RchiOBHm_Chr5g0050261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000267
Physical Location & Seq
Forward (+)
50259724 .. 50260419
696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32786

Sequence Viewer

Length: 696 bp
ATGATGATCGCGTTTCTGCAAGGCTTGGCTCCGATCTGGATTGACAGGGGCCCTAGACGCGTCGGAGATGCCGGACCGTCACCGGCGTTCTGGCGAAGGCAGCCGGGCGACACTGGGCAGGTCCTGATTGGGGTCACTGCGGTGGAGATGGGCCAGGCCCGGCTGGCAGGTGGTGGGCCTCCCTCTCCTCAGATTGTTGCTTGGGTTTGGGCTTCCTTGGGCCCGGCCTGGGCTAACTATGATATTTTTCTTTGTCAGTTTATTTCTACTTGTTTACTGTTTATAATAAGTCACTGCCATAGGTTGGTAGGACGAGATGGGCTTCGTGCCGGTTTATGCACCTGGTGTGCCTTGTCTGCTCTAGGTAAGCGGCGAGTTCCTTGCTTGGTCAAATGGTCGCTGCCTCCTAGTGGTAGGGTGAAACTAAGTGTCACTGGATGTATTTTCCAGTGGCAACATGGTGGGAAAGCTGTGAGAATGGATATTATGCTATGCTATATTCGAGTTGCAGATCGAGTTATCTTTCCGTTGTGTCACCGCTGGGAAGCAAATAGAACCGTCTGGAGCGCATTCTTTGCTAGTTGGTGTGTATTTGAATACAATCGTTTAGTAGATATTCATGATATTATTTCAGGATGTACTCTAGGTGCCTATTGTAATAAGGGGTTTAGGCTTAATGTCCCCCCCTTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.74

Weight (kDa)

9.44

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AarI CACCTGC 1 cut(s) 158
Acc36I ACCTGC 2 cut(s) 109, 158
AccB1I GGYRCC 1 cut(s) 647
AccB7I CCANNNNNTGG 1 cut(s) 304
AccII CGCG 2 cut(s) 11, 60
AciI CCGC 3 cut(s) 140, 370, 538
AdeI CACNNNGTG 1 cut(s) 345
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 4 cut(s) 130, 229, 304, 410
AflIII ACRYGT 1 cut(s) 58
AgsI TTSAA 1 cut(s) 596
AjnI CCWGG 3 cut(s) 153, 227, 341
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 6 cut(s) 49, 151, 156, 176, 220, 225
ApaI GGGCCC 2 cut(s) 53, 224
ApeKI GCWGC 2 cut(s) 100, 400
AspLEI GCGC 1 cut(s) 569
AspS9I GGNCC 9 cut(s) 49, 50, 74, 121, 151, 157, 176, 220, 221
AsuC2I CCSGG 3 cut(s) 105, 160, 224
AsuHPI GGTGA 3 cut(s) 72, 430, 527
AvaII GGWCC 2 cut(s) 74, 121
BaeGI GKGCMC 2 cut(s) 53, 224
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 2 cut(s) 53, 224
BbvI GCAGC 2 cut(s) 112, 387
BccI CCATC 2 cut(s) 142, 311
BcgI CGANNNNNNTGC 2 cut(s) 363, 397
BciT130I CCWGG 3 cut(s) 155, 229, 343
BcnI CCSGG 3 cut(s) 105, 160, 224
BfaI CTAG 5 cut(s) 54, 362, 408, 579, 644
BfuAI ACCTGC 2 cut(s) 109, 158
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 3 cut(s) 101, 371, 401
BlsI GCNGC 3 cut(s) 102, 372, 402
Bme1390I CCNGG 6 cut(s) 105, 155, 160, 224, 229, 343
Bme18I GGWCC 2 cut(s) 74, 121
BmgT120I GGNCC 9 cut(s) 49, 50, 74, 121, 151, 157, 176, 220, 221
BmiI GGNNCC 5 cut(s) 30, 50, 51, 222, 649
BmrFI CCNGG 6 cut(s) 105, 155, 160, 224, 229, 343
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 583
BpuMI CCSGG 3 cut(s) 105, 160, 224
BsaJI CCNNGG 2 cut(s) 216, 228
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 229, 304, 410
Bse118I RCCGGY 2 cut(s) 82, 329
Bse1I ACTGG 3 cut(s) 118, 439, 448
BseBI CCWGG 3 cut(s) 155, 229, 343
BseDI CCNNGG 2 cut(s) 216, 228
BseGI GGATG 2 cut(s) 443, 641
BseLI CCNNNNNNNGG 4 cut(s) 130, 229, 304, 410
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 3 cut(s) 118, 439, 448
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 53, 224
BseXI GCAGC 2 cut(s) 112, 387
BseYI CCCAGC 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 11, 60
BshFI GGCC 6 cut(s) 51, 153, 158, 178, 222, 227
BshNI GGYRCC 1 cut(s) 647
BsiSI CCGG 6 cut(s) 72, 83, 104, 160, 224, 330
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 4 cut(s) 130, 229, 304, 410
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 569
BsnI GGCC 6 cut(s) 51, 153, 158, 178, 222, 227
Bsp120I GGGCCC 2 cut(s) 49, 220
Bsp1286I GDGCHC 2 cut(s) 53, 224
Bsp143I GATC 3 cut(s) 6, 33, 511
BspACI CCGC 3 cut(s) 140, 370, 538
BspANI GGCC 6 cut(s) 51, 153, 158, 178, 222, 227
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 2 cut(s) 11, 60
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 5 cut(s) 30, 50, 51, 222, 649
BspMI ACCTGC 2 cut(s) 109, 158
BspT107I GGYRCC 1 cut(s) 647
BsrFI RCCGGY 2 cut(s) 82, 329
BsrI ACTGG 3 cut(s) 118, 439, 448
BssAI RCCGGY 2 cut(s) 82, 329
BssECI CCNNGG 2 cut(s) 216, 228
BssMI GATC 3 cut(s) 6, 33, 511
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 155, 229, 343
Bst4CI ACNGT 3 cut(s) 78, 279, 559
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 189, 425
BstF5I GGATG 2 cut(s) 443, 641
BstFNI CGCG 2 cut(s) 11, 60
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 3 cut(s) 9, 36, 514
BstMBI GATC 3 cut(s) 6, 33, 511
BstMWI GCNNNNNNNGC 5 cut(s) 57, 100, 164, 356, 575
BstNI CCWGG 3 cut(s) 155, 229, 343
BstSCI CCNGG 6 cut(s) 103, 153, 158, 222, 227, 341
BstSLI GKGCMC 2 cut(s) 53, 224
BstUI CGCG 2 cut(s) 11, 60
BstV1I GCAGC 2 cut(s) 112, 387
BsuRI GGCC 6 cut(s) 51, 153, 158, 178, 222, 227
BtsCI GGATG 2 cut(s) 443, 641
BtsI GCAGTG 2 cut(s) 135, 292
BtsIMutI CAGTG 5 cut(s) 111, 135, 292, 432, 455
BveI ACCTGC 2 cut(s) 109, 158
Cac8I GCNNGC 1 cut(s) 165
CaiI CAGNNNCTG 1 cut(s) 124
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 569
Cfr10I RCCGGY 2 cut(s) 82, 329
Cfr13I GGNCC 9 cut(s) 49, 50, 74, 121, 151, 157, 176, 220, 221
CpoI CGGWCCG 1 cut(s) 74
CseI GACGC 2 cut(s) 49, 66
CsiI ACCWGGT 1 cut(s) 341
Csp6I GTAC 1 cut(s) 639
CspI CGGWCCG 1 cut(s) 74
CviAII CATG 2 cut(s) 458, 620
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 2 cut(s) 189, 425
DpnI GATC 3 cut(s) 8, 35, 513
DpnII GATC 3 cut(s) 6, 33, 511
DraIII CACNNNGTG 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 2 cut(s) 53, 224
Eco47I GGWCC 2 cut(s) 74, 121
EcoO109I RGGNCCY 3 cut(s) 49, 50, 121
EcoRII CCWGG 3 cut(s) 153, 227, 341
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 2 cut(s) 53, 224
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 461, 623
FaiI YATR 9 cut(s) 240, 284, 300, 337, 459, 488, 493, 498, 621
FaqI GGGAC 1 cut(s) 665
FatI CATG 2 cut(s) 457, 619
Fnu4HI GCNGC 3 cut(s) 101, 371, 401
FokI GGATG 2 cut(s) 450, 648
FriOI GRGCYC 2 cut(s) 53, 224
Fsp4HI GCNGC 3 cut(s) 101, 371, 401
FspBI CTAG 5 cut(s) 54, 362, 408, 579, 644
GlaI GCGC 1 cut(s) 568
GluI GCNGC 3 cut(s) 101, 371, 401
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 583
HaeIII GGCC 6 cut(s) 51, 153, 158, 178, 222, 227
HapII CCGG 6 cut(s) 72, 83, 104, 160, 224, 330
HgaI GACGC 2 cut(s) 49, 66
HhaI GCGC 1 cut(s) 569
Hin1II CATG 2 cut(s) 461, 623
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HpaII CCGG 6 cut(s) 72, 83, 104, 160, 224, 330
HphI GGTGA 3 cut(s) 72, 430, 527
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 3 cut(s) 33, 65, 192
Hpy188III TCNNGA 5 cut(s) 37, 124, 562, 620, 633
Hpy8I GTNNAC 1 cut(s) 275
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 78, 279, 559
HpyCH4V TGCA 3 cut(s) 19, 339, 509
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 100, 164, 356, 575
HpyF3I CTNAG 2 cut(s) 189, 425
Hsp92II CATG 2 cut(s) 461, 623
HspAI GCGC 1 cut(s) 567
Kzo9I GATC 3 cut(s) 6, 33, 511
LmnI GCTCC 2 cut(s) 34, 564
Lsp1109I GCAGC 2 cut(s) 112, 387
LweI GCATC 1 cut(s) 58
MabI ACCWGGT 1 cut(s) 341
MaeI CTAG 5 cut(s) 54, 362, 408, 579, 644
MaeIII GTNAC 5 cut(s) 78, 133, 290, 430, 533
MalI GATC 3 cut(s) 8, 35, 513
MboI GATC 3 cut(s) 6, 33, 511
MhlI GDGCHC 2 cut(s) 53, 224
MluI ACGCGT 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 189, 193, 198, 414
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 6 cut(s) 72, 83, 104, 160, 224, 330
MspR9I CCNGG 6 cut(s) 105, 155, 160, 224, 229, 343
Mva1269I GAATGC 1 cut(s) 569
MvaI CCWGG 3 cut(s) 155, 229, 343
MvnI CGCG 2 cut(s) 11, 60
MwoI GCNNNNNNNGC 5 cut(s) 57, 100, 164, 356, 575
NciI CCSGG 3 cut(s) 105, 160, 224
NdeII GATC 3 cut(s) 6, 33, 511
NlaIII CATG 2 cut(s) 461, 623
NlaIV GGNNCC 5 cut(s) 30, 50, 51, 222, 649
NmuCI GTSAC 5 cut(s) 78, 133, 290, 430, 533
OliI CACNNNNGTG 1 cut(s) 140
PagI TCATGA 1 cut(s) 619
PaqCI CACCTGC 1 cut(s) 158
PctI GAATGC 1 cut(s) 569
PflMI CCANNNNNTGG 1 cut(s) 304
PkrI GCNGC 3 cut(s) 102, 372, 402
PpuMI RGGWCCY 1 cut(s) 121
PsiI TTATAA 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 3 cut(s) 153, 227, 341
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 3 cut(s) 153, 227, 341
PspN4I GGNNCC 5 cut(s) 30, 50, 51, 222, 649
PspOMI GGGCCC 2 cut(s) 49, 220
PspPI GGNCC 9 cut(s) 49, 50, 74, 121, 151, 157, 176, 220, 221
PspPPI RGGWCCY 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
RseI CAYNNNNRTG 1 cut(s) 140
Rsr2I CGGWCCG 1 cut(s) 74
RsrII CGGWCCG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 3 cut(s) 101, 371, 401
Sau3AI GATC 3 cut(s) 6, 33, 511
Sau96I GGNCC 9 cut(s) 49, 50, 74, 121, 151, 157, 176, 220, 221
ScrFI CCNGG 6 cut(s) 105, 155, 160, 224, 229, 343
SduI GDGCHC 2 cut(s) 53, 224
SetI ASST 7 cut(s) 123, 172, 305, 344, 367, 472, 649
SexAI ACCWGGT 1 cut(s) 341
SfaNI GCATC 1 cut(s) 58
SgrAI CRCCGGYG 1 cut(s) 82
SinI GGWCC 2 cut(s) 74, 121
SmiMI CAYNNNNRTG 1 cut(s) 140
SsiI CCGC 3 cut(s) 140, 370, 538
SspMI CTAG 5 cut(s) 54, 362, 408, 579, 644
StyD4I CCNGG 6 cut(s) 103, 153, 158, 222, 227, 341
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 78, 279, 559
TaqI TCGA 2 cut(s) 502, 514
TatI WGTACW 1 cut(s) 638
TauI GCSGC 1 cut(s) 373
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 5 cut(s) 118, 142, 299, 439, 455
TseFI GTSAC 5 cut(s) 78, 133, 290, 430, 533
TseI GCWGC 2 cut(s) 100, 400
Tsp45I GTSAC 5 cut(s) 78, 133, 290, 430, 533
TspDTI ATGAA 1 cut(s) 608
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 5 cut(s) 118, 142, 299, 439, 455
Van91I CCANNNNNTGG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 74, 121
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 5 cut(s) 54, 362, 408, 579, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.