Rroxscaffold_1G00026660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000267
Physical Location & Seq
Forward (+)
33605259 .. 33609543
4285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026660.1

Sequence Viewer

Length: 477 bp
ATGAACATTGTATATAAGTATATAGGCAAGATAGCTCATGCACAATCAAAATGTAGAGTCAGAAATCAAAATCGCATTCCTAATCCTGAAAGCCTTCTGTGTTGCCTTAATCGATCACAAGGGACAAACAAATCTACACACTACAACATACCTGATTGGATGAAGTGGGAAAATGTTCACTTCCCAAACCTAAACTCCAAACATGGAAAAAGCGGGCAACGTGGCATTGGTCCTGGTATGCACACTCTATGTGCCTTGTACGGCCTAGCGAGGCGGCGAGCTATTTGCTTGATCAAATGGACGCAACCTCCTAGTGGTAGGATGAAATTGAGTGTCGCCGAATTTATTTCCGTGCGGCAACATAGTGGAAAAGCTGTGTTATTTGTAATTATGCTTCTTCGTGATAGAGATATCTTTACGGACGCAAGAAGCTTCAAAGGTGGTGGAATGGATGAGGATCACGGCAAGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.91

Weight (kDa)

10.03

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 213, 274, 355
AclWI GGATC 1 cut(s) 465
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 314
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 4 cut(s) 35, 281, 374, 432
AluI AGCT 4 cut(s) 35, 281, 374, 432
AlwI GGATC 1 cut(s) 465
AoxI GGCC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 2 cut(s) 93, 174
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BceAI ACGGC 1 cut(s) 277
BcgI CGANNNNNNTGC 2 cut(s) 267, 301
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 291
BfaI CTAG 2 cut(s) 266, 312
BisI GCNGC 2 cut(s) 275, 356
BlsI GCNGC 2 cut(s) 276, 357
Bme1390I CCNGG 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 460
Bsa29I ATCGAT 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 456
BsaXI ACNNNNNCTCC 4 cut(s) 179, 209, 292, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 112
BseGI GGATG 4 cut(s) 165, 327, 457, 475
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 314
BshFI GGCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 112
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 113, 291, 457
BspACI CCGC 3 cut(s) 213, 274, 355
BspANI GGCC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 112
BspPI GGATC 1 cut(s) 465
BssMI GATC 3 cut(s) 113, 291, 457
Bst2UI CCWGG 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 215, 279
BstF5I GGATG 4 cut(s) 165, 327, 457, 475
BstKTI GATC 3 cut(s) 116, 294, 460
BstMBI GATC 3 cut(s) 113, 291, 457
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 112
BsuRI GGCC 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 112
BtsCI GGATG 4 cut(s) 165, 327, 457, 475
Cac8I GCNNGC 2 cut(s) 215, 279
Cfr13I GGNCC 1 cut(s) 230
ClaI ATCGAT 1 cut(s) 112
CseI GACGC 2 cut(s) 310, 431
Csp6I GTAC 1 cut(s) 259
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 2 cut(s) 38, 203
CviJI RGCY 6 cut(s) 35, 93, 264, 281, 374, 432
CviKI_1 RGCY 6 cut(s) 35, 93, 264, 281, 374, 432
CviQI GTAC 1 cut(s) 259
DpnI GATC 3 cut(s) 115, 293, 459
DpnII GATC 3 cut(s) 113, 291, 457
Eco32I GATATC 1 cut(s) 412
Eco47I GGWCC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 232
EcoRV GATATC 1 cut(s) 412
FaeI CATG 2 cut(s) 41, 206
FaqI GGGAC 1 cut(s) 136
FatI CATG 2 cut(s) 37, 202
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 275, 356
FokI GGATG 3 cut(s) 172, 334, 464
Fsp4HI GCNGC 2 cut(s) 275, 356
FspBI CTAG 2 cut(s) 266, 312
GluI GCNGC 2 cut(s) 275, 356
HaeIII GGCC 1 cut(s) 264
HgaI GACGC 2 cut(s) 310, 431
Hin1II CATG 2 cut(s) 41, 206
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 86, 401
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 41, 241
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 2 cut(s) 41, 206
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 113, 291, 457
LpnPI CCDG 4 cut(s) 99, 165, 219, 246
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 266, 312
MaeII ACGT 1 cut(s) 220
MalI GATC 3 cut(s) 115, 293, 459
MboI GATC 3 cut(s) 113, 291, 457
MboII GAAGA 1 cut(s) 389
MluCI AATT 3 cut(s) 326, 341, 387
MlyI GAGTC 1 cut(s) 66
MnlI CCTC 3 cut(s) 264, 318, 448
MroXI GAANNNNTTC 2 cut(s) 93, 174
MseI TTAA 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 234
NdeII GATC 3 cut(s) 113, 291, 457
NlaIII CATG 2 cut(s) 41, 206
PctI GAATGC 1 cut(s) 75
PdmI GAANNNNTTC 2 cut(s) 93, 174
PkrI GCNGC 2 cut(s) 276, 357
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 275, 356
Sau3AI GATC 3 cut(s) 113, 291, 457
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 234
SetI ASST 9 cut(s) 37, 154, 192, 223, 283, 310, 376, 434, 442
SfaNI GCATC 1 cut(s) 460
SinI GGWCC 1 cut(s) 230
Sse9I AATT 3 cut(s) 326, 341, 387
SsiI CCGC 3 cut(s) 213, 274, 355
SspMI CTAG 2 cut(s) 266, 312
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 223
TaqI TCGA 1 cut(s) 112
TasI AATT 3 cut(s) 326, 341, 387
TauI GCSGC 2 cut(s) 277, 358
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspDTI ATGAA 3 cut(s) 17, 176, 338
TspGWI ACGGA 2 cut(s) 340, 434
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 2 cut(s) 93, 174
XspI CTAG 2 cut(s) 266, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.