, 1833
TscAI	CASTG	4 cut(s)	964, 1249, 1369, 1921
TseFI	GTSAC	3 cut(s)	85, 1867, 2314
TseI	GCWGC	1 cut(s)	1463
Tsp45I	GTSAC	3 cut(s)	85, 1867, 2314
TspGWI	ACGGA	2 cut(s)	618, 1882
TspRI	CASTG	4 cut(s)	964, 1249, 1369, 1921
Vha464I	CTTAAG	1 cut(s)	1600
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	3 cut(s)	759, 969, 1074
XapI	RAATTY	5 cut(s)	233, 568, 1325, 1414, 1888
XceI	RCATGY	1 cut(s)	1214
XhoI	CTCGAG	1 cut(s)	717
XspI	CTAG	4 cut(s)	1238, 1305, 2141, 2246
Zsp2I	ATGCAT	1 cut(s)	1298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.