FvH4_4g07610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000267
Physical Location & Seq
Reverse (-)
7020905 .. 7021834
930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07610.t1

Sequence Viewer

Length: 930 bp
ATGTTGACTGGTGTGCTACCGAGCTCCCTCGGCGACCTGTTTGGTGAGGCTGAGGCGAGTACAGGTACGGTGTTAGGGATGGCGTTCATTGGGGCCGGCATGCATTTGCCTACTACGTGCAGGGTTGGTCGGCGAGAGGATAGGCAACCACAGATTTGGCAGCAGACGGACGCAGATGAGATCTCGACGGCTTGGCGGCGGGGATCGAATAAGTTTTCGATCCGAATTGGTTCCGTTTCGTCGGATCTAGGCATGAGCCCGGTCTATATCGTGGCCTCCTCGAGGAGCGATGTGGTGGTCGGGCTCTGGAGAGCGGTGGTCCGGCTGAGGGAGGGTGGTGGTTACAGGGTATGGACGGCGACGACGGTGGTAGCAGTAGGACTAGGTCGATGGTGGCTGACTACAAGGGATCCTCTTCTCCCTAGGTTTGTTGTTTGGGCTTGGGCCTGGACTGTTTTAACTATGTTTTGTTTTGTTTTTCATTCAGTAATGTCTAGTTGGTTAATGAGGTGTGGCTCTATGCCGTCAATAAGCTCTTTTACTAAAGGGCAATGTGGGCTATGTCCTGACAAGCGCACGCAGAGTGTCGTGATTGCGTTATTGAGGCAGCGAGTTCTTTGCTTAGTCAAATGGTCGCAGCCTCTTTTTGACAGAGTGAAATCTTCGCATAACGGGAAAGCAGATATACATAGTCTTTTATGGCTCCATATGAGTTTTAGCTTTCTGTTATGCCGCCATGTTTTATGCAAAGCAAATAGAGTCGTCAATGATATGCTCTTTGTTAATTTGTTATTGCTTGAATGCATAGGTTGTGTAGGGTCTCCTAATATTGTTTTTAGGTGTTCTTGCATTATGGGGTTTAGGCTTTATGTCCCCTCCCTTGTATTCTGCGATTTCAGTAATAGTAACGGCGTGAGGGCTGCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

9.57

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 314
AciI CCGC 4 cut(s) 196, 199, 314, 733
AclWI GGATC 5 cut(s) 211, 214, 252, 404, 417
AfaI GTAC 2 cut(s) 61, 67
AfiI CCNNNNNNNGG 2 cut(s) 282, 328
AgsI TTSAA 1 cut(s) 800
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 3 cut(s) 24, 534, 720
AluI AGCT 3 cut(s) 24, 534, 720
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 825
AlwI GGATC 5 cut(s) 211, 214, 252, 404, 417
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 3 cut(s) 93, 273, 444
ApeKI GCWGC 4 cut(s) 160, 607, 637, 920
Asp700I GAANNNNTTC 1 cut(s) 229
AspA2I CCTAGG 1 cut(s) 422
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 3 cut(s) 93, 319, 444
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 319
AvrII CCTAGG 1 cut(s) 422
BamHI GGATCC 1 cut(s) 409
BanII GRGCYC 3 cut(s) 26, 260, 306
Bbv12I GWGCWC 1 cut(s) 26
BbvCI CCTCAGC 2 cut(s) 51, 326
BbvI GCAGC 4 cut(s) 172, 619, 649, 907
BccI CCATC 2 cut(s) 73, 384
BceAI ACGGC 4 cut(s) 204, 372, 508, 925
BcgI CGANNNNNNTGC 2 cut(s) 600, 634
BciT130I CCWGG 1 cut(s) 448
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 5 cut(s) 248, 383, 423, 495, 928
BglII AGATCT 1 cut(s) 180
BisI GCNGC 6 cut(s) 161, 197, 608, 638, 733, 921
BlnI CCTAGG 1 cut(s) 422
BlsI GCNGC 6 cut(s) 162, 198, 609, 639, 734, 922
Bme1390I CCNGG 2 cut(s) 260, 448
Bme18I GGWCC 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 93, 319, 444
BmiI GGNNCC 4 cut(s) 94, 232, 411, 704
BmrFI CCNGG 2 cut(s) 260, 448
BpmI CTGGAG 1 cut(s) 328
Bpu10I CCTNAGC 2 cut(s) 51, 326
BpuMI CCSGG 1 cut(s) 260
BsaAI YACGTR 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 825
BsaJI CCNNGG 2 cut(s) 28, 422
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 328
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 557
BseBI CCWGG 1 cut(s) 448
BseDI CCNNGG 2 cut(s) 28, 422
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 2 cut(s) 282, 328
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 42, 317
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 2 cut(s) 268, 298
BseXI GCAGC 4 cut(s) 172, 619, 649, 907
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 95, 275, 446
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 3 cut(s) 96, 260, 322
BslFI GGGAC 1 cut(s) 857
BslI CCNNNNNNNGG 2 cut(s) 282, 328
BsmAI GTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 857
BsmI GAATGC 1 cut(s) 806
BsnI GGCC 3 cut(s) 95, 275, 446
Bso31I GGTCTC 1 cut(s) 825
BsoBI CYCGRG 1 cut(s) 280
Bsp1286I GDGCHC 3 cut(s) 26, 260, 306
Bsp143I GATC 5 cut(s) 180, 203, 219, 244, 409
BspACI CCGC 4 cut(s) 196, 199, 314, 733
BspANI GGCC 3 cut(s) 95, 275, 446
BspCNI CTCAG 2 cut(s) 43, 318
BspLI GGNNCC 4 cut(s) 94, 232, 411, 704
BspPI GGATC 5 cut(s) 211, 214, 252, 404, 417
BspTNI GGTCTC 1 cut(s) 825
BsrBI CCGCTC 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 28, 422
BssMI GATC 5 cut(s) 180, 203, 219, 244, 409
BssT1I CCWWGG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 70, 367, 454
Bst6I CTCTTC 1 cut(s) 420
BstBAI YACGTR 1 cut(s) 117
BstC8I GCNNGC 3 cut(s) 97, 101, 578
BstDEI CTNAG 3 cut(s) 51, 326, 622
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 1 cut(s) 84
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 5 cut(s) 183, 206, 222, 247, 412
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 5 cut(s) 180, 203, 219, 244, 409
BstMWI GCNNNNNNNGC 2 cut(s) 30, 556
BstNI CCWGG 1 cut(s) 448
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 2 cut(s) 258, 446
BstV1I GCAGC 4 cut(s) 172, 619, 649, 907
BstX2I RGATCY 3 cut(s) 180, 244, 409
BstXI CCANNNNNNTGG 1 cut(s) 156
BstYI RGATCY 3 cut(s) 180, 244, 409
BsuRI GGCC 3 cut(s) 95, 275, 446
BtgZI GCGATG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 3 cut(s) 97, 101, 578
CfoI GCGC 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 93, 319, 444
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 60, 66
CviAII CATG 3 cut(s) 100, 253, 737
CviQI GTAC 2 cut(s) 60, 66
DdeI CTNAG 3 cut(s) 51, 326, 622
DpnI GATC 5 cut(s) 182, 205, 221, 246, 411
DpnII GATC 5 cut(s) 180, 203, 219, 244, 409
Eam1104I CTCTTC 1 cut(s) 420
EarI CTCTTC 1 cut(s) 420
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 422
Eco24I GRGCYC 3 cut(s) 26, 260, 306
Eco31I GGTCTC 1 cut(s) 825
Eco47I GGWCC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 24
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 422
EcoT22I ATGCAT 2 cut(s) 105, 806
EcoT38I GRGCYC 3 cut(s) 26, 260, 306
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 3 cut(s) 103, 256, 740
FaqI GGGAC 1 cut(s) 857
FatI CATG 3 cut(s) 99, 252, 736
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 1 cut(s) 708
Fnu4HI GCNGC 6 cut(s) 161, 197, 608, 638, 733, 921
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 3 cut(s) 26, 260, 306
Fsp4HI GCNGC 6 cut(s) 161, 197, 608, 638, 733, 921
FspBI CTAG 5 cut(s) 248, 383, 423, 495, 928
GlaI GCGC 1 cut(s) 575
GluI GCNGC 6 cut(s) 161, 197, 608, 638, 733, 921
GsuI CTGGAG 1 cut(s) 328
HaeIII GGCC 3 cut(s) 95, 275, 446
HapII CCGG 3 cut(s) 96, 260, 322
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 576
Hin1II CATG 3 cut(s) 103, 256, 740
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 759
HpaII CCGG 3 cut(s) 96, 260, 322
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 224, 244
Hpy188III TCNNGA 4 cut(s) 184, 307, 566, 589
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 4 cut(s) 190, 244, 364, 367
HpyCH4III ACNGT 3 cut(s) 70, 367, 454
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 5 cut(s) 103, 120, 747, 804, 849
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 556
HpyF3I CTNAG 3 cut(s) 51, 326, 622
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 3 cut(s) 103, 256, 740
HspAI GCGC 1 cut(s) 574
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 5 cut(s) 180, 203, 219, 244, 409
LmnI GCTCC 3 cut(s) 29, 285, 708
Lsp1109I GCAGC 4 cut(s) 172, 619, 649, 907
MaeI CTAG 5 cut(s) 248, 383, 423, 495, 928
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 341, 905
MalI GATC 5 cut(s) 182, 205, 221, 246, 411
MbiI CCGCTC 1 cut(s) 314
MboI GATC 5 cut(s) 180, 203, 219, 244, 409
MboII GAAGA 2 cut(s) 407, 654
MflI RGATCY 3 cut(s) 180, 244, 409
MhlI GDGCHC 3 cut(s) 26, 260, 306
MluCI AATT 2 cut(s) 225, 784
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 1 cut(s) 222
Mph1103I ATGCAT 2 cut(s) 105, 806
MroNI GCCGGC 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 3 cut(s) 458, 503, 783
MspI CCGG 3 cut(s) 96, 260, 322
MspR9I CCNGG 2 cut(s) 260, 448
Mva1269I GAATGC 1 cut(s) 806
MvaI CCWGG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 30, 556
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 260
NdeI CATATG 1 cut(s) 708
NdeII GATC 5 cut(s) 180, 203, 219, 244, 409
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 3 cut(s) 103, 256, 740
NlaIV GGNNCC 4 cut(s) 94, 232, 411, 704
NmeAIII GCCGAG 1 cut(s) 9
NsiI ATGCAT 2 cut(s) 105, 806
NspI RCATGY 1 cut(s) 103
PaeI GCATGC 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 280
PctI GAATGC 1 cut(s) 806
PdiI GCCGGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 229
PflFI GACNNNGTC 1 cut(s) 384
PkrI GCNGC 6 cut(s) 162, 198, 609, 639, 734, 922
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
Ppu21I YACGTR 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 446
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 4 cut(s) 94, 232, 411, 704
PspPI GGNCC 3 cut(s) 93, 319, 444
PspXI VCTCGAGB 1 cut(s) 280
PsuI RGATCY 3 cut(s) 180, 244, 409
PsyI GACNNNGTC 1 cut(s) 384
RsaI GTAC 2 cut(s) 61, 67
RsaNI GTAC 2 cut(s) 60, 66
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 458, 503, 783
SatI GCNGC 6 cut(s) 161, 197, 608, 638, 733, 921
Sau3AI GATC 5 cut(s) 180, 203, 219, 244, 409
Sau96I GGNCC 3 cut(s) 93, 319, 444
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 2 cut(s) 260, 448
SduI GDGCHC 3 cut(s) 26, 260, 306
Sfr274I CTCGAG 1 cut(s) 280
SinI GGWCC 1 cut(s) 319
SlaI CTCGAG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SphI GCATGC 1 cut(s) 103
Sse9I AATT 2 cut(s) 225, 784
SsiI CCGC 4 cut(s) 196, 199, 314, 733
SspI AATATT 1 cut(s) 829
SspMI CTAG 5 cut(s) 248, 383, 423, 495, 928
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 258, 446
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 3 cut(s) 70, 367, 454
TaiI ACGT 1 cut(s) 119
TaqI TCGA 5 cut(s) 185, 206, 218, 281, 388
TasI AATT 2 cut(s) 225, 784
TatI WGTACW 1 cut(s) 59
TauI GCSGC 2 cut(s) 199, 735
Tru1I TTAA 3 cut(s) 458, 503, 783
Tru9I TTAA 3 cut(s) 458, 503, 783
TseI GCWGC 4 cut(s) 160, 607, 637, 920
TspDTI ATGAA 2 cut(s) 76, 470
TspGWI ACGGA 2 cut(s) 182, 223
Tth111I GACNNNGTC 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 280
XceI RCATGY 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 5 cut(s) 248, 383, 423, 495, 928
Zsp2I ATGCAT 2 cut(s) 105, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.