Rorug03G0272600

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000267
Physical Location & Seq
Reverse (-)
26896322 .. 26900224
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0272600.1

Sequence Viewer

Length: 2433 bp
ATGGCACCTGCGCCGCTGCCGGCGACCACCCCGCCCATGAAGGCCACTTCGAATGGATCATTTCAAGGTGAAAATCCACTTGATTACGCTCTTCCCTTACTCATCCTCCAAATCATCTTGGTCGTGGTGTTCACCAGGTTTCTTGCATATCTTCTAAAACCTCTCCGGCAACCCCGAGTCATAGCCGAAGTTATAGGCGGATGTCTGCTGGGCCCCTCCGCATTCGGGAGGAGCAAGACCTTTCTACACACTATTTTTCCGCCAAAAGGCATGACGGTGCTAGACACGGTAGCCAACATCGGGCTCTGCTTCTTCCTCTTCCTCGTCGGCCTTGAGCTCGACATCAGCGCCATCCGCCGCACAGGCAAGAAGTCCCTCGGCATCGCCTTCTGCGGGATCACCCTCCCCTTCGTCCTCGGCATCGGCACCTCCGAAGCCCTACGCGCCACTGTCTCCAAAGGCGTGAAACAAGGCCCCTTCCTCGTCTTCAACGGCGTCGCCCTCTCCATCACCGCCTTCCCCGTCCTTGCCCGCATCCTCGCTGAGCTCAAGCTCCTCACCACCGACGTCGGCCGCATCGCCATGTCCGCCGCCGCTGTCAACGACGTCGCCGCCTGGATCCTTCTCGCCCTCGCCATCGCCCTCACCGGTAACAACACCTCCCCACTCGTCTCCGTCTGGGTCCTCCTCTGCGGTGCCGGCTTCGTCGGGTTCGCCGTCGTTGCCATCCGCCCCATACTGGTCATGATGGCGCGAAGGTCCCCGGAGGGTGAACCCGTGAAAGAGCTCTACATCTGCATCACTCTCTCGCTGGTTTTGGCCGCGGGGTTCGTGACAGACACAATTGGGATACACGCGCTGTTCGGCGCGTTCGTGGTAGGGATCATAATGCCGAAGGAGGGTTCGTTCGCAGGTGTGTTGATAGAGAAGATTGAGGACCTGGTTTCGGGGCTTTTGTTGCCGCTTTATTTTGTATCCAGTGGGCTCAAGACTAATTTTTTGACTATAAGCGGGGGGGTGTCGTGGGGTATGCTGGTGCTGGTGATATGTACAGCGTCATTTGGGAAGATCGTCGGGACTGTCACTGTGTCGATGCTGTTCAAGGTGCCTTTCAGGGAGGCCTTGGCACTTGGCTTCCTTATGAATACAAAGGGCTTGGTGGAGCTCATCGTCCTCAATATTGGCAAGGATAGAAAGGTACTGAACGAACAGACTTTTGCCATCTTTATTTTGATGGCGTTGTTCACCACCTTCATCACCACACCACTAGTGATGGCAGTGTACAAACCAGCAAGAAAGGGAGCCCCTTACAAACTACGCACCATTTTCCGCAAAAGCCCGGACACAGAACTTCGAATATTGGCATGCTTCCACACCACCCGCAACATCCCCACCATGATCAACCTCATCGAGTCGTCCCGCGGCACCCGCAAGCGCGGACGACTCACCGTCTACGCCATGCACCTCATGGAGCTCTCTGAGCGGTCCTCTGCGATTTCCATGGTCCACAAAGCCCGCTACAATGGCCTCCCATTTTGGAACAAGAAGAGTGATGGAAATGACCAAATGGTTATTGCTTTCGAGGCCTACGAGCAGCTCAGCAGCGTCAAGATTCGGCCAGCCACCGCCATCTCTTCTTTAAACGACATGCACGAGGACATATGCGCCTGCGCACACCAAAAAACCGCGGCAATGATTTTGTTGCCATTTCACAAGCATCAGAAGCTGGACGGCACCATGGAGTCGGTGGGACACTCATTTCAAGTGGTGAACGAGCGTGTGCTCCGACATGCGCCTTGTTCGGTTGGGATTCTAGTTGATAGAGGACTCGGTGGCACCACGCAGGTCTCAGCTAGCGACGTGTCATATACGGCGGTGATAGCGTTCTTCGGAGGAAGAGATGACCGGGAGGCACTGGCCTATGGTATGAGACTGGCTGAACATCCTGGGATTGCGTTGACTGTTTTTAGATTTGTTGCTCCACAAGGGAAGACATTGAGATTTGGAGCGAAATTAGTTGGGATAACAGCTGACAACAAGAAAATACTGAAAGAAGAAGACAGTAGCCAAGAGAATGAAGAGGACGAGAAGTTCTTGGAGGAGTACAAGAATGTAAGAAGTAGCAGTAAGGAAAAGGAAGAGTCCATGTTTTACGAGGAGAAGGTGGTGGACAGCAAAGGGGAGATCGCGGTGGCGTTAAAGACTCTGAGCAAGCACAACTTGTTTATAGTAGGGAGAATGTCGCCGACTGTCCCGTTGGTAGAGTCGAGTGACTGTGCGGAGCTTGGGCCAATCGGAAGCTTCTTAGCCTCGTCAGACTTCTCTTCCACAGCTTCAGTTGTGGTGATTCAACAGTATGATGCTACGGCGTCGCGACCGCTTGTGGTGGAGGAAGCTGACTATGAGTTGCCAGAGTCGTCGTCTATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

810

Amino Acids

87.79

Weight (kDa)

8.82

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 44 - 424 1.2e-59 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 479 - 619 6.5e-52 Plant cation/H(+) antiporter domain
CHX17_C PF23259 626 - 787 3.8e-18 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 16, 902
AatII GACGTC 2 cut(s) 570, 609
Acc16I TGCGCA 1 cut(s) 1672
Acc36I ACCTGC 3 cut(s) 16, 902, 1834
AccB1I GGYRCC 7 cut(s) 4, 425, 695, 1105, 1424, 1733, 1835
AccBSI CCGCTC 1 cut(s) 1483
AccI GTMKAC 1 cut(s) 1452
AclWI GGATC 5 cut(s) 64, 404, 613, 626, 890
AcoI YGGCCR 3 cut(s) 571, 819, 1616
AcuI CTGAAG 1 cut(s) 2319
AcyI GRCGYC 4 cut(s) 495, 567, 606, 2369
AfaI GTAC 4 cut(s) 1051, 1200, 1283, 2105
AfiI CCNNNNNNNGG 7 cut(s) 225, 266, 300, 393, 739, 899, 946
AflIII ACRYGT 1 cut(s) 1860
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 5 cut(s) 65, 490, 1102, 1763, 2351
AhdI GACNNNNNGTC 1 cut(s) 1448
AhlI ACTAGT 1 cut(s) 1267
AjiI CACGTC 1 cut(s) 1861
AjnI CCWGG 4 cut(s) 134, 614, 939, 1945
AloI GAACNNNNNNTCC 4 cut(s) 890, 922, 2075, 2107
Alw21I GWGCWC 6 cut(s) 339, 549, 789, 1167, 1476, 1785
Alw26I GTCTC 4 cut(s) 457, 676, 1852, 1924
AlwI GGATC 5 cut(s) 64, 404, 613, 626, 890
AlwNI CAGNNNCTG 1 cut(s) 1726
Ama87I CYCGRG 1 cut(s) 174
ApaI GGGCCC 1 cut(s) 215
ApeKI GCWGC 3 cut(s) 16, 1594, 1602
ArsI GACNNNNNNTTYG 2 cut(s) 982, 1014
AsiGI ACCGGT 1 cut(s) 647
AspS9I GGNCC 9 cut(s) 211, 212, 473, 682, 759, 937, 1485, 1504, 2288
AsuC2I CCSGG 3 cut(s) 764, 1340, 1907
AsuII TTCGAA 2 cut(s) 50, 1354
AsuNHI GCTAGC 1 cut(s) 1853
AvaI CYCGRG 1 cut(s) 174
AvaII GGWCC 5 cut(s) 682, 759, 937, 1485, 1504
BaeGI GKGCMC 1 cut(s) 215
BamHI GGATCC 1 cut(s) 618
BanI GGYRCC 7 cut(s) 4, 425, 695, 1105, 1424, 1733, 1835
BanII GRGCYC 9 cut(s) 215, 306, 339, 549, 789, 987, 1167, 1306, 1476
BauI CACGAG 1 cut(s) 1652
BbsI GAAGAC 3 cut(s) 478, 1997, 2064
Bbv12I GWGCWC 6 cut(s) 339, 549, 789, 1167, 1476, 1785
BbvI GCAGC 3 cut(s) 3, 1606, 1614
BceAI ACGGC 5 cut(s) 508, 701, 1747, 1887, 2382
BciT130I CCWGG 4 cut(s) 136, 616, 941, 1947
BciVI GTATCC 2 cut(s) 843, 985
BclI TGATCA 1 cut(s) 1398
BcnI CCSGG 3 cut(s) 764, 1340, 1907
BcoDI GTCTC 4 cut(s) 457, 676, 1852, 1924
BcuI ACTAGT 1 cut(s) 1267
BfaI CTAG 4 cut(s) 281, 1268, 1814, 1854
BfoI RGCGCY 1 cut(s) 351
BfuAI ACCTGC 3 cut(s) 16, 902, 1834
BfuI GTATCC 2 cut(s) 843, 985
BglI GCCNNNNNGGC 1 cut(s) 363
BlpI GCTNAGC 2 cut(s) 543, 1598
Bme1390I CCNGG 7 cut(s) 136, 616, 764, 941, 1340, 1907, 1947
Bme18I GGWCC 5 cut(s) 682, 759, 937, 1485, 1504
BmeRI GACNNNNNGTC 1 cut(s) 1448
BmeT110I CYCGRG 1 cut(s) 174
BmgBI CACGTC 1 cut(s) 1861
BmgT120I GGNCC 9 cut(s) 211, 212, 473, 682, 759, 937, 1485, 1504, 2288
BmrFI CCNGG 7 cut(s) 136, 616, 764, 941, 1340, 1907, 1947
BmsI GCATC 8 cut(s) 390, 429, 543, 585, 807, 1083, 1726, 2350
BmtI GCTAGC 1 cut(s) 1857
BpiI GAAGAC 3 cut(s) 478, 1997, 2064
BplI GAGNNNNNCTC 2 cut(s) 1472, 1504
Bpu1102I GCTNAGC 2 cut(s) 543, 1598
Bpu14I TTCGAA 2 cut(s) 50, 1354
BpuEI CTTGAG 3 cut(s) 353, 533, 971
BpuMI CCSGG 3 cut(s) 764, 1340, 1907
BsaHI GRCGYC 4 cut(s) 495, 567, 606, 2369
BsaI GGTCTC 1 cut(s) 1852
BsaWI WCCGGW 1 cut(s) 647
BsaXI ACNNNNNCTCC 6 cut(s) 90, 120, 644, 674, 890, 920
Bsc4I CCNNNNNNNGG 7 cut(s) 225, 266, 300, 393, 739, 899, 946
Bse118I RCCGGY 3 cut(s) 19, 647, 698
Bse1I ACTGG 4 cut(s) 744, 978, 1920, 1938
Bse3DI GCAATG 1 cut(s) 1698
BseBI CCWGG 4 cut(s) 136, 616, 941, 1947
BseGI GGATG 7 cut(s) 102, 206, 351, 534, 726, 1386, 1942
BseLI CCNNNNNNNGG 7 cut(s) 225, 266, 300, 393, 739, 899, 946
BseMI GCAATG 1 cut(s) 1698
BseMII CTCAG 5 cut(s) 534, 1470, 1612, 1863, 2198
BseNI ACTGG 4 cut(s) 744, 978, 1920, 1938
BseRI GAGGAG 5 cut(s) 244, 545, 677, 2114, 2171
BseSI GKGCMC 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 571
BseXI GCAGC 3 cut(s) 3, 1606, 1614
BseYI CCCAGC 1 cut(s) 208
Bsh1285I CGRYCG 2 cut(s) 574, 2378
BshNI GGYRCC 7 cut(s) 4, 425, 695, 1105, 1424, 1733, 1835
BshTI ACCGGT 1 cut(s) 647
BsiEI CGRYCG 2 cut(s) 574, 2378
BsiHKAI GWGCWC 6 cut(s) 339, 549, 789, 1167, 1476, 1785
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 7 cut(s) 20, 166, 648, 699, 764, 1340, 1906
BslFI GGGAC 6 cut(s) 358, 745, 1090, 1402, 1764, 2237
BslI CCNNNNNNNGG 7 cut(s) 225, 266, 300, 393, 739, 899, 946
BsmAI GTCTC 4 cut(s) 457, 676, 1852, 1924
BsmBI CGTCTC 1 cut(s) 676
BsmFI GGGAC 6 cut(s) 358, 745, 1090, 1402, 1764, 2237
BsmI GAATGC 1 cut(s) 221
Bso31I GGTCTC 1 cut(s) 1852
BsoBI CYCGRG 1 cut(s) 174
Bsp119I TTCGAA 2 cut(s) 50, 1354
Bsp120I GGGCCC 1 cut(s) 211
Bsp1407I TGTACA 2 cut(s) 1049, 1281
Bsp143I GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
Bsp1720I GCTNAGC 2 cut(s) 543, 1598
Bsp19I CCATGG 2 cut(s) 1500, 1737
Bsp68I TCGCGA 1 cut(s) 2374
BspCNI CTCAG 5 cut(s) 535, 1471, 1611, 1862, 2199
BspHI TCATGA 1 cut(s) 744
BspMI ACCTGC 3 cut(s) 16, 902, 1834
BspOI GCTAGC 1 cut(s) 1857
BspPI GGATC 5 cut(s) 64, 404, 613, 626, 890
BspQI GCTCTTC 1 cut(s) 96
BspT104I TTCGAA 2 cut(s) 50, 1354
BspT107I GGYRCC 7 cut(s) 4, 425, 695, 1105, 1424, 1733, 1835
BspTNI GGTCTC 1 cut(s) 1852
BsrBI CCGCTC 1 cut(s) 1483
BsrDI GCAATG 1 cut(s) 1698
BsrFI RCCGGY 3 cut(s) 19, 647, 698
BsrGI TGTACA 2 cut(s) 1049, 1281
BsrI ACTGG 4 cut(s) 744, 978, 1920, 1938
BssAI RCCGGY 3 cut(s) 19, 647, 698
BssMI GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
BssNI GRCGYC 4 cut(s) 495, 567, 606, 2369
BssSI CACGAG 1 cut(s) 1652
BssT1I CCWWGG 3 cut(s) 1122, 1500, 1737
Bst2BI CACGAG 1 cut(s) 1652
Bst2UI CCWGG 4 cut(s) 136, 616, 941, 1947
Bst6I CTCTTC 8 cut(s) 96, 323, 1541, 1639, 1891, 2073, 2133, 2329
BstACI GRCGYC 4 cut(s) 495, 567, 606, 2369
BstAUI TGTACA 2 cut(s) 1049, 1281
BstBI TTCGAA 2 cut(s) 50, 1354
BstDEI CTNAG 6 cut(s) 543, 1479, 1598, 1849, 2207, 2305
BstDSI CCRYGG 5 cut(s) 822, 1420, 1500, 1686, 1737
BstF5I GGATG 7 cut(s) 102, 206, 351, 534, 726, 1386, 1942
BstH2I RGCGCY 1 cut(s) 351
BstKTI GATC 7 cut(s) 59, 399, 621, 885, 1071, 1401, 2187
BstMAI GTCTC 4 cut(s) 457, 676, 1852, 1924
BstMBI GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
BstMCI CGRYCG 2 cut(s) 574, 2378
BstNI CCWGG 4 cut(s) 136, 616, 941, 1947
BstNSI RCATGY 3 cut(s) 1368, 1651, 1793
BstSCI CCNGG 7 cut(s) 134, 614, 762, 939, 1338, 1905, 1945
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 3, 1606, 1614
BstV2I GAAGAC 3 cut(s) 478, 1997, 2064
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BstZI CGGCCG 1 cut(s) 571
BsuI GTATCC 2 cut(s) 843, 985
BtgI CCRYGG 5 cut(s) 822, 1420, 1500, 1686, 1737
BtgZI GCGATG 3 cut(s) 367, 562, 622
BtrI CACGTC 1 cut(s) 1861
BtsCI GGATG 7 cut(s) 102, 206, 351, 534, 726, 1386, 1942
BtsI GCAGTG 1 cut(s) 1284
BtsIMutI CAGTG 5 cut(s) 447, 985, 1083, 1284, 1913
BtuMI TCGCGA 1 cut(s) 2374
BveI ACCTGC 3 cut(s) 16, 902, 1834
CaiI CAGNNNCTG 1 cut(s) 1726
CciI TCATGA 1 cut(s) 744
Cfr10I RCCGGY 3 cut(s) 19, 647, 698
Cfr13I GGNCC 9 cut(s) 211, 212, 473, 682, 759, 937, 1485, 1504, 2288
Cfr42I CCGCGG 3 cut(s) 825, 1423, 1689
CseI GACGC 4 cut(s) 484, 1044, 1594, 2358
CsiI ACCWGGT 2 cut(s) 134, 939
Csp6I GTAC 4 cut(s) 1050, 1199, 1282, 2104
CspAI ACCGGT 1 cut(s) 647
CviQI GTAC 4 cut(s) 1050, 1199, 1282, 2104
DdeI CTNAG 6 cut(s) 543, 1479, 1598, 1849, 2207, 2305
DpnI GATC 7 cut(s) 58, 398, 620, 884, 1070, 1400, 2186
DpnII GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
DraI TTTAAA 1 cut(s) 1641
DriI GACNNNNNGTC 1 cut(s) 1448
EaeI YGGCCR 3 cut(s) 571, 819, 1616
EagI CGGCCG 1 cut(s) 571
Eam1104I CTCTTC 8 cut(s) 96, 323, 1541, 1639, 1891, 2073, 2133, 2329
Eam1105I GACNNNNNGTC 1 cut(s) 1448
EarI CTCTTC 8 cut(s) 96, 323, 1541, 1639, 1891, 2073, 2133, 2329
EciI GGCGGA 5 cut(s) 213, 249, 344, 577, 719
Ecl136II GAGCTC 5 cut(s) 337, 547, 787, 1165, 1474
EclXI CGGCCG 1 cut(s) 571
Eco130I CCWWGG 3 cut(s) 1122, 1500, 1737
Eco147I AGGCCT 2 cut(s) 1121, 1586
Eco24I GRGCYC 9 cut(s) 215, 306, 339, 549, 789, 987, 1167, 1306, 1476
Eco31I GGTCTC 1 cut(s) 1852
Eco47I GGWCC 5 cut(s) 682, 759, 937, 1485, 1504
Eco52I CGGCCG 1 cut(s) 571
Eco53kI GAGCTC 5 cut(s) 337, 547, 787, 1165, 1474
Eco57I CTGAAG 1 cut(s) 2319
Eco88I CYCGRG 1 cut(s) 174
EcoICRI GAGCTC 5 cut(s) 337, 547, 787, 1165, 1474
EcoO109I RGGNCCY 5 cut(s) 212, 473, 682, 759, 937
EcoRII CCWGG 4 cut(s) 134, 614, 939, 1945
EcoT14I CCWWGG 3 cut(s) 1122, 1500, 1737
EcoT38I GRGCYC 9 cut(s) 215, 306, 339, 549, 789, 987, 1167, 1306, 1476
ErhI CCWWGG 3 cut(s) 1122, 1500, 1737
Esp3I CGTCTC 1 cut(s) 676
FalI AAGNNNNNCTT 2 cut(s) 2204, 2236
FaqI GGGAC 6 cut(s) 358, 745, 1090, 1402, 1764, 2237
FauI CCCGC 9 cut(s) 39, 386, 539, 817, 1004, 1388, 1427, 1436, 1523
FauNDI CATATG 1 cut(s) 1661
FbaI TGATCA 1 cut(s) 1398
FblI GTMKAC 1 cut(s) 1452
FokI GGATG 7 cut(s) 89, 213, 338, 521, 713, 1373, 1929
FriOI GRGCYC 9 cut(s) 215, 306, 339, 549, 789, 987, 1167, 1306, 1476
FspBI CTAG 4 cut(s) 281, 1268, 1814, 1854
FspI TGCGCA 1 cut(s) 1672
GsaI CCCAGC 1 cut(s) 212
HaeII RGCGCY 1 cut(s) 351
HapII CCGG 7 cut(s) 20, 166, 648, 699, 764, 1340, 1906
HgaI GACGC 4 cut(s) 484, 1044, 1594, 2358
Hin1I GRCGYC 4 cut(s) 495, 567, 606, 2369
HincII GTYRAC 2 cut(s) 601, 1959
HindII GTYRAC 2 cut(s) 601, 1959
HindIII AAGCTT 1 cut(s) 2299
HpaII CCGG 7 cut(s) 20, 166, 648, 699, 764, 1340, 1906
Hpy188I TCNGA 8 cut(s) 433, 1480, 1722, 1787, 1892, 2208, 2297, 2317
Hpy188III TCNNGA 7 cut(s) 226, 745, 832, 988, 1075, 1609, 2373
HpyCH4IV ACGT 3 cut(s) 567, 606, 1860
HpyCH4V TGCA 4 cut(s) 146, 798, 1462, 1651
HpyF3I CTNAG 6 cut(s) 543, 1479, 1598, 1849, 2207, 2305
HpySE526I ACGT 3 cut(s) 567, 606, 1860
Hsp92I GRCGYC 4 cut(s) 495, 567, 606, 2369
KroI GCCGGC 2 cut(s) 19, 698
KroNI GCCGGC 2 cut(s) 21, 700
Ksp22I TGATCA 1 cut(s) 1398
KspI CCGCGG 3 cut(s) 825, 1423, 1689
Kzo9I GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 9 cut(s) 231, 558, 1162, 1301, 1471, 1788, 1984, 2006, 2281
Lsp1109I GCAGC 3 cut(s) 3, 1606, 1614
LweI GCATC 8 cut(s) 390, 429, 543, 585, 807, 1083, 1726, 2350
MabI ACCWGGT 2 cut(s) 134, 939
MaeI CTAG 4 cut(s) 281, 1268, 1814, 1854
MaeII ACGT 3 cut(s) 567, 606, 1860
MaeIII GTNAC 4 cut(s) 650, 832, 1081, 2270
MalI GATC 7 cut(s) 58, 398, 620, 884, 1070, 1400, 2186
MbiI CCGCTC 1 cut(s) 1483
MboI GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 618
MluCI AATT 3 cut(s) 843, 994, 2012
MlyI GAGTC 9 cut(s) 186, 1421, 1437, 1751, 1821, 2150, 2197, 2273, 2423
MmeI TCCRAC 1 cut(s) 1810
MroNI GCCGGC 2 cut(s) 19, 698
MseI TTAA 3 cut(s) 1640, 2198, 2431
MslI CAYNNNNRTG 2 cut(s) 275, 581
MspA1I CMGCKG 6 cut(s) 16, 596, 824, 1422, 1688, 2030
MspI CCGG 7 cut(s) 20, 166, 648, 699, 764, 1340, 1906
MspR9I CCNGG 7 cut(s) 136, 616, 764, 941, 1340, 1907, 1947
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 4 cut(s) 136, 616, 941, 1947
NaeI GCCGGC 2 cut(s) 21, 700
NciI CCSGG 3 cut(s) 764, 1340, 1907
NcoI CCATGG 2 cut(s) 1500, 1737
NdeI CATATG 1 cut(s) 1661
NdeII GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
NgoMIV GCCGGC 2 cut(s) 19, 698
NheI GCTAGC 1 cut(s) 1853
NmeAIII GCCGAG 2 cut(s) 357, 396
NmuCI GTSAC 3 cut(s) 832, 1081, 2270
NruI TCGCGA 1 cut(s) 2374
NsbI TGCGCA 1 cut(s) 1672
NspI RCATGY 3 cut(s) 1368, 1651, 1793
NspV TTCGAA 2 cut(s) 50, 1354
PaeI GCATGC 1 cut(s) 1368
PagI TCATGA 1 cut(s) 744
PaqCI CACCTGC 2 cut(s) 16, 902
PceI AGGCCT 2 cut(s) 1121, 1586
PciSI GCTCTTC 1 cut(s) 96
PcsI WCGNNNNNNNCGW 5 cut(s) 429, 714, 870, 1587, 1650
PctI GAATGC 1 cut(s) 221
PdiI GCCGGC 2 cut(s) 21, 700
PfeI GAWTC 3 cut(s) 1612, 1810, 2347
PinAI ACCGGT 1 cut(s) 647
PleI GAGTC 9 cut(s) 185, 1420, 1437, 1750, 1821, 2149, 2197, 2272, 2422
PpsI GAGTC 9 cut(s) 185, 1420, 1437, 1750, 1821, 2149, 2197, 2272, 2422
PpuMI RGGWCCY 3 cut(s) 682, 759, 937
Psp124BI GAGCTC 5 cut(s) 339, 549, 789, 1167, 1476
Psp5II RGGWCCY 3 cut(s) 682, 759, 937
Psp6I CCWGG 4 cut(s) 134, 614, 939, 1945
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 4 cut(s) 134, 614, 939, 1945
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 9 cut(s) 211, 212, 473, 682, 759, 937, 1485, 1504, 2288
PspPPI RGGWCCY 3 cut(s) 682, 759, 937
PstNI CAGNNNCTG 1 cut(s) 1726
PsuI RGATCY 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 2030
RruI TCGCGA 1 cut(s) 2374
RsaI GTAC 4 cut(s) 1051, 1200, 1283, 2105
RsaNI GTAC 4 cut(s) 1050, 1199, 1282, 2104
RseI CAYNNNNRTG 2 cut(s) 275, 581
SacI GAGCTC 5 cut(s) 339, 549, 789, 1167, 1476
SacII CCGCGG 3 cut(s) 825, 1423, 1689
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 3 cut(s) 1640, 2198, 2431
Sau3AI GATC 7 cut(s) 56, 396, 618, 882, 1068, 1398, 2184
Sau96I GGNCC 9 cut(s) 211, 212, 473, 682, 759, 937, 1485, 1504, 2288
SchI GAGTC 9 cut(s) 186, 1421, 1437, 1751, 1821, 2150, 2197, 2273, 2423
ScrFI CCNGG 7 cut(s) 136, 616, 764, 941, 1340, 1907, 1947
SexAI ACCWGGT 2 cut(s) 134, 939
SfaNI GCATC 8 cut(s) 390, 429, 543, 585, 807, 1083, 1726, 2350
Sfr303I CCGCGG 3 cut(s) 825, 1423, 1689
SfuI TTCGAA 2 cut(s) 50, 1354
SgrBI CCGCGG 3 cut(s) 825, 1423, 1689
SinI GGWCC 5 cut(s) 682, 759, 937, 1485, 1504
SmiMI CAYNNNNRTG 2 cut(s) 275, 581
SmlI CTYRAG 3 cut(s) 332, 548, 986
SmoI CTYRAG 3 cut(s) 332, 548, 986
SpeI ACTAGT 1 cut(s) 1267
SphI GCATGC 1 cut(s) 1368
Sse9I AATT 3 cut(s) 843, 994, 2012
SseBI AGGCCT 2 cut(s) 1121, 1586
SspI AATATT 2 cut(s) 1180, 1359
SspMI CTAG 4 cut(s) 281, 1268, 1814, 1854
SstI GAGCTC 5 cut(s) 339, 549, 789, 1167, 1476
StuI AGGCCT 2 cut(s) 1121, 1586
StyD4I CCNGG 7 cut(s) 134, 614, 762, 939, 1338, 1905, 1945
StyI CCWWGG 3 cut(s) 1122, 1500, 1737
TaiI ACGT 3 cut(s) 570, 609, 1863
TaqI TCGA 7 cut(s) 50, 339, 1091, 1354, 1410, 1581, 2267
TasI AATT 3 cut(s) 843, 994, 2012
TatI WGTACW 3 cut(s) 1049, 1281, 2103
TfiI GAWTC 3 cut(s) 1612, 1810, 2347
Tru1I TTAA 3 cut(s) 1640, 2198, 2431
Tru9I TTAA 3 cut(s) 1640, 2198, 2431
TscAI CASTG 5 cut(s) 454, 985, 1090, 1284, 1920
TseFI GTSAC 3 cut(s) 832, 1081, 2270
TseI GCWGC 3 cut(s) 16, 1594, 1602
Tsp45I GTSAC 3 cut(s) 832, 1081, 2270
TspDTI ATGAA 4 cut(s) 53, 1157, 1243, 2091
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 5 cut(s) 454, 985, 1090, 1284, 1920
VpaK11BI GGWCC 5 cut(s) 682, 759, 937, 1485, 1504
XceI RCATGY 3 cut(s) 1368, 1651, 1793
XcmI CCANNNNNNNNNTGG 2 cut(s) 1465, 1744
XmiI GTMKAC 1 cut(s) 1452
XspI CTAG 4 cut(s) 281, 1268, 1814, 1854
ZraI GACGTC 2 cut(s) 568, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.