RchiOBHm_Chr1g0341281

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000267
Physical Location & Seq
Reverse (-)
32960248 .. 32961407
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56798

Sequence Viewer

Length: 264 bp
ATGCAACGTTGGGCTTGGGCTATGGGCTGCATTCGCATTGATATTCGGACTGGATGGTGGGCTGCCCAATCCTTTAGTGGTGCTTGGGCTTGGACTGTTGTTTTGGGCCTAGGTTACCTTATTCTTTACTTTTGTTGTTTTTTACTTTTACTAGGTTGTGGCTTAACGTCGGTAATAAGCATATACCATTTAGTCGTAGGGCGCAATGGGCTTGGTCCCAGTCTATGCACCTTGTGTGCCTTGTTTGCTCTAGGTAGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.66

Weight (kDa)

9.18

Isoelectric Point (pI)

25.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 259
AclI AACGTT 1 cut(s) 7
AdeI CACNNNGTG 1 cut(s) 234
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 27, 62
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
AspA2I CCTAGG 1 cut(s) 109
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 106, 215
AvaII GGWCC 1 cut(s) 215
AvrII CCTAGG 1 cut(s) 109
BbvI GCAGC 2 cut(s) 14, 49
BccI CCATC 1 cut(s) 48
BfaI CTAG 3 cut(s) 110, 152, 251
BisI GCNGC 2 cut(s) 28, 63
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 2 cut(s) 29, 64
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 2 cut(s) 106, 215
BmiI GGNNCC 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 213
BmuI ACTGGG 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 109
Bse1I ACTGG 2 cut(s) 55, 219
Bse3DI GCAATG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 55, 219
BseXI GCAGC 2 cut(s) 14, 49
BshFI GGCC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 201
BsmFI GGGAC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 30
BsnI GGCC 1 cut(s) 108
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 211
BsrI ACTGG 2 cut(s) 55, 219
BssECI CCNNGG 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 97
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 204
BstMWI GCNNNNNNNGC 3 cut(s) 33, 208, 245
BstPI GGTNACC 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 14, 49
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 59
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 106, 215
CviJI RGCY 8 cut(s) 14, 20, 27, 62, 89, 108, 162, 211
CviKI_1 RGCY 8 cut(s) 14, 20, 27, 62, 89, 108, 162, 211
DraIII CACNNNGTG 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaiI YATR 4 cut(s) 23, 182, 184, 226
FaqI GGGAC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 28, 63
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 2 cut(s) 28, 63
FspBI CTAG 3 cut(s) 110, 152, 251
GlaI GCGC 1 cut(s) 203
GluI GCNGC 2 cut(s) 28, 63
HaeIII GGCC 1 cut(s) 108
HhaI GCGC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 48
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 2 cut(s) 7, 167
HpyCH4V TGCA 3 cut(s) 4, 30, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 208, 245
HpySE526I ACGT 2 cut(s) 7, 167
HspAI GCGC 1 cut(s) 202
LpnPI CCDG 2 cut(s) 36, 232
Lsp1109I GCAGC 2 cut(s) 14, 49
MaeI CTAG 3 cut(s) 110, 152, 251
MaeII ACGT 2 cut(s) 7, 167
MaeIII GTNAC 1 cut(s) 113
MseI TTAA 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 33, 208, 245
NlaIV GGNNCC 1 cut(s) 217
PctI GAATGC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 29, 64
Psp1406I AACGTT 1 cut(s) 7
PspEI GGTNACC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 106, 215
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 28, 63
Sau96I GGNCC 2 cut(s) 106, 215
SetI ASST 7 cut(s) 10, 115, 120, 157, 170, 233, 256
SinI GGWCC 1 cut(s) 215
SsiI CCGC 1 cut(s) 259
SspMI CTAG 3 cut(s) 110, 152, 251
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 2 cut(s) 10, 170
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 2 cut(s) 27, 62
VpaK11BI GGWCC 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 74
XmaJI CCTAGG 1 cut(s) 109
XspI CTAG 3 cut(s) 110, 152, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.