RchiOBHm_Chr2g0160901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000267
Physical Location & Seq
Forward (+)
76801504 .. 76802970
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52930

Sequence Viewer

Length: 291 bp
ATGAAACTAAGTGTCATCGGATTATATTTTCGGTGGCAGCATACTAGGAAAGCTGATAGTATTGGTTACTCATGGCAACGAGTGAGGATTATCTTTCCGGTTTGTCACCACAATTGTAAAGCGAATGGAGTAACCCGTAGAACACTATTCGCTAAAGGGTGCATGTTAGAATGCATATTCATAGATGAGACACCTGTTATAATTTCATGTGGGTCTCTTGAGGCTTATTGTAATTTGGGGTTAAGGCACTATGCTCCCCCGGGTGTATTCTATGGTTTCAGTAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.95

Weight (kDa)

9.12

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 182, 219
Ama87I CYCGRG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 37
AsuC2I CCSGG 2 cut(s) 260, 261
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 259
BbvI GCAGC 1 cut(s) 49
BcnI CCSGG 2 cut(s) 260, 261
BcoDI GTCTC 2 cut(s) 182, 219
BfaI CTAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 260, 261
BmeT110I CYCGRG 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 260, 261
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 2 cut(s) 260, 261
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 258, 259
BsaWI WCCGGW 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 258, 259
BseXI GCAGC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 2 cut(s) 98, 260
BsmAI GTCTC 2 cut(s) 182, 219
BsmI GAATGC 1 cut(s) 176
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 259
BspTNI GGTCTC 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 258, 259
BstDEI CTNAG 1 cut(s) 8
BstMAI GTCTC 2 cut(s) 182, 219
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 258, 259
BstV1I GCAGC 1 cut(s) 49
Cfr9I CCCGGG 1 cut(s) 259
CviAII CATG 3 cut(s) 72, 163, 207
CviJI RGCY 2 cut(s) 53, 224
CviKI_1 RGCY 2 cut(s) 53, 224
DdeI CTNAG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 176
FaeI CATG 3 cut(s) 75, 166, 210
FatI CATG 3 cut(s) 71, 162, 206
Fnu4HI GCNGC 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 45
GluI GCNGC 1 cut(s) 38
HapII CCGG 2 cut(s) 98, 260
Hin1II CATG 3 cut(s) 75, 166, 210
HpaII CCGG 2 cut(s) 98, 260
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 162, 174
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 3 cut(s) 75, 166, 210
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 111, 207, 273
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 65, 104, 130
MfeI CAATTG 1 cut(s) 112
MluCI AATT 3 cut(s) 112, 201, 232
MnlI CCTC 2 cut(s) 78, 214
Mph1103I ATGCAT 1 cut(s) 176
MseI TTAA 2 cut(s) 242, 289
MspI CCGG 2 cut(s) 98, 260
MspR9I CCNGG 2 cut(s) 260, 261
MunI CAATTG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 176
NciI CCSGG 2 cut(s) 260, 261
NlaIII CATG 3 cut(s) 75, 166, 210
NmuCI GTSAC 1 cut(s) 104
NsiI ATGCAT 1 cut(s) 176
NspI RCATGY 1 cut(s) 166
PctI GAATGC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 39
PsiI TTATAA 1 cut(s) 200
SaqAI TTAA 2 cut(s) 242, 289
SatI GCNGC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 260, 261
SetI ASST 2 cut(s) 55, 196
SmaI CCCGGG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 3 cut(s) 112, 201, 232
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 258, 259
TasI AATT 3 cut(s) 112, 201, 232
Tru1I TTAA 2 cut(s) 242, 289
Tru9I TTAA 2 cut(s) 242, 289
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 17, 169, 195
TspMI CCCGGG 1 cut(s) 259
XceI RCATGY 1 cut(s) 166
XmaI CCCGGG 1 cut(s) 259
XspI CTAG 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.