RchiOBHm_Chr2g0151251

Mitochondrial PGP phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000267
Physical Location & Seq
Reverse (-)
68894615 .. 68897005
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52046

Sequence Viewer

Length: 792 bp
ATGGCGGCCGGAATCCATGAGAGCTGCCGGTACGGCGACCACTGCAGCCCTCGACACCGGCCTGGGCTAAGGTTAAAGTGGGCCTGGGCTTTTGCTTTAGGCCCAATATATTTTAGTTTTTATTTATGTTGTTTTCTTTTAATTGGATATGGCTTTATGCCACCAATAAGTCCCCACTACTTTTTAGTAGGAAGAAATGGGCGTTGTCTCGATATGCACACTCTATGTGCCTTGTCTAGCCTAGCGAGGCGACGAACTGTTTGTTTGATCAAATGGACACAACCTCCTAGTGGCAGGATGAAATTGAGTGTCGCCGGAGTTATTTCTGTGCGGCAACATAGTGGGAAAACTATGCTATTTGTAATGATGTTTCTTCGTTATAGAGTTATCTTTCCGGTATGTCACGGCTATGTCAAAGCAAATGGAGTAGCCTTTCGTGCACTCTTTGCTAATTGGTGCTTGTTAGAATACATAGATCTTGTGGAGAATCCTGGATTGAAGAAACCGGCTGGGACAGCAGAAGAGATCGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTGCAGAGGAGCCATTCATTGTTAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCACAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00564 ko01100 map00564 map01100
Pfam Domains
Protein Families
PGP_phosphatase

Protein Analysis

263

Amino Acids

29.68

Weight (kDa)

9.66

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGP_phosphatase PF09419 166 - 213 4.8e-09 Mitochondrial PGP phosphatase
Hydrolase_like PF13242 169 - 211 2.3e-06 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 664
AasI GACNNNNNNGTC 1 cut(s) 642
Acc36I ACCTGC 1 cut(s) 664
AciI CCGC 2 cut(s) 5, 331
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 499
AjnI CCWGG 3 cut(s) 61, 83, 490
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw21I GWGCWC 1 cut(s) 442
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 438
AoxI GGCC 4 cut(s) 6, 59, 81, 100
ApaLI GTGCAC 1 cut(s) 438
ApeKI GCWGC 2 cut(s) 24, 45
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AspS9I GGNCC 3 cut(s) 81, 101, 635
AsuHPI GGTGA 2 cut(s) 584, 688
AvaII GGWCC 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 442
BbvI GCAGC 2 cut(s) 11, 57
BccI CCATC 1 cut(s) 749
BceAI ACGGC 2 cut(s) 49, 421
BciT130I CCWGG 3 cut(s) 63, 85, 492
BclI TGATCA 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 5 cut(s) 237, 242, 288, 686, 714
BfmI CTRYAG 1 cut(s) 43
BfuAI ACCTGC 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 475
BisI GCNGC 4 cut(s) 6, 25, 46, 332
BlsI GCNGC 4 cut(s) 7, 26, 47, 333
Bme1390I CCNGG 3 cut(s) 63, 85, 492
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 3 cut(s) 81, 101, 635
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 3 cut(s) 63, 85, 492
BmsI GCATC 1 cut(s) 565
Bpu10I CCTNAGC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 62, 84
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse118I RCCGGY 3 cut(s) 27, 57, 505
Bse1I ACTGG 1 cut(s) 637
BseBI CCWGG 3 cut(s) 63, 85, 492
BseDI CCNNGG 2 cut(s) 62, 84
BseGI GGATG 2 cut(s) 303, 775
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 637
BseRI GAGGAG 1 cut(s) 668
BseSI GKGCMC 1 cut(s) 442
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 11, 57
BseYI CCCAGC 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 4 cut(s) 8, 61, 83, 102
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 442
BsiSI CCGG 6 cut(s) 9, 28, 58, 315, 395, 506
BslFI GGGAC 2 cut(s) 156, 526
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 156, 526
BsnI GGCC 4 cut(s) 8, 61, 83, 102
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 267, 475, 525, 574
BspACI CCGC 2 cut(s) 5, 331
BspANI GGCC 4 cut(s) 8, 61, 83, 102
BspLI GGNNCC 1 cut(s) 657
BspMAI CTGCAG 1 cut(s) 47
BspMI ACCTGC 1 cut(s) 664
BsrFI RCCGGY 3 cut(s) 27, 57, 505
BsrI ACTGG 1 cut(s) 637
BssAI RCCGGY 3 cut(s) 27, 57, 505
BssECI CCNNGG 2 cut(s) 62, 84
BssMI GATC 4 cut(s) 267, 475, 525, 574
Bst2UI CCWGG 3 cut(s) 63, 85, 492
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 303, 775
BstKTI GATC 4 cut(s) 270, 478, 528, 577
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 4 cut(s) 267, 475, 525, 574
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 5 cut(s) 33, 42, 437, 446, 515
BstNI CCWGG 3 cut(s) 63, 85, 492
BstNSI RCATGY 1 cut(s) 763
BstSCI CCNGG 3 cut(s) 61, 83, 490
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 442
BstV1I GCAGC 2 cut(s) 11, 57
BstX2I RGATCY 1 cut(s) 475
BstYI RGATCY 1 cut(s) 475
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 4 cut(s) 8, 61, 83, 102
BtsCI GGATG 2 cut(s) 303, 775
BtsI GCAGTG 2 cut(s) 40, 770
BtsIMutI CAGTG 2 cut(s) 40, 770
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 761
Cfr10I RCCGGY 3 cut(s) 27, 57, 505
Cfr13I GGNCC 3 cut(s) 81, 101, 635
Csp6I GTAC 1 cut(s) 31
CviAII CATG 3 cut(s) 17, 733, 760
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 1 cut(s) 68
DpnI GATC 4 cut(s) 269, 477, 527, 576
DpnII GATC 4 cut(s) 267, 475, 525, 574
DrdI GACNNNNNNGTC 1 cut(s) 642
DseDI GACNNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
EclXI CGGCCG 1 cut(s) 6
Eco47I GGWCC 1 cut(s) 635
Eco52I CGGCCG 1 cut(s) 6
EcoRII CCWGG 3 cut(s) 61, 83, 490
FaeI CATG 3 cut(s) 20, 736, 763
FaqI GGGAC 2 cut(s) 156, 526
FatI CATG 3 cut(s) 16, 732, 759
FbaI TGATCA 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 6, 25, 46, 332
FokI GGATG 2 cut(s) 310, 762
Fsp4HI GCNGC 4 cut(s) 6, 25, 46, 332
FspBI CTAG 5 cut(s) 237, 242, 288, 686, 714
GluI GCNGC 4 cut(s) 6, 25, 46, 332
GsaI CCCAGC 1 cut(s) 513
HaeIII GGCC 4 cut(s) 8, 61, 83, 102
HapII CCGG 6 cut(s) 9, 28, 58, 315, 395, 506
Hin1II CATG 3 cut(s) 20, 736, 763
HinfI GANTC 5 cut(s) 12, 487, 604, 643, 736
HpaII CCGG 6 cut(s) 9, 28, 58, 315, 395, 506
HphI GGTGA 2 cut(s) 584, 688
Hpy166II GTNNAC 1 cut(s) 440
Hpy188III TCNNGA 2 cut(s) 209, 529
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 2 cut(s) 255, 556
HpyAV CCTTC 1 cut(s) 712
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 5 cut(s) 45, 217, 440, 650, 763
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 42, 437, 446, 515
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 3 cut(s) 20, 736, 763
Ksp22I TGATCA 1 cut(s) 267
Kzo9I GATC 4 cut(s) 267, 475, 525, 574
LmnI GCTCC 1 cut(s) 655
Lsp1109I GCAGC 2 cut(s) 11, 57
LweI GCATC 1 cut(s) 565
MaeI CTAG 5 cut(s) 237, 242, 288, 686, 714
MaeIII GTNAC 2 cut(s) 401, 737
MalI GATC 4 cut(s) 269, 477, 527, 576
MboI GATC 4 cut(s) 267, 475, 525, 574
MboII GAAGA 4 cut(s) 204, 365, 511, 533
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 3 cut(s) 141, 302, 451
MlyI GAGTC 2 cut(s) 652, 745
MnlI CCTC 5 cut(s) 60, 240, 294, 646, 672
MseI TTAA 4 cut(s) 74, 140, 629, 725
MslI CAYNNNNRTG 1 cut(s) 408
MspI CCGG 6 cut(s) 9, 28, 58, 315, 395, 506
MspR9I CCNGG 3 cut(s) 63, 85, 492
MvaI CCWGG 3 cut(s) 63, 85, 492
MwoI GCNNNNNNNGC 5 cut(s) 33, 42, 437, 446, 515
NdeII GATC 4 cut(s) 267, 475, 525, 574
NlaIII CATG 3 cut(s) 20, 736, 763
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 2 cut(s) 401, 737
NspI RCATGY 1 cut(s) 763
PaeI GCATGC 1 cut(s) 763
PaqCI CACCTGC 1 cut(s) 664
PfeI GAWTC 3 cut(s) 12, 487, 604
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 4 cut(s) 7, 26, 47, 333
PleI GAGTC 2 cut(s) 651, 744
PpsI GAGTC 2 cut(s) 651, 744
Psp6I CCWGG 3 cut(s) 61, 83, 490
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 3 cut(s) 61, 83, 490
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 3 cut(s) 81, 101, 635
PstI CTGCAG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 4 cut(s) 74, 140, 629, 725
SatI GCNGC 4 cut(s) 6, 25, 46, 332
Sau3AI GATC 4 cut(s) 267, 475, 525, 574
Sau96I GGNCC 3 cut(s) 81, 101, 635
SchI GAGTC 2 cut(s) 652, 745
ScrFI CCNGG 3 cut(s) 63, 85, 492
SduI GDGCHC 1 cut(s) 442
SetI ASST 7 cut(s) 26, 74, 286, 640, 678, 746, 787
SfaNI GCATC 1 cut(s) 565
SfcI CTRYAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 408
SphI GCATGC 1 cut(s) 763
Sse9I AATT 3 cut(s) 141, 302, 451
SsiI CCGC 2 cut(s) 5, 331
SspMI CTAG 5 cut(s) 237, 242, 288, 686, 714
StyD4I CCNGG 3 cut(s) 61, 83, 490
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 4 cut(s) 52, 210, 528, 577
TasI AATT 3 cut(s) 141, 302, 451
TauI GCSGC 2 cut(s) 8, 334
TfiI GAWTC 3 cut(s) 12, 487, 604
Tru1I TTAA 4 cut(s) 74, 140, 629, 725
Tru9I TTAA 4 cut(s) 74, 140, 629, 725
TscAI CASTG 2 cut(s) 47, 770
TseFI GTSAC 2 cut(s) 401, 737
TseI GCWGC 2 cut(s) 24, 45
Tsp45I GTSAC 2 cut(s) 401, 737
TspDTI ATGAA 2 cut(s) 314, 652
TspRI CASTG 2 cut(s) 47, 770
VneI GTGCAC 1 cut(s) 438
VpaK11BI GGWCC 1 cut(s) 635
XceI RCATGY 1 cut(s) 763
XspI CTAG 5 cut(s) 237, 242, 288, 686, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.