RchiOBHm_Chr1g0351211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Reverse (-)
44465107 .. 44466238
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57700

Sequence Viewer

Length: 672 bp
ATGAGGAAGGGCTGGTGGGTCGACCTGCGTTCGCATGCTGCAAGGGAGGTGCTGGCGGAGGCACTGCCGGTGATGAAACGACGAAGGAGTTGCAGACGGGGTGGTGGGGAGATGCTTGCAGATCGGTGGCGAGATGCTTGCAGGCAGCTGTTCTCTTCGATTGGGCTAAGTGGGGTTTGGGCTATGGGCCCAATTTCCCTTTATTTTATGTTTTATTGTCTTTGGTTTTTGTTAGTTAATTGTGGCTTTATGCCGGTAATAAGTCCTTACCGAGTAGTGGTAGGGCGACGTGGGCTTGGTCCCGGACTGCACACCTTGTGTGCCTTGTCTGCTCTGGCTAGGCGGCGAGTTCCTTGCTTTGTCAAATGGTCGCAGCCTCCCAGTGGCAGGATGAAACTTAGTGTCACCGAAATTGTTTTTCGGTGGCAACATAGTGGGAAAGCTGATAGAAATAGTAAATTATGGCTCCGCGTGAGCAAAATCTTTCTGGTATGTCACCACCTTTGTAAAGCGAATAGAGTAGCTAATGATGCACTCTTCGCTAATTGGTGCTCGTTAGAATACATATTTTCTGTAGAGACTCTCGTTATGATTTCGGGCTGTTCTCTTTATGCTTATTGTAATCTGGGGTTTAAGTATCATGTCCCCCCATGTATTTTGAGGTTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.64

Weight (kDa)

10.07

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 471
AciI CCGC 3 cut(s) 56, 343, 469
AdeI CACNNNGTG 1 cut(s) 318
AfiI CCNNNNNNNGG 3 cut(s) 277, 383, 387
AjiI CACGTC 1 cut(s) 290
AluBI AGCT 3 cut(s) 148, 443, 524
AluI AGCT 3 cut(s) 148, 443, 524
Alw21I GWGCWC 1 cut(s) 554
Alw26I GTCTC 1 cut(s) 572
AoxI GGCC 1 cut(s) 187
ApaI GGGCCC 1 cut(s) 191
ApeKI GCWGC 3 cut(s) 38, 145, 373
AspS9I GGNCC 3 cut(s) 187, 188, 299
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 82, 397, 488
AvaII GGWCC 1 cut(s) 299
BaeGI GKGCMC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 554
BbvI GCAGC 3 cut(s) 25, 157, 385
BcgI CGANNNNNNTGC 6 cut(s) 72, 106, 120, 154, 336, 370
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 4 cut(s) 39, 146, 344, 374
BlsI GCNGC 4 cut(s) 40, 147, 345, 375
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 1 cut(s) 299
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 187, 188, 299
BmiI GGNNCC 3 cut(s) 189, 301, 467
BmrFI CCNGG 1 cut(s) 303
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 102, 124, 520
BmuI ACTGGG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 383, 387
Bse118I RCCGGY 2 cut(s) 67, 253
Bse1I ACTGG 1 cut(s) 381
BseGI GGATG 1 cut(s) 396
BseLI CCNNNNNNNGG 3 cut(s) 277, 383, 387
BseNI ACTGG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 3 cut(s) 25, 157, 385
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 554
BsiSI CCGG 3 cut(s) 68, 254, 303
BslFI GGGAC 2 cut(s) 285, 629
BslI CCNNNNNNNGG 3 cut(s) 277, 383, 387
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 2 cut(s) 285, 629
BsnI GGCC 1 cut(s) 189
Bsp120I GGGCCC 1 cut(s) 187
Bsp1286I GDGCHC 2 cut(s) 191, 554
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 3 cut(s) 56, 343, 469
BspANI GGCC 1 cut(s) 189
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 189, 301, 467
BspMI ACCTGC 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 67, 253
BsrI ACTGG 1 cut(s) 381
BssAI RCCGGY 2 cut(s) 67, 253
BssMI GATC 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 160, 542
BstC8I GCNNGC 5 cut(s) 36, 54, 117, 139, 143
BstDEI CTNAG 2 cut(s) 167, 398
BstF5I GGATG 1 cut(s) 396
BstFNI CGCG 1 cut(s) 471
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 292, 329, 530, 539
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 3 cut(s) 25, 157, 385
BsuRI GGCC 1 cut(s) 189
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 396
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 62, 388
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 5 cut(s) 36, 54, 117, 139, 143
Cfr10I RCCGGY 2 cut(s) 67, 253
Cfr13I GGNCC 3 cut(s) 187, 188, 299
CviAII CATG 3 cut(s) 35, 641, 651
DdeI CTNAG 2 cut(s) 167, 398
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraIII CACNNNGTG 1 cut(s) 318
Eam1104I CTCTTC 2 cut(s) 160, 542
EarI CTCTTC 2 cut(s) 160, 542
EciI GGCGGA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 3 cut(s) 38, 644, 654
FaqI GGGAC 2 cut(s) 285, 629
FatI CATG 3 cut(s) 34, 640, 650
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 4 cut(s) 39, 146, 344, 374
FokI GGATG 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 4 cut(s) 39, 146, 344, 374
FspBI CTAG 1 cut(s) 339
GluI GCNGC 4 cut(s) 39, 146, 344, 374
HaeIII GGCC 1 cut(s) 189
HapII CCGG 3 cut(s) 68, 254, 303
Hin1II CATG 3 cut(s) 38, 644, 654
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 580
HpaII CCGG 3 cut(s) 68, 254, 303
HphI GGTGA 3 cut(s) 82, 397, 488
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 2 cut(s) 84, 291
HpyAV CCTTC 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 6 cut(s) 41, 93, 119, 141, 310, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 292, 329, 530, 539
HpyF3I CTNAG 2 cut(s) 167, 398
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 3 cut(s) 38, 644, 654
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 471
Lsp1109I GCAGC 3 cut(s) 25, 157, 385
LweI GCATC 3 cut(s) 102, 124, 520
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 403, 494
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 147, 529
MhlI GDGCHC 2 cut(s) 191, 554
MluCI AATT 5 cut(s) 192, 238, 411, 458, 544
MlyI GAGTC 1 cut(s) 574
MnlI CCTC 4 cut(s) 40, 52, 387, 654
MseI TTAA 3 cut(s) 237, 633, 670
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 3 cut(s) 68, 254, 303
MspR9I CCNGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 471
MwoI GCNNNNNNNGC 4 cut(s) 292, 329, 530, 539
NciI CCSGG 1 cut(s) 303
NdeII GATC 1 cut(s) 121
NlaIII CATG 3 cut(s) 38, 644, 654
NlaIV GGNNCC 3 cut(s) 189, 301, 467
NmuCI GTSAC 2 cut(s) 403, 494
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 4 cut(s) 40, 147, 345, 375
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
PspN4I GGNNCC 3 cut(s) 189, 301, 467
PspOMI GGGCCC 1 cut(s) 187
PspPI GGNCC 3 cut(s) 187, 188, 299
PvuII CAGCTG 1 cut(s) 148
SalI GTCGAC 1 cut(s) 20
SaqAI TTAA 3 cut(s) 237, 633, 670
SatI GCNGC 4 cut(s) 39, 146, 344, 374
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 3 cut(s) 187, 188, 299
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 2 cut(s) 191, 554
SetI ASST 9 cut(s) 27, 51, 150, 292, 317, 445, 504, 526, 665
SfaNI GCATC 3 cut(s) 102, 124, 520
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 1 cut(s) 299
SphI GCATGC 1 cut(s) 38
Sse9I AATT 5 cut(s) 192, 238, 411, 458, 544
SsiI CCGC 3 cut(s) 56, 343, 469
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 301
TaiI ACGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 21, 158
TasI AATT 5 cut(s) 192, 238, 411, 458, 544
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 237, 633, 670
Tru9I TTAA 3 cut(s) 237, 633, 670
TscAI CASTG 2 cut(s) 69, 388
TseFI GTSAC 2 cut(s) 403, 494
TseI GCWGC 3 cut(s) 38, 145, 373
Tsp45I GTSAC 2 cut(s) 403, 494
TspDTI ATGAA 3 cut(s) 89, 407, 656
TspRI CASTG 2 cut(s) 69, 388
VpaK11BI GGWCC 1 cut(s) 299
XceI RCATGY 1 cut(s) 38
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.