Rorug02G0338400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000267
Physical Location & Seq
Reverse (-)
42041681 .. 42042526
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0338400.1

Sequence Viewer

Length: 612 bp
ATGAGTGGTACGGAGGCATCCAAGGACCAAGATGTTTTGGTTCTAAACATTGGAGTTTTCTCCAACAACAATAGCAATATTCAGCATTCTGAAACAGAAGCTTCAACTGCCTGCAAAGCTGCCACTGCTTTCTTGCTCAATTTCTCGAGGCCACTTCATCCGCATCTAAATATGGACATGATGCTCAGCCCAAAATGGCTCATTAAAATGGCTAGAAAGTGGCAGATGAATGATGTTATGGGGAGGAAAAAAATTTCATACCCGAGAGGAGTTGGTGGTAGAAAGTCATGTGATACTACTGCAGCGAAAGGCAATTTTGTTATTTACACCCTTGACAAGGCGCGTTTTGTGCTTCCCTTATCTTATCTTGGTAGCTACATTTTCCAAGAGCTTTTCATAATGTCTGAAGAAGAGTTCGGAGTATCAAGCAATGAGCCTATCGTATTACCATGTGATTCACTCCTTATGAATTACATTGTGTCACTTGTCCACCTTGGAATGAGCTTAGATTTGGAGAAAGCTATTGTCAAATTTGTGATTAGGAGTAGTTGCTCTGTATCTAGTTTCGGTCGAGAACAAACAAGCCAACACTTACTCCTTTGTGGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.66

Weight (kDa)

8.25

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 66 - 162 1.1e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 343
AciI CCGC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 252, 530
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 337
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 6 cut(s) 101, 119, 375, 391, 504, 521
AluI AGCT 6 cut(s) 101, 119, 375, 391, 504, 521
Ama87I CYCGRG 2 cut(s) 145, 262
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 119, 302
ApoI RAATTY 2 cut(s) 252, 530
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 25
AvaI CYCGRG 2 cut(s) 145, 262
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 2 cut(s) 106, 314
BfaI CTAG 2 cut(s) 213, 561
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 2 cut(s) 120, 303
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 2 cut(s) 121, 304
Bme18I GGWCC 1 cut(s) 25
BmeT110I CYCGRG 2 cut(s) 145, 262
BmgT120I GGNCC 1 cut(s) 25
BmsI GCATC 3 cut(s) 26, 171, 172
Bpu1102I GCTNAGC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 21, 493
BsaXI ACNNNNNCTCC 2 cut(s) 579, 609
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 436
BseDI CCNNGG 2 cut(s) 21, 493
BseGI GGATG 2 cut(s) 17, 157
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 436
BseMII CTCAG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 2 cut(s) 106, 314
Bsh1236I CGCG 1 cut(s) 343
Bsh1285I CGRYCG 1 cut(s) 571
BshFI GGCC 1 cut(s) 151
BsiEI CGRYCG 1 cut(s) 571
BsiHKCI CYCGRG 2 cut(s) 145, 262
BslI CCNNNNNNNGG 1 cut(s) 337
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 2 cut(s) 145, 262
Bsp1720I GCTNAGC 1 cut(s) 185
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 198
BspFNI CGCG 1 cut(s) 343
BspMAI CTGCAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 21, 493
BssT1I CCWWGG 2 cut(s) 21, 493
Bst6I CTCTTC 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 185, 505
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 2 cut(s) 17, 157
BstFNI CGCG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 343
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 107, 116, 125, 349
BstSFI CTRYAG 1 cut(s) 300
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 2 cut(s) 106, 314
BsuRI GGCC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 17, 157
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 178, 288, 450
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 185, 505
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco130I CCWWGG 2 cut(s) 21, 493
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 426
Eco88I CYCGRG 2 cut(s) 145, 262
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoT14I CCWWGG 2 cut(s) 21, 493
ErhI CCWWGG 2 cut(s) 21, 493
FaeI CATG 3 cut(s) 181, 291, 453
FaiI YATR 8 cut(s) 173, 179, 239, 259, 289, 398, 451, 467
FatI CATG 3 cut(s) 177, 287, 449
Fnu4HI GCNGC 2 cut(s) 120, 303
FokI GGATG 2 cut(s) 4, 144
Fsp4HI GCNGC 2 cut(s) 120, 303
FspBI CTAG 2 cut(s) 213, 561
GlaI GCGC 1 cut(s) 342
GluI GCNGC 2 cut(s) 120, 303
HaeIII GGCC 1 cut(s) 151
HhaI GCGC 1 cut(s) 343
Hin1II CATG 3 cut(s) 181, 291, 453
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 3 cut(s) 91, 406, 419
Hpy188III TCNNGA 2 cut(s) 145, 572
Hpy8I GTNNAC 1 cut(s) 490
HpyCH4V TGCA 2 cut(s) 114, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 116, 125, 349
HpyF3I CTNAG 2 cut(s) 185, 505
Hsp92II CATG 3 cut(s) 181, 291, 453
HspAI GCGC 1 cut(s) 341
LpnPI CCDG 1 cut(s) 124
Lsp1109I GCAGC 2 cut(s) 106, 314
LweI GCATC 3 cut(s) 26, 171, 172
MaeI CTAG 2 cut(s) 213, 561
MaeIII GTNAC 2 cut(s) 480, 605
MboII GAAGA 2 cut(s) 419, 422
MluCI AATT 5 cut(s) 139, 252, 313, 469, 530
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 4 cut(s) 7, 141, 237, 260
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 85
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 4 cut(s) 107, 116, 125, 349
NlaIII CATG 3 cut(s) 181, 291, 453
NmuCI GTSAC 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 145
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 2 cut(s) 121, 304
PspPI GGNCC 1 cut(s) 25
PstI CTGCAG 1 cut(s) 304
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 120, 303
Sau96I GGNCC 1 cut(s) 25
SetI ASST 7 cut(s) 103, 121, 377, 393, 495, 506, 523
SfaNI GCATC 3 cut(s) 26, 171, 172
SfcI CTRYAG 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 145
SinI GGWCC 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 5 cut(s) 139, 252, 313, 469, 530
SsiI CCGC 1 cut(s) 161
SspI AATATT 1 cut(s) 79
SspMI CTAG 2 cut(s) 213, 561
StyI CCWWGG 2 cut(s) 21, 493
TaqI TCGA 2 cut(s) 146, 571
TaqII GACCGA 1 cut(s) 557
TasI AATT 5 cut(s) 139, 252, 313, 469, 530
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 2 cut(s) 119, 302
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 5 cut(s) 146, 242, 246, 385, 482
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 335
XapI RAATTY 2 cut(s) 252, 530
XhoI CTCGAG 1 cut(s) 145
XspI CTAG 2 cut(s) 213, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.