Rorug03G0105700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000267
Physical Location & Seq
Forward (+)
8421160 .. 8422954
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0105700.1

Sequence Viewer

Length: 1392 bp
ATGATGCTCTACTACCTGTTCATTTCCCTAACTCTTTTCGTCGCTCATGGCCACTCCAAGCCAGAGATTCATATTGGCTACAACCTCACTTTGGCAGTGCCTGTTGAGTACACCATGGGATTCATTGGCAGAGCTTTTCTAATGGATACCAATCTAACCATACCCAGTTTCAAAGCTGCATTGAGTGTTGAAGCTTTTAATGGGAAGTACTCATGCTCCTTTCAAGTCTTTCTTGGAAATGTGAAGGTATGGAATTCTGGCCATTACTCAAAGTTTTATACATCGAATGTATGCGTCCTTGAACTCACCAGTGATGGAGATTTAAGGCTGAAGGGTCCAAAAGACAGAGTGGGATGGAGAACCGGGACTTCTGGACAAGGTGTGGAGAGGTTACAGTTATTGAGGACAGGGAATCTAGTACTAGTTGATGGCTTGGACCGGATCAAATGGCAGAGTTTTAATTTTCCAACCGATGTGATGCTTTGGGGTCAGACACTTAGTGTGGCGTCACGCTTGACTTCATTTCCAAGCAATTCAAGTTCATACTACTCGATGGAAATTGAGCACACCAGGATTGCTCTCTACTTGAATTCCGGTAAGCAAAACTATTCGTATTGGGAATTTAAGCCTTCCAAGAACAGAAATATTGCTTTTATTCGATTGGGTCTACAAGGATTAGAGTTATACAGTGATAAAGGTAAGAAAATCGCGCAGATAAATCCATCTGAGGAAACAGTTCAGCCCCTGAGATTTTTGGCTTTGGGGAACCAAACAGGGAATTTGAGGCTTTATTTTTACTCACCCAGCTTGGAAAAATTTGATGCTTCTTTTCAAGCACTCAACACAACATGTGATCTTCCATTGGCTTGCAAGCCTTATGGCATTTGTACCTTGTCTGGTGCTTGTTCATGCATTCAAGTTTTGACAACGGAAAATGAGAGTAGTACTAGTACCACTTCTAATTGCATTGAAGGAGTTTCATCAGATGGGTTTTGTGGAGGAGGTAAGGCAGAAATGCTTGAATTGGAGAGTGTCACTAGTGTGTTAAGGGGTGCTCCTAAAATAGTTAATGTGAGCAAAGAAGAATGTGGTAAATTGTGCTTGGAAGATTGTAAGTGTGCATCTGCATTACATAACTCTGAAGAATGCTTTCTCTATGGAATGGTGATTGGGGTTAAACAGGTTGAAAGGGAAAGTGGGTTGAGTTACATGGTTAAGGTTCCAAAGGGATCAAGTCATGGGGGTCATGGAAAGTCTAATGTGAAAAAATGGGTGTTGATATTGGTAGGAGTTGTTGATGGGGTGATAATTCTTGTTCTCTTTGGAGGTCTTGGCTACTACTTGATTAGAAAAAGAAGAAGACATTCTTTGCCTAATGGCCATAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

463

Amino Acids

51.19

Weight (kDa)

8.78

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 95 - 170 3.1e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000267)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19660 FvH4_1g30321 FvH4_4g07610 FvH4_5g00140 FvH4_6g23340 FvH4_6g29890
rosa_chinensis RchiOBHm_Chr1g0319561 RchiOBHm_Chr1g0320181 RchiOBHm_Chr1g0330531 RchiOBHm_Chr1g0339901 RchiOBHm_Chr1g0341281 RchiOBHm_Chr1g0346381 RchiOBHm_Chr1g0351211 RchiOBHm_Chr1g0358041 RchiOBHm_Chr1g0367541 RchiOBHm_Chr2g0119361 RchiOBHm_Chr2g0120321 RchiOBHm_Chr2g0140171 RchiOBHm_Chr2g0150711 RchiOBHm_Chr2g0151251 RchiOBHm_Chr2g0160901 RchiOBHm_Chr3g0447381 RchiOBHm_Chr3g0459951 RchiOBHm_Chr3g0465101 RchiOBHm_Chr4g0392281 RchiOBHm_Chr4g0405571 RchiOBHm_Chr4g0412841 RchiOBHm_Chr4g0413331 RchiOBHm_Chr4g0422711 RchiOBHm_Chr4g0422751 RchiOBHm_Chr4g0423141 RchiOBHm_Chr4g0423271 RchiOBHm_Chr4g0424711 RchiOBHm_Chr4g0427731 RchiOBHm_Chr4g0442201 RchiOBHm_Chr5g0026201 RchiOBHm_Chr5g0050261 RchiOBHm_Chr6g0277431 RchiOBHm_Chr6g0279711 RchiOBHm_Chr6g0280101 RchiOBHm_Chr6g0280951 RchiOBHm_Chr6g0295101 RchiOBHm_Chr6g0312921 RchiOBHm_Chr7g0201181 RchiOBHm_Chr7g0204591 RchiOBHm_Chr7g0204721 RchiOBHm_Chr7g0204801 RchiOBHm_Chr7g0208411 RchiOBHm_Chr7g0213041 RchiOBHm_Chr7g0215471
rosa_laevigata RLG00000004867 RLG00000018361 RLG00000036656
rosa_multiflora Rmu_sc0000376.1_g000034 Rmu_sc0001576.1_g000002 Rmu_sc0001971.1_g000008 Rmu_sc0002105.1_g000002 Rmu_sc0002310.1_g000018 Rmu_sc0005120.1_g000007 Rmu_sc0005665.1_g000017 Rmu_sc0005715.1_g000010 Rmu_sc0009785.1_g000031 Rmu_sc0010202.1_g000013 Rmu_sc0040921.1_g000004
rosa_roxburghii Rroxscaffold_1G00003120 Rroxscaffold_1G00026660 Rroxscaffold_2G00098060 Rroxscaffold_2G00111130 Rroxscaffold_4G00279230 Rroxscaffold_4G00295650 Rroxscaffold_5G00361140 Rroxscaffold_5G00374320 Rroxscaffold_6G00406950
rosa_rugosa Rorug01G0102500 Rorug01G0165700 Rorug01G0165700 Rorug01G0195800 Rorug01G0195800 Rorug01G0217200 Rorug01G0335400 Rorug02G0029300 Rorug02G0036800 Rorug02G0073300 Rorug02G0279100 Rorug02G0326300 Rorug02G0338400 Rorug02G0371300.1 Rorug02G0421700 Rorug02G0458000 Rorug03G0105100 Rorug03G0105700 Rorug03G0220900 Rorug03G0272600 Rorug03G0322700 Rorug03G0336800 Rorug03G0356900 Rorug03G0364200.1 Rorug04G0028300 Rorug04G0032600 Rorug04G0034400 Rorug04G0203900 Rorug05G0192000 Rorug05G0192000 Rorug05G0313700 Rorug05G0391500 Rorug05G0403500.1 Rorug06G0032700 Rorug06G0174700 Rorug06G0409900 Rorug06G0458800 Rorug07G0114100 Rorug07G0137600 Rorug07G0163900 Rorug07G0244900 Rorug07G0274700 Rorug07G0310400
rosa_samantha Rh1AG070100 Rh1AG070300 Rh1AG070600 Rh1AG070900 Rh1BG181700 Rh3DG183400 Rh4CG044400 Rh4CG163300 Rh5BG000300 Rh6AG036500 Rh7AG328500 Rh7BG204000 Rh7CG345900
rosa_wichuraiana Rw2G022850 Rw6G002520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 667
AccII CGCG 1 cut(s) 710
AclWI GGATC 2 cut(s) 449, 1237
AcoI YGGCCR 3 cut(s) 49, 259, 1378
AcsI RAATTY 5 cut(s) 253, 589, 620, 778, 815
AcuI CTGAAG 2 cut(s) 350, 1161
AcyI GRCGYC 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 6 cut(s) 110, 209, 420, 889, 946, 952
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 848
AhlI ACTAGT 3 cut(s) 421, 947, 1037
AjnI CCWGG 1 cut(s) 569
AleI CACNNNNGTG 1 cut(s) 1040
AluBI AGCT 4 cut(s) 134, 176, 194, 807
AluI AGCT 4 cut(s) 134, 176, 194, 807
Alw21I GWGCWC 2 cut(s) 567, 1057
AlwI GGATC 2 cut(s) 449, 1237
AlwNI CAGNNNCTG 2 cut(s) 101, 745
AoxI GGCC 3 cut(s) 49, 259, 1378
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 5 cut(s) 253, 589, 620, 778, 815
Asp700I GAANNNNTTC 3 cut(s) 735, 1149, 1363
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 335, 436
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 4 cut(s) 298, 792, 1177, 1315
AvaII GGWCC 2 cut(s) 335, 436
BalI TGGCCA 3 cut(s) 51, 261, 1380
BbsI GAAGAC 1 cut(s) 1366
Bbv12I GWGCWC 2 cut(s) 567, 1057
BbvI GCAGC 1 cut(s) 163
BccI CCATC 7 cut(s) 308, 348, 422, 547, 730, 980, 1292
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 139
BcnI CCSGG 1 cut(s) 364
BcuI ACTAGT 3 cut(s) 421, 947, 1037
BfaI CTAG 4 cut(s) 416, 422, 948, 1038
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 3 cut(s) 209, 420, 946
Bme1390I CCNGG 2 cut(s) 364, 571
Bme18I GGWCC 2 cut(s) 335, 436
BmgT120I GGNCC 2 cut(s) 335, 436
BmiI GGNNCC 3 cut(s) 336, 767, 1221
BmrFI CCNGG 2 cut(s) 364, 571
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 468, 811, 1130
BmuI ACTGGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 1366
BpuMI CCSGG 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 2 cut(s) 438, 593
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 165, 309
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 717, 737
BseNI ACTGG 2 cut(s) 165, 309
BseRI GAGGAG 1 cut(s) 1014
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 710
BshFI GGCC 3 cut(s) 51, 261, 1380
BsiHKAI GWGCWC 2 cut(s) 567, 1057
BsiSI CCGG 3 cut(s) 363, 439, 594
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 2 cut(s) 912, 1151
BsnI GGCC 3 cut(s) 51, 261, 1380
Bsp1286I GDGCHC 2 cut(s) 567, 1057
Bsp143I GATC 3 cut(s) 441, 853, 1229
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 3 cut(s) 51, 261, 1380
BspCNI CTCAG 2 cut(s) 718, 738
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 3 cut(s) 336, 767, 1221
BspPI GGATC 2 cut(s) 449, 1237
BsrI ACTGG 2 cut(s) 165, 309
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 441, 853, 1229
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 396, 689, 736
BstACI GRCGYC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 868, 872
BstDEI CTNAG 3 cut(s) 497, 726, 746
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 3 cut(s) 444, 856, 1232
BstMBI GATC 3 cut(s) 441, 853, 1229
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 2 cut(s) 362, 569
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 1366
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 51, 261, 1380
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 102, 316, 694
Cac8I GCNNGC 2 cut(s) 868, 872
CaiI CAGNNNCTG 2 cut(s) 101, 745
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 335, 436
CseI GACGC 2 cut(s) 283, 495
Csp6I GTAC 6 cut(s) 109, 208, 419, 888, 945, 951
CviAII CATG 8 cut(s) 47, 115, 213, 849, 909, 1210, 1238, 1247
CviQI GTAC 6 cut(s) 109, 208, 419, 888, 945, 951
DdeI CTNAG 3 cut(s) 497, 726, 746
DpnI GATC 3 cut(s) 443, 855, 1231
DpnII GATC 3 cut(s) 441, 853, 1229
DraIII CACNNNGTG 1 cut(s) 500
EaeI YGGCCR 3 cut(s) 49, 259, 1378
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 335, 436
Eco57I CTGAAG 2 cut(s) 350, 1161
EcoRI GAATTC 2 cut(s) 253, 589
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 8 cut(s) 50, 118, 216, 852, 912, 1213, 1241, 1250
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 1351, 1383
FaqI GGGAC 1 cut(s) 379
FatI CATG 8 cut(s) 46, 114, 212, 848, 908, 1209, 1237, 1246
FblI GTMKAC 1 cut(s) 667
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 4 cut(s) 416, 422, 948, 1038
GlaI GCGC 1 cut(s) 711
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 807
HaeIII GGCC 3 cut(s) 51, 261, 1380
HapII CCGG 3 cut(s) 363, 439, 594
HgaI GACGC 2 cut(s) 283, 495
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 8 cut(s) 50, 118, 216, 852, 912, 1213, 1241, 1250
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 67, 120, 412
HpaII CCGG 3 cut(s) 363, 439, 594
HphI GGTGA 4 cut(s) 298, 792, 1177, 1315
Hpy166II GTNNAC 2 cut(s) 111, 668
Hpy188I TCNGA 4 cut(s) 492, 727, 985, 1141
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 2 cut(s) 111, 668
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 238, 325, 639, 965
HpyCH4III ACNGT 3 cut(s) 396, 689, 736
HpyCH4V TGCA 6 cut(s) 179, 870, 912, 966, 1121, 1127
HpyF3I CTNAG 3 cut(s) 497, 726, 746
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 8 cut(s) 50, 118, 216, 852, 912, 1213, 1241, 1250
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 3 cut(s) 441, 853, 1229
LmnI GCTCC 2 cut(s) 221, 1060
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 3 cut(s) 468, 811, 1130
MaeI CTAG 4 cut(s) 416, 422, 948, 1038
MaeIII GTNAC 4 cut(s) 390, 507, 1033, 1205
MalI GATC 3 cut(s) 443, 855, 1231
MboI GATC 3 cut(s) 441, 853, 1229
MboII GAAGA 6 cut(s) 848, 1094, 1118, 1154, 1368, 1371
MfeI CAATTG 1 cut(s) 1387
MhlI GDGCHC 2 cut(s) 567, 1057
MlsI TGGCCA 3 cut(s) 51, 261, 1380
MluNI TGGCCA 3 cut(s) 51, 261, 1380
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 8 cut(s) 95, 381, 396, 721, 777, 992, 995, 1319
Mox20I TGGCCA 3 cut(s) 51, 261, 1380
Mph1103I ATGCAT 1 cut(s) 914
MroXI GAANNNNTTC 3 cut(s) 735, 1149, 1363
MscI TGGCCA 3 cut(s) 51, 261, 1380
MseI TTAA 8 cut(s) 198, 323, 459, 624, 1046, 1068, 1176, 1215
MslI CAYNNNNRTG 1 cut(s) 1040
Msp20I TGGCCA 3 cut(s) 51, 261, 1380
MspI CCGG 3 cut(s) 363, 439, 594
MspR9I CCNGG 2 cut(s) 364, 571
MunI CAATTG 1 cut(s) 1387
Mva1269I GAATGC 2 cut(s) 912, 1151
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 710
NciI CCSGG 1 cut(s) 364
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 441, 853, 1229
NlaIII CATG 8 cut(s) 50, 118, 216, 852, 912, 1213, 1241, 1250
NlaIV GGNNCC 3 cut(s) 336, 767, 1221
NmuCI GTSAC 2 cut(s) 507, 1033
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 1040
PciI ACATGT 1 cut(s) 848
PctI GAATGC 2 cut(s) 912, 1151
PdmI GAANNNNTTC 3 cut(s) 735, 1149, 1363
PfeI GAWTC 3 cut(s) 67, 120, 412
PkrI GCNGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 848
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 336, 767, 1221
PspPI GGNCC 2 cut(s) 335, 436
PstNI CAGNNNCTG 2 cut(s) 101, 745
RsaI GTAC 6 cut(s) 110, 209, 420, 889, 946, 952
RsaNI GTAC 6 cut(s) 109, 208, 419, 888, 945, 951
RseI CAYNNNNRTG 1 cut(s) 1040
SaqAI TTAA 8 cut(s) 198, 323, 459, 624, 1046, 1068, 1176, 1215
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 441, 853, 1229
Sau96I GGNCC 2 cut(s) 335, 436
ScaI AGTACT 3 cut(s) 209, 420, 946
ScrFI CCNGG 2 cut(s) 364, 571
SduI GDGCHC 2 cut(s) 567, 1057
SfaNI GCATC 3 cut(s) 468, 811, 1130
SinI GGWCC 2 cut(s) 335, 436
SmiMI CAYNNNNRTG 1 cut(s) 1040
SpeI ACTAGT 3 cut(s) 421, 947, 1037
SspI AATATT 1 cut(s) 646
SspMI CTAG 4 cut(s) 416, 422, 948, 1038
StyD4I CCNGG 2 cut(s) 362, 569
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 396, 689, 736
TaqI TCGA 3 cut(s) 284, 551, 658
TatI WGTACW 4 cut(s) 108, 207, 418, 944
TfiI GAWTC 3 cut(s) 67, 120, 412
Tru1I TTAA 8 cut(s) 198, 323, 459, 624, 1046, 1068, 1176, 1215
Tru9I TTAA 8 cut(s) 198, 323, 459, 624, 1046, 1068, 1176, 1215
TscAI CASTG 3 cut(s) 102, 316, 694
TseFI GTSAC 2 cut(s) 507, 1033
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 507, 1033
TspDTI ATGAA 7 cut(s) 10, 59, 112, 510, 531, 897, 969
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 3 cut(s) 102, 316, 694
VpaK11BI GGWCC 2 cut(s) 335, 436
XapI RAATTY 5 cut(s) 253, 589, 620, 778, 815
XceI RCATGY 1 cut(s) 852
XmiI GTMKAC 1 cut(s) 667
XmnI GAANNNNTTC 3 cut(s) 735, 1149, 1363
XspI CTAG 4 cut(s) 416, 422, 948, 1038
ZrmI AGTACT 3 cut(s) 209, 420, 946
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.