Rmu_sc0040921.1_g000004

E3 ubiquitin-protein ligase At4g11680-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040921.1
OG0000267
Physical Location & Seq
Reverse (-)
25600 .. 27980
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040921.1_g000004.1.cds

Sequence Viewer

Length: 654 bp
atggctgtgaatgtgaggaccatatcttctagacctcttccttctgcattcttgatcagaatggctatgaggatatctagagcaaggtggttcaccttcttgagaagagttttccactaccaaaatgggtcaagttctgatcttggatcgaacctttataattctagcacttgggttatgctggagttcatagctctggcggtcgtgaggcggagacggtggcagttcgggggtggccgtgctgggtttgggtcgggctttggtggtcgattgtggtcttctcacttctttggcagaatggttgttgctcggatttggttgcgctttttgcgagcaataagtccctaccgtattcgtgtagggctagtcgggctagctgcctgtgtgtgcactcaaagtgccttgtctgctctaggtaggcagcaagttccttgcttcgtcaaatggtcgctgtctcctagtggcagggtgagactatgtgtcgtcggatttatcctctggcggcaacatagtaggaaagctgtgcgtatgaaagtcagaaaacaagagctgcgacgtcgttcagcatttaactgggtctctttaccaaactccggtccagtacttgaccatatcgacgtttctccaaatctcggctctctctgggagaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

217

Amino Acids

24.79

Weight (kDa)

12.0

Isoelectric Point (pI)

70.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AatII GACGTC 1 cut(s) 559
AciI CCGC 3 cut(s) 200, 211, 502
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 235
AcyI GRCGYC 1 cut(s) 556
AfaI GTAC 1 cut(s) 603
AfiI CCNNNNNNNGG 2 cut(s) 593, 632
AhdI GACNNNNNGTC 1 cut(s) 479
AluBI AGCT 4 cut(s) 194, 377, 521, 550
AluI AGCT 4 cut(s) 194, 377, 521, 550
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 4 cut(s) 208, 459, 466, 583
Alw44I GTGCAC 1 cut(s) 388
AlwI GGATC 1 cut(s) 154
AoxI GGCC 1 cut(s) 235
ApaLI GTGCAC 1 cut(s) 388
ApeKI GCWGC 3 cut(s) 377, 421, 550
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 18, 596
AsuHPI GGTGA 2 cut(s) 85, 481
AsuNHI GCTAGC 1 cut(s) 373
AvaII GGWCC 2 cut(s) 18, 596
BaeGI GKGCMC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 392
BbvI GCAGC 3 cut(s) 364, 433, 537
BceAI ACGGC 1 cut(s) 222
BclI TGATCA 1 cut(s) 54
BcoDI GTCTC 4 cut(s) 208, 459, 466, 583
BfaI CTAG 7 cut(s) 30, 78, 165, 365, 374, 413, 459
BisI GCNGC 4 cut(s) 378, 422, 503, 551
BlsI GCNGC 4 cut(s) 379, 423, 504, 552
BmcAI AGTACT 1 cut(s) 603
Bme18I GGWCC 2 cut(s) 18, 596
BmeRI GACNNNNNGTC 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 18, 596
BmrI ACTGGG 1 cut(s) 583
BmtI GCTAGC 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 556
BsaI GGTCTC 1 cut(s) 583
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 632
Bse1I ACTGG 2 cut(s) 578, 599
BseLI CCNNNNNNNGG 2 cut(s) 593, 632
BseNI ACTGG 2 cut(s) 578, 599
BseSI GKGCMC 1 cut(s) 392
BseXI GCAGC 3 cut(s) 364, 433, 537
BseYI CCCAGC 1 cut(s) 242
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 392
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 593, 632
BsmAI GTCTC 4 cut(s) 208, 459, 466, 583
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 47
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 54, 139, 146
BspACI CCGC 3 cut(s) 200, 211, 502
BspANI GGCC 1 cut(s) 237
BspOI GCTAGC 1 cut(s) 377
BspPI GGATC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 583
BsrI ACTGG 2 cut(s) 578, 599
BssMI GATC 3 cut(s) 54, 139, 146
BssNI GRCGYC 1 cut(s) 556
Bst4CI ACNGT 2 cut(s) 219, 350
Bst6I CTCTTC 2 cut(s) 42, 100
BstACI GRCGYC 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 333, 375
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 3 cut(s) 57, 142, 149
BstMAI GTCTC 4 cut(s) 208, 459, 466, 583
BstMBI GATC 3 cut(s) 54, 139, 146
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 328, 370, 407
BstSLI GKGCMC 1 cut(s) 392
BstV1I GCAGC 3 cut(s) 364, 433, 537
BstV2I GAAGAC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 237
Cac8I GCNNGC 2 cut(s) 333, 375
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 18, 596
Csp6I GTAC 1 cut(s) 602
CviQI GTAC 1 cut(s) 602
DpnI GATC 3 cut(s) 56, 141, 148
DpnII GATC 3 cut(s) 54, 139, 146
DriI GACNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 2 cut(s) 42, 100
Eam1105I GACNNNNNGTC 1 cut(s) 479
EarI CTCTTC 2 cut(s) 42, 100
EciI GGCGGA 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 583
Eco32I GATATC 1 cut(s) 75
Eco47I GGWCC 2 cut(s) 18, 596
EcoRV GATATC 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 208
FaiI YATR 9 cut(s) 23, 68, 159, 179, 191, 478, 510, 530, 612
FaqI GGGAC 1 cut(s) 327
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 4 cut(s) 378, 422, 503, 551
Fsp4HI GCNGC 4 cut(s) 378, 422, 503, 551
FspBI CTAG 7 cut(s) 30, 78, 165, 365, 374, 413, 459
GlaI GCGC 1 cut(s) 323
GluI GCNGC 4 cut(s) 378, 422, 503, 551
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 594
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 556
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HpaII CCGG 1 cut(s) 594
HphI GGTGA 2 cut(s) 85, 481
Hpy166II GTNNAC 2 cut(s) 93, 390
Hpy188I TCNGA 5 cut(s) 59, 139, 312, 488, 539
Hpy188III TCNNGA 5 cut(s) 30, 52, 78, 100, 205
Hpy8I GTNNAC 2 cut(s) 93, 390
Hpy99I CGWCG 4 cut(s) 488, 558, 561, 620
HpyAV CCTTC 2 cut(s) 51, 106
HpyCH4III ACNGT 2 cut(s) 219, 350
HpyCH4IV ACGT 2 cut(s) 556, 618
HpyCH4V TGCA 2 cut(s) 47, 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 370, 407
HpySE526I ACGT 2 cut(s) 556, 618
Hsp92I GRCGYC 1 cut(s) 556
HspAI GCGC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 3 cut(s) 54, 139, 146
Lsp1109I GCAGC 3 cut(s) 364, 433, 537
MaeI CTAG 7 cut(s) 30, 78, 165, 365, 374, 413, 459
MaeII ACGT 2 cut(s) 556, 618
MalI GATC 3 cut(s) 56, 141, 148
MboI GATC 3 cut(s) 54, 139, 146
MboII GAAGA 4 cut(s) 18, 29, 117, 270
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 466
MnlI CCTC 5 cut(s) 9, 45, 63, 201, 506
MseI TTAA 1 cut(s) 570
MspI CCGG 1 cut(s) 594
Mva1269I GAATGC 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 328, 370, 407
NdeII GATC 3 cut(s) 54, 139, 146
NheI GCTAGC 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 612
PctI GAATGC 1 cut(s) 47
PkrI GCNGC 4 cut(s) 379, 423, 504, 552
PsiI TTATAA 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 242
PspPI GGNCC 2 cut(s) 18, 596
RsaI GTAC 1 cut(s) 603
RsaNI GTAC 1 cut(s) 602
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 4 cut(s) 378, 422, 503, 551
Sau3AI GATC 3 cut(s) 54, 139, 146
Sau96I GGNCC 2 cut(s) 18, 596
ScaI AGTACT 1 cut(s) 603
SduI GDGCHC 1 cut(s) 392
SinI GGWCC 2 cut(s) 18, 596
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 160
SsiI CCGC 3 cut(s) 200, 211, 502
SspMI CTAG 7 cut(s) 30, 78, 165, 365, 374, 413, 459
TaaI ACNGT 2 cut(s) 219, 350
TaiI ACGT 2 cut(s) 559, 621
TaqI TCGA 3 cut(s) 149, 268, 615
TasI AATT 1 cut(s) 160
TatI WGTACW 1 cut(s) 601
TauI GCSGC 1 cut(s) 505
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseI GCWGC 3 cut(s) 377, 421, 550
TspDTI ATGAA 2 cut(s) 178, 545
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 2 cut(s) 18, 596
XbaI TCTAGA 2 cut(s) 29, 77
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XspI CTAG 7 cut(s) 30, 78, 165, 365, 374, 413, 459
ZraI GACGTC 1 cut(s) 557
ZrmI AGTACT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.