RchiOBHm_Chr6g0280951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000267
Physical Location & Seq
Forward (+)
44328390 .. 44328897
508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25197

Sequence Viewer

Length: 498 bp
ATGGTGTTGGGCCCAATTAGGGCTGTATTGCTTTTAATTTTCAGTTTGTTTGGTTCGTTAGTTGCAATTTATTTTTTGCTTTTAATAAGTCCTGACCATGTTTTGGGTTGGAAATGTGGGCTTCGTCCCGGCTTGCGCACCTTGCGTGCCATGTCTGCTCTAGGTAGGAGGCGAGTTCCTTACTTTGTCAAATGGTCGCAGCCTCTTAGTGGCAGAATGAAACTAAGTGTCACCGAGTTATATTTCCAGTGGCAGCATACTAGGAAAGCTGATAGTATTGGTTACTCATGGCTCCAAGTGAGCATTATCTTTTCGGTTTGTCACCACAATTGTAAAGCGAATGGAGTAGCTCGTAGAGCACTCTTCGCTAAAGGGTGCATGTTAGAATGCATATTCATAGATGAGACGCTTGTTATTATCTCAGGTGGGTCTCTTGAGGCTTATTGTAATTTGGGGTTAAGGCACTATGTCCTCCAGTGTATTCTACGGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.74

Weight (kDa)

9.83

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 103
AfiI CCNNNNNNNGG 3 cut(s) 19, 103, 209
AluBI AGCT 2 cut(s) 269, 350
AluI AGCT 2 cut(s) 269, 350
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 2 cut(s) 398, 435
AoxI GGCC 1 cut(s) 10
ApaI GGGCCC 1 cut(s) 14
ApeKI GCWGC 2 cut(s) 199, 253
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 10, 11
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 223, 314
BaeGI GKGCMC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 211, 265
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 398, 435
BfaI CTAG 2 cut(s) 161, 261
BisI GCNGC 2 cut(s) 200, 254
BlsI GCNGC 2 cut(s) 201, 255
Bme1390I CCNGG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 10, 11
BmiI GGNNCC 2 cut(s) 12, 293
BmrFI CCNGG 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 435
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 103, 209
Bse1I ACTGG 2 cut(s) 247, 475
BseLI CCNNNNNNNGG 3 cut(s) 19, 103, 209
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 247, 475
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 2 cut(s) 211, 265
BshFI GGCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 19, 103, 209
BsmAI GTCTC 2 cut(s) 398, 435
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 435
Bsp120I GGGCCC 1 cut(s) 10
Bsp1286I GDGCHC 2 cut(s) 14, 361
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 434
BspLI GGNNCC 2 cut(s) 12, 293
BspTNI GGTCTC 1 cut(s) 435
BsrI ACTGG 2 cut(s) 247, 475
Bst4CI ACNGT 1 cut(s) 489
Bst6I CTCTTC 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 134, 147
BstDEI CTNAG 3 cut(s) 206, 224, 421
BstHHI GCGC 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 398, 435
BstMWI GCNNNNNNNGC 4 cut(s) 142, 155, 356, 365
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 14
BstV1I GCAGC 2 cut(s) 211, 265
BsuRI GGCC 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 254, 482
Cac8I GCNNGC 2 cut(s) 134, 147
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 10, 11
CseI GACGC 1 cut(s) 415
CviAII CATG 4 cut(s) 98, 151, 288, 379
CviJI RGCY 9 cut(s) 12, 23, 121, 132, 202, 269, 292, 350, 440
CviKI_1 RGCY 9 cut(s) 12, 23, 121, 132, 202, 269, 292, 350, 440
DdeI CTNAG 3 cut(s) 206, 224, 421
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco24I GRGCYC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 435
EcoT22I ATGCAT 1 cut(s) 392
EcoT38I GRGCYC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 4 cut(s) 101, 154, 291, 382
FaiI YATR 9 cut(s) 99, 152, 241, 258, 289, 380, 392, 398, 468
FaqI GGGAC 1 cut(s) 111
FatI CATG 4 cut(s) 97, 150, 287, 378
Fnu4HI GCNGC 2 cut(s) 200, 254
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 2 cut(s) 200, 254
FspBI CTAG 2 cut(s) 161, 261
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 1 cut(s) 137
GluI GCNGC 2 cut(s) 200, 254
GsuI CTGGAG 1 cut(s) 458
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 415
HhaI GCGC 1 cut(s) 138
Hin1II CATG 4 cut(s) 101, 154, 291, 382
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 223, 314
Hpy188III TCNNGA 2 cut(s) 92, 434
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 3 cut(s) 65, 378, 390
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 155, 356, 365
HpyF3I CTNAG 3 cut(s) 206, 224, 421
Hsp92II CATG 4 cut(s) 101, 154, 291, 382
HspAI GCGC 1 cut(s) 136
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 5 cut(s) 105, 142, 260, 408, 488
Lsp1109I GCAGC 2 cut(s) 211, 265
MaeI CTAG 2 cut(s) 161, 261
MaeIII GTNAC 3 cut(s) 229, 281, 320
MboII GAAGA 1 cut(s) 355
MfeI CAATTG 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 14, 361
MluCI AATT 5 cut(s) 15, 36, 66, 328, 448
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 4 cut(s) 162, 213, 430, 482
Mph1103I ATGCAT 1 cut(s) 392
MseI TTAA 4 cut(s) 35, 83, 458, 496
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 392
MwoI GCNNNNNNNGC 4 cut(s) 142, 155, 356, 365
NciI CCSGG 1 cut(s) 129
NlaIII CATG 4 cut(s) 101, 154, 291, 382
NlaIV GGNNCC 2 cut(s) 12, 293
NmuCI GTSAC 2 cut(s) 229, 320
NsbI TGCGCA 1 cut(s) 137
NsiI ATGCAT 1 cut(s) 392
NspI RCATGY 1 cut(s) 382
PctI GAATGC 1 cut(s) 392
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 2 cut(s) 201, 255
PspN4I GGNNCC 2 cut(s) 12, 293
PspOMI GGGCCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 10, 11
SaqAI TTAA 4 cut(s) 35, 83, 458, 496
SatI GCNGC 2 cut(s) 200, 254
Sau96I GGNCC 2 cut(s) 10, 11
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 2 cut(s) 14, 361
SetI ASST 5 cut(s) 143, 166, 271, 352, 427
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 15, 36, 66, 328, 448
SspMI CTAG 2 cut(s) 161, 261
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 489
TasI AATT 5 cut(s) 15, 36, 66, 328, 448
Tru1I TTAA 4 cut(s) 35, 83, 458, 496
Tru9I TTAA 4 cut(s) 35, 83, 458, 496
TscAI CASTG 2 cut(s) 254, 482
TseFI GTSAC 2 cut(s) 229, 320
TseI GCWGC 2 cut(s) 199, 253
Tsp45I GTSAC 2 cut(s) 229, 320
TspDTI ATGAA 3 cut(s) 233, 385, 482
TspRI CASTG 2 cut(s) 254, 482
Van91I CCANNNNNTGG 1 cut(s) 103
XceI RCATGY 1 cut(s) 382
XspI CTAG 2 cut(s) 161, 261
Zsp2I ATGCAT 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.