FvH4_6g29890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000267
Physical Location & Seq
Reverse (-)
23111446 .. 23112325
880 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29890.t1

Sequence Viewer

Length: 402 bp
ATGCCGTCGAACGGGCCCGAGAGGACCTGGTGTCTAGTTGGTCCGAGTTGGCCTGGCGATATCAAGGATCACCTGGAGGTGACGATTGTTTTAGAACTAAGCGGTTTTAGGCCGCAAATAATACCCCTTCACTTTGAGGTAGGGTGCAAAGGGCCTTGTGCCAGTCTATGCACCTTGTGTGCCTTATCTGCTCTAGGTAGGTGGCGTGTCCTTTGCTTAGTCAAATGGTTACAACCTCCTAGTGGTAGGATGAAACTAAGTGTCGTCGGATTCAATCTTCGGCGGCAACATAGTAGGAAAGTTTCATTCTTAGACATTAGGATATGTAATCGTGTTACGAATCTATTGATCTTTCCATTATGTCACCTTGTGACAAAACAAATGGAGTCGCCATTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

9.24

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 102, 113, 283
AclWI GGATC 1 cut(s) 75
AdeI CACNNNGTG 2 cut(s) 177, 370
AfiI CCNNNNNNNGG 2 cut(s) 11, 242
AgsI TTSAA 1 cut(s) 274
AhdI GACNNNNNGTC 1 cut(s) 30
AjnI CCWGG 3 cut(s) 26, 52, 72
AlwI GGATC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 4 cut(s) 14, 50, 110, 152
ApaI GGGCCC 1 cut(s) 18
AspS9I GGNCC 5 cut(s) 14, 15, 24, 41, 152
AsuHPI GGTGA 3 cut(s) 62, 91, 356
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 2 cut(s) 24, 41
BaeGI GKGCMC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 18
BciT130I CCWGG 3 cut(s) 28, 54, 74
BfaI CTAG 3 cut(s) 35, 194, 240
BisI GCNGC 2 cut(s) 113, 284
BlsI GCNGC 2 cut(s) 114, 285
Bme1390I CCNGG 3 cut(s) 28, 54, 74
Bme18I GGWCC 2 cut(s) 24, 41
BmeRI GACNNNNNGTC 1 cut(s) 30
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 5 cut(s) 14, 15, 24, 41, 152
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 3 cut(s) 28, 54, 74
BpmI CTGGAG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 242
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 3 cut(s) 28, 54, 74
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 11, 242
BseNI ACTGG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 18
BshFI GGCC 4 cut(s) 16, 52, 112, 154
BsiHKCI CYCGRG 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 11, 242
BsnI GGCC 4 cut(s) 16, 52, 112, 154
BsoBI CYCGRG 1 cut(s) 17
Bsp120I GGGCCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 2 cut(s) 67, 348
BspACI CCGC 3 cut(s) 102, 113, 283
BspANI GGCC 4 cut(s) 16, 52, 112, 154
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 162
BssMI GATC 2 cut(s) 67, 348
Bst2UI CCWGG 3 cut(s) 28, 54, 74
BstDEI CTNAG 4 cut(s) 98, 217, 257, 310
BstF5I GGATG 1 cut(s) 255
BstKTI GATC 2 cut(s) 70, 351
BstMBI GATC 2 cut(s) 67, 348
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 3 cut(s) 28, 54, 74
BstSCI CCNGG 3 cut(s) 26, 52, 72
BstSLI GKGCMC 1 cut(s) 18
BsuRI GGCC 4 cut(s) 16, 52, 112, 154
BtsCI GGATG 1 cut(s) 255
Cfr13I GGNCC 5 cut(s) 14, 15, 24, 41, 152
CsiI ACCWGGT 1 cut(s) 26
CviJI RGCY 4 cut(s) 16, 52, 112, 154
CviKI_1 RGCY 4 cut(s) 16, 52, 112, 154
DdeI CTNAG 4 cut(s) 98, 217, 257, 310
DpnI GATC 2 cut(s) 69, 350
DpnII GATC 2 cut(s) 67, 348
DraIII CACNNNGTG 2 cut(s) 177, 370
DriI GACNNNNNGTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 24, 41
Eco88I CYCGRG 1 cut(s) 17
EcoO109I RGGNCCY 2 cut(s) 24, 152
EcoRII CCWGG 3 cut(s) 26, 52, 72
EcoRV GATATC 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 4 cut(s) 169, 291, 325, 361
Fnu4HI GCNGC 2 cut(s) 113, 284
FokI GGATG 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 2 cut(s) 113, 284
FspBI CTAG 3 cut(s) 35, 194, 240
GluI GCNGC 2 cut(s) 113, 284
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 4 cut(s) 16, 52, 112, 154
HinfI GANTC 3 cut(s) 270, 340, 386
HphI GGTGA 3 cut(s) 62, 91, 356
Hpy188I TCNGA 2 cut(s) 45, 269
Hpy99I CGWCG 2 cut(s) 10, 269
HpyAV CCTTC 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 147, 171
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 4 cut(s) 98, 217, 257, 310
Kzo9I GATC 2 cut(s) 67, 348
LpnPI CCDG 7 cut(s) 13, 39, 40, 59, 66, 86, 175
MabI ACCWGGT 1 cut(s) 26
MaeI CTAG 3 cut(s) 35, 194, 240
MaeIII GTNAC 5 cut(s) 79, 228, 334, 362, 370
MalI GATC 2 cut(s) 69, 350
MboI GATC 2 cut(s) 67, 348
MboII GAAGA 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 18
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 15, 70, 130, 246
MspR9I CCNGG 3 cut(s) 28, 54, 74
MvaI CCWGG 3 cut(s) 28, 54, 74
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 2 cut(s) 67, 348
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 3 cut(s) 79, 362, 370
PfeI GAWTC 2 cut(s) 270, 340
PkrI GCNGC 2 cut(s) 114, 285
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PpuMI RGGWCCY 1 cut(s) 24
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 26, 52, 72
PspGI CCWGG 3 cut(s) 26, 52, 72
PspN4I GGNNCC 1 cut(s) 16
PspOMI GGGCCC 1 cut(s) 14
PspPI GGNCC 5 cut(s) 14, 15, 24, 41, 152
PspPPI RGGWCCY 1 cut(s) 24
SatI GCNGC 2 cut(s) 113, 284
Sau3AI GATC 2 cut(s) 67, 348
Sau96I GGNCC 5 cut(s) 14, 15, 24, 41, 152
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 28, 54, 74
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 29, 75, 81, 141, 176, 199, 203, 238, 369
SexAI ACCWGGT 1 cut(s) 26
SinI GGWCC 2 cut(s) 24, 41
SsiI CCGC 3 cut(s) 102, 113, 283
SspMI CTAG 3 cut(s) 35, 194, 240
StyD4I CCNGG 3 cut(s) 26, 52, 72
TaqI TCGA 1 cut(s) 8
TauI GCSGC 2 cut(s) 115, 286
TfiI GAWTC 2 cut(s) 270, 340
TseFI GTSAC 3 cut(s) 79, 362, 370
Tsp45I GTSAC 3 cut(s) 79, 362, 370
TspDTI ATGAA 2 cut(s) 266, 294
VpaK11BI GGWCC 2 cut(s) 24, 41
XspI CTAG 3 cut(s) 35, 194, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.