RchiOBHm_Chr1g0367541
ERF Family

Permeases of the major facilitator superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Forward (+)
57857445 .. 57858449
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59200

Sequence Viewer

Length: 822 bp
ATGTTTTCAGACGGCAAGGAATGTTTTGGCCGAGTTTTGGCCGGTGTTTCGACTGATCCATTCAATCCGGCTCGGATCCGATCTGCGTTGAGATTGGGTGTGTTGGATCGTGGGATAGGTAGCAAGGCTTGGCAAGGGTTGGCTAGGGACAGGCTGATTAGAGGGTTGAGATGGAGGGATGGAGTCGCTGTGTTTGCTGCGTCATTGATCCGTGGTTCTGCGGCCTTGTTTTCTTTGCCAATGAGTTGGCTGCTTGGGCTCAGGTCGGAGATTGGGCTGACTGTTCCGGTGGCTGGGATTTGGAGGGAATTCTGGGCTAGGCGGAGGCGCAGGGCTGGTGGCGCAGTGCGGGTGGCAGCGTTGATAGGTCTGTGGTGGTGCTTGATTGGGCTGGACCCGTGCTTCCTCCTTGCTGGGTCTAATGGTTCTTGGGCCTGGGCTTTGGTTCTGGGCCCATACTTTTATTATATTATGTTTTATTGTTTATTAATTTTAGTACGATGTGGCTTTATGCCGGCACTAAGTCCCTATCTCTTTATGGTAGGGCGACGTGGACGTTGTCTCGGTATGCACACTCAGTGTGCCTTGTCTAGCCTAGCGAGGCGGCGAGTTATTTGCTTGATCAAATGGACGCAATCTCCTAGTGGCAGGATGAAATTGAGTGCCACCGGATTTATTTCTGTGCGGCAACATAGTGGGAAAGCTGTATTATTTGTAATGATGCTTCTTCATTATAGAGTTATCTTTCCGGTATGTCACCGCTCTGTCAAAGCAAATGTAGTAGTCATTCTGTTGAGAGAAAATCGCACACAGCGAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Sugar_tr

Protein Analysis

273

Amino Acids

30.58

Weight (kDa)

11.46

Isoelectric Point (pI)

56.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 762
AciI CCGC 6 cut(s) 221, 322, 349, 604, 685, 760
AclWI GGATC 5 cut(s) 50, 70, 83, 114, 202
AcoI YGGCCR 2 cut(s) 28, 39
AcsI RAATTY 1 cut(s) 308
AdeI CACNNNGTG 1 cut(s) 579
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 2 cut(s) 37, 293
AgsI TTSAA 1 cut(s) 64
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 1 cut(s) 704
AluI AGCT 1 cut(s) 704
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 5 cut(s) 50, 70, 83, 114, 202
AoxI GGCC 5 cut(s) 28, 39, 222, 432, 451
ApaI GGGCCC 1 cut(s) 455
ApeKI GCWGC 3 cut(s) 197, 250, 356
ApoI RAATTY 1 cut(s) 308
AseI ATTAAT 1 cut(s) 488
AspLEI GCGC 2 cut(s) 330, 344
AspS9I GGNCC 4 cut(s) 394, 432, 451, 452
AsuHPI GGTGA 1 cut(s) 749
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 455
BamHI GGATCC 1 cut(s) 75
BanII GRGCYC 2 cut(s) 261, 455
BarI GAAGNNNNNNTAC 2 cut(s) 708, 740
BbvI GCAGC 3 cut(s) 184, 237, 368
BccI CCATC 2 cut(s) 165, 173
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BciT130I CCWGG 1 cut(s) 436
BclI TGATCA 1 cut(s) 621
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 5 cut(s) 144, 318, 591, 596, 642
BisI GCNGC 6 cut(s) 198, 222, 251, 357, 605, 686
BlsI GCNGC 6 cut(s) 199, 223, 252, 358, 606, 687
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 394
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 4 cut(s) 394, 432, 451, 452
BmiI GGNNCC 3 cut(s) 77, 396, 453
BmrFI CCNGG 1 cut(s) 436
BmsI GCATC 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 211, 435
BsaWI WCCGGW 3 cut(s) 286, 668, 748
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 622, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 293
Bse118I RCCGGY 2 cut(s) 41, 514
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 2 cut(s) 211, 435
BseGI GGATG 2 cut(s) 184, 657
BseLI CCNNNNNNNGG 2 cut(s) 37, 293
BseMII CTCAG 2 cut(s) 274, 590
BseSI GKGCMC 1 cut(s) 455
BseXI GCAGC 3 cut(s) 184, 237, 368
BseYI CCCAGC 2 cut(s) 293, 413
BshFI GGCC 5 cut(s) 30, 41, 224, 434, 453
BsiSI CCGG 6 cut(s) 42, 68, 287, 515, 669, 749
BslFI GGGAC 2 cut(s) 161, 510
BslI CCNNNNNNNGG 2 cut(s) 37, 293
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 161, 510
BsnI GGCC 5 cut(s) 30, 41, 224, 434, 453
Bsp120I GGGCCC 1 cut(s) 451
Bsp1286I GDGCHC 2 cut(s) 261, 455
Bsp143I GATC 6 cut(s) 55, 75, 80, 106, 207, 621
BspACI CCGC 6 cut(s) 221, 322, 349, 604, 685, 760
BspANI GGCC 5 cut(s) 30, 41, 224, 434, 453
BspCNI CTCAG 2 cut(s) 273, 589
BspLI GGNNCC 3 cut(s) 77, 396, 453
BspPI GGATC 5 cut(s) 50, 70, 83, 114, 202
BsrBI CCGCTC 1 cut(s) 762
BsrFI RCCGGY 2 cut(s) 41, 514
BssAI RCCGGY 2 cut(s) 41, 514
BssECI CCNNGG 2 cut(s) 211, 435
BssMI GATC 6 cut(s) 55, 75, 80, 106, 207, 621
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 516, 816
BstDEI CTNAG 3 cut(s) 260, 521, 576
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 184, 657
BstHHI GCGC 2 cut(s) 330, 344
BstKTI GATC 6 cut(s) 58, 78, 83, 109, 210, 624
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 6 cut(s) 55, 75, 80, 106, 207, 621
BstMWI GCNNNNNNNGC 3 cut(s) 194, 256, 341
BstNI CCWGG 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 434
BstSLI GKGCMC 1 cut(s) 455
BstV1I GCAGC 3 cut(s) 184, 237, 368
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 1 cut(s) 246
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 5 cut(s) 30, 41, 224, 434, 453
BtgI CCRYGG 1 cut(s) 211
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 184, 657
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 351, 584
Cac8I GCNNGC 2 cut(s) 516, 816
CfoI GCGC 2 cut(s) 330, 344
Cfr10I RCCGGY 2 cut(s) 41, 514
Cfr13I GGNCC 4 cut(s) 394, 432, 451, 452
CseI GACGC 2 cut(s) 189, 640
Csp6I GTAC 1 cut(s) 497
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 3 cut(s) 260, 521, 576
DpnI GATC 6 cut(s) 57, 77, 82, 108, 209, 623
DpnII GATC 6 cut(s) 55, 75, 80, 106, 207, 621
DraIII CACNNNGTG 1 cut(s) 579
EaeI YGGCCR 2 cut(s) 28, 39
EciI GGCGGA 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 261, 455
Eco47I GGWCC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 434
EcoT38I GRGCYC 2 cut(s) 261, 455
FaiI YATR 9 cut(s) 457, 468, 473, 512, 539, 569, 693, 735, 754
FaqI GGGAC 2 cut(s) 161, 510
FauI CCCGC 1 cut(s) 342
FbaI TGATCA 1 cut(s) 621
Fnu4HI GCNGC 6 cut(s) 198, 222, 251, 357, 605, 686
FokI GGATG 2 cut(s) 191, 664
FriOI GRGCYC 2 cut(s) 261, 455
Fsp4HI GCNGC 6 cut(s) 198, 222, 251, 357, 605, 686
FspBI CTAG 5 cut(s) 144, 318, 591, 596, 642
GlaI GCGC 2 cut(s) 329, 343
GluI GCNGC 6 cut(s) 198, 222, 251, 357, 605, 686
GsaI CCCAGC 2 cut(s) 297, 417
HaeIII GGCC 5 cut(s) 30, 41, 224, 434, 453
HapII CCGG 6 cut(s) 42, 68, 287, 515, 669, 749
HgaI GACGC 2 cut(s) 189, 640
HhaI GCGC 2 cut(s) 330, 344
Hin6I GCGC 2 cut(s) 328, 342
HinP1I GCGC 2 cut(s) 328, 342
HinfI GANTC 1 cut(s) 183
HpaII CCGG 6 cut(s) 42, 68, 287, 515, 669, 749
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 4 cut(s) 10, 75, 80, 268
Hpy8I GTNNAC 1 cut(s) 554
Hpy99I CGWCG 1 cut(s) 552
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 2 cut(s) 550, 556
HpyCH4V TGCA 1 cut(s) 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 256, 341
HpyF3I CTNAG 3 cut(s) 260, 521, 576
HpySE526I ACGT 2 cut(s) 550, 556
HspAI GCGC 2 cut(s) 328, 342
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 6 cut(s) 55, 75, 80, 106, 207, 621
Lsp1109I GCAGC 3 cut(s) 184, 237, 368
LweI GCATC 1 cut(s) 711
MaeI CTAG 5 cut(s) 144, 318, 591, 596, 642
MaeII ACGT 2 cut(s) 550, 556
MaeIII GTNAC 1 cut(s) 755
MalI GATC 6 cut(s) 57, 77, 82, 108, 209, 623
MbiI CCGCTC 1 cut(s) 762
MboI GATC 6 cut(s) 55, 75, 80, 106, 207, 621
MboII GAAGA 1 cut(s) 719
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 261, 455
MluCI AATT 3 cut(s) 308, 489, 656
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 84, 246
MnlI CCTC 6 cut(s) 155, 168, 297, 318, 416, 594
MroNI GCCGGC 1 cut(s) 514
MseI TTAA 1 cut(s) 488
MspI CCGG 6 cut(s) 42, 68, 287, 515, 669, 749
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
MwoI GCNNNNNNNGC 3 cut(s) 194, 256, 341
NaeI GCCGGC 1 cut(s) 516
NdeII GATC 6 cut(s) 55, 75, 80, 106, 207, 621
NgoMIV GCCGGC 1 cut(s) 514
NlaIV GGNNCC 3 cut(s) 77, 396, 453
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 755
PcsI WCGNNNNNNNCGW 1 cut(s) 811
PdiI GCCGGC 1 cut(s) 516
PflFI GACNNNGTC 1 cut(s) 558
PkrI GCNGC 6 cut(s) 199, 223, 252, 358, 606, 687
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 434
PspFI CCCAGC 2 cut(s) 293, 413
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 3 cut(s) 77, 396, 453
PspOMI GGGCCC 1 cut(s) 451
PspPI GGNCC 4 cut(s) 394, 432, 451, 452
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 1 cut(s) 558
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 488
SatI GCNGC 6 cut(s) 198, 222, 251, 357, 605, 686
Sau3AI GATC 6 cut(s) 55, 75, 80, 106, 207, 621
Sau96I GGNCC 4 cut(s) 394, 432, 451, 452
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 2 cut(s) 261, 455
SetI ASST 6 cut(s) 121, 266, 370, 553, 559, 706
SfaNI GCATC 1 cut(s) 711
SinI GGWCC 1 cut(s) 394
Sse9I AATT 3 cut(s) 308, 489, 656
SsiI CCGC 6 cut(s) 221, 322, 349, 604, 685, 760
SspMI CTAG 5 cut(s) 144, 318, 591, 596, 642
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 2 cut(s) 553, 559
TaqI TCGA 1 cut(s) 50
TasI AATT 3 cut(s) 308, 489, 656
TauI GCSGC 3 cut(s) 224, 607, 688
Tru1I TTAA 1 cut(s) 488
Tru9I TTAA 1 cut(s) 488
TscAI CASTG 2 cut(s) 351, 584
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 3 cut(s) 197, 250, 356
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 2 cut(s) 668, 719
TspGWI ACGGA 1 cut(s) 200
TspRI CASTG 2 cut(s) 351, 584
Tth111I GACNNNGTC 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 394
VspI ATTAAT 1 cut(s) 488
XapI RAATTY 1 cut(s) 308
XspI CTAG 5 cut(s) 144, 318, 591, 596, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.